Wall clock time and date at job start Sun Mar 7 2021 12:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47147 * 2 1 4 4 C 1.35902 * 116.99837 * 84.94713 * 3 2 1 5 5 C 1.38736 * 120.05157 * 174.27923 * 4 3 2 6 6 C 1.38151 * 119.93928 * 179.74434 * 5 4 3 7 7 C 1.38264 * 120.05546 * 0.50287 * 6 5 4 8 8 C 1.50706 * 119.94150 * 179.74651 * 7 6 5 9 9 O 1.42903 * 109.47031 * 120.02487 * 8 7 6 10 10 Si 1.86300 * 109.47187 * 0.02562 * 8 7 6 11 11 C 1.38265 * 120.11503 * 359.77002 * 7 6 5 12 12 C 1.38146 * 120.05095 * 359.97438 * 11 7 6 13 13 C 1.50693 * 109.47745 * 239.99706 * 2 1 3 14 14 O 1.21277 * 120.00217 * 114.99658 * 13 2 1 15 15 N 1.34778 * 120.00282 * 295.00625 * 13 2 1 16 16 C 1.46497 * 120.00372 * 179.97438 * 15 13 2 17 17 C 1.53001 * 109.46950 * 179.97438 * 16 15 13 18 18 H 1.08999 * 112.85177 * 316.19697 * 17 16 15 19 19 C 1.53778 * 113.61667 * 87.50393 * 17 16 15 20 20 C 1.53773 * 87.08396 * 89.11458 * 19 17 16 21 21 H 1.09008 * 113.69046 * 270.87774 * 20 19 17 22 22 S 1.81397 * 113.61870 * 139.98124 * 20 19 17 23 23 C 1.81401 * 101.92178 * 82.50343 * 22 20 19 24 24 O 1.42101 * 108.58411 * 196.98796 * 22 20 19 25 25 O 1.42096 * 108.57998 * 328.01862 * 22 20 19 26 26 C 1.53780 * 87.08145 * 25.43285 * 20 19 17 27 27 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46907 * 60.00267 * 1 2 3 29 29 H 1.08997 * 109.47715 * 300.00621 * 1 2 3 30 30 H 1.09007 * 109.46907 * 119.99733 * 2 1 3 31 31 H 1.07994 * 120.02723 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.97038 * 180.27524 * 6 5 4 33 33 H 1.08996 * 109.46793 * 240.02032 * 8 7 6 34 34 H 0.96703 * 113.99770 * 300.00226 * 9 8 7 35 35 H 1.48503 * 109.99834 * 179.97438 * 10 8 7 36 36 H 1.48495 * 109.99917 * 301.31975 * 10 8 7 37 37 H 1.07996 * 119.97327 * 179.97438 * 11 7 6 38 38 H 1.08007 * 120.02206 * 179.97438 * 12 11 7 39 39 H 0.97010 * 119.99692 * 359.97438 * 15 13 2 40 40 H 1.09000 * 109.47095 * 299.99491 * 16 15 13 41 41 H 1.08995 * 109.46913 * 60.00072 * 16 15 13 42 42 H 1.09001 * 113.61570 * 203.66577 * 19 17 16 43 43 H 1.09004 * 113.61417 * 334.56485 * 19 17 16 44 44 H 1.09005 * 109.47421 * 59.99879 * 23 22 20 45 45 H 1.08994 * 109.47864 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.47459 * 300.00496 * 23 22 20 47 47 H 1.08997 * 113.61739 * 220.02033 * 26 20 19 48 48 H 1.09000 * 113.69132 * 89.12799 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1114 1.9645 1.2062 5 6 2.6775 3.2281 1.2931 6 6 2.7784 3.8556 2.5197 7 6 2.3253 3.2211 3.6615 8 6 2.4418 3.9056 4.9990 9 8 1.1403 4.0660 5.5670 10 14 3.2316 5.5778 4.7741 11 6 1.7659 1.9594 3.5783 12 6 1.6579 1.3299 2.3534 13 6 2.0324 -0.7104 -1.2303 14 8 2.6531 -0.0980 -2.0733 15 7 1.7920 -2.0264 -1.3941 16 6 2.2800 -2.7169 -2.5904 17 6 1.8758 -4.1913 -2.5288 18 1 2.0344 -4.6329 -1.5449 19 6 0.4824 -4.4731 -3.1151 20 6 1.1788 -4.6658 -4.4724 21 1 1.2767 -3.7458 -5.0489 22 16 0.5045 -6.0392 -5.4468 23 6 -0.9413 -5.2705 -6.2274 24 8 1.4404 -6.3771 -6.4613 25 8 0.0538 -7.0490 -4.5545 26 6 2.4450 -5.0348 -3.6817 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0356 3.7223 0.4021 32 1 3.2149 4.8412 2.5873 33 1 3.0565 3.2999 5.6648 34 1 0.5380 4.5957 5.0268 35 1 3.3516 6.2634 6.0860 36 1 4.5727 5.4269 4.1548 37 1 1.4130 1.4657 4.4717 38 1 1.2212 0.3441 2.2890 39 1 1.2958 -2.5164 -0.7197 40 1 1.8450 -2.2574 -3.4780 41 1 3.3662 -2.6400 -2.6366 42 1 0.0214 -5.3819 -2.7280 43 1 -0.1860 -3.6126 -3.0854 44 1 -0.6188 -4.4289 -6.8406 45 1 -1.4487 -6.0037 -6.8542 46 1 -1.6256 -4.9167 -5.4562 47 1 3.3612 -4.6278 -4.1095 48 1 2.5221 -6.0969 -3.4490 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_10157680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:20:58 Heat of formation + Delta-G solvation = -116.615872 kcal Electronic energy + Delta-G solvation = -30662.667184 eV Core-core repulsion = 26199.222201 eV Total energy + Delta-G solvation = -4463.444983 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.81436 -40.88642 -40.01453 -38.98057 -38.01716 -37.14615 -37.06339 -35.66139 -33.33580 -32.06368 -31.44760 -30.44718 -29.20283 -26.84980 -26.68702 -25.78521 -24.78481 -23.95025 -22.42081 -21.51881 -20.41539 -19.71831 -19.47680 -18.51154 -18.38632 -18.12600 -17.21109 -17.15287 -16.92158 -16.86546 -16.56302 -16.39092 -16.05771 -15.87685 -15.78528 -15.47219 -15.13259 -14.78611 -14.68441 -14.31965 -14.27411 -14.13345 -14.02326 -13.94023 -13.62734 -13.56023 -13.39009 -13.31641 -13.24484 -13.22244 -13.07196 -12.86455 -12.73193 -12.24634 -12.11296 -12.00735 -11.97888 -11.68339 -11.63764 -11.57594 -11.07659 -10.84504 -10.41291 -10.23024 -10.04284 -9.21362 -4.99762 -0.92619 0.24754 0.32687 1.33698 1.40196 1.48452 1.63291 1.82672 1.96469 2.47687 2.63338 2.65880 2.89813 3.26832 3.37853 3.42155 3.56875 3.59265 3.59379 3.69581 3.73092 3.83621 3.87320 3.93404 4.07174 4.14248 4.24639 4.28025 4.36134 4.37864 4.53699 4.57045 4.58379 4.60773 4.65027 4.69523 4.73130 4.87411 4.92526 4.94323 4.96984 4.99686 5.11453 5.18728 5.20779 5.29145 5.33626 5.48738 5.67870 6.25597 6.44183 6.79900 7.07939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.063 3.937 3 O -0.312 6.312 4 C 0.120 3.880 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.161 4.161 8 C -0.063 4.063 9 O -0.555 6.555 10 Si 0.767 3.233 11 C -0.057 4.057 12 C -0.207 4.207 13 C 0.516 3.484 14 O -0.570 6.570 15 N -0.705 5.705 16 C 0.135 3.865 17 C -0.104 4.104 18 H 0.113 0.887 19 C -0.108 4.108 20 C -0.593 4.593 21 H 0.176 0.824 22 S 2.415 3.585 23 C -0.643 4.643 24 O -0.995 6.995 25 O -0.978 6.978 26 C -0.114 4.114 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.395 0.605 35 H -0.300 1.300 36 H -0.289 1.289 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.421 0.579 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.129 0.871 46 H 0.154 0.846 47 H 0.093 0.907 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 1.063 2.499 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 O -0.226 6.226 4 C 0.075 3.925 5 C -0.178 4.178 6 C -0.095 4.095 7 C -0.162 4.162 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.674 3.326 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.301 3.699 14 O -0.449 6.449 15 N -0.360 5.360 16 C 0.011 3.989 17 C -0.124 4.124 18 H 0.131 0.869 19 C -0.146 4.146 20 C -0.705 4.705 21 H 0.193 0.807 22 S 2.604 3.396 23 C -0.795 4.795 24 O -0.992 6.992 25 O -0.975 6.975 26 C -0.153 4.153 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.245 0.755 35 H -0.228 1.228 36 H -0.216 1.216 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.167 0.833 45 H 0.148 0.852 46 H 0.173 0.827 47 H 0.112 0.888 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.903 0.803 2.239 5.449 hybrid contribution -0.040 -0.217 0.124 0.253 sum -4.943 0.586 2.363 5.510 Atomic orbital electron populations 1.22364 0.90261 1.05830 1.04410 1.22432 0.97363 0.82129 0.97727 1.86188 1.81494 1.27040 1.27844 1.19253 0.95837 0.93145 0.84277 1.20589 1.03810 0.94220 0.99209 1.20974 0.97880 0.99616 0.91031 1.20336 1.03685 0.96787 0.95369 1.24985 0.90401 1.09029 0.92971 1.86458 1.22968 1.76775 1.50113 0.93793 0.80695 0.77802 0.80320 1.20982 0.95379 0.93620 0.97510 1.21526 1.06544 1.02614 0.91836 1.20495 0.79161 0.82786 0.87417 1.90760 1.41532 1.67106 1.45461 1.45670 1.57678 1.07952 1.24688 1.21201 0.99431 0.90607 0.87622 1.22340 0.96480 0.93191 1.00351 0.86926 1.22941 0.96758 1.05401 0.89525 1.31688 1.09083 1.19280 1.10429 0.80655 1.07627 0.77874 0.78291 0.75762 1.30111 1.19301 1.15039 1.15073 1.93545 1.62811 1.83582 1.59243 1.93548 1.82235 1.55635 1.66120 1.22731 0.95705 1.01538 0.95301 0.87027 0.91985 0.89706 0.85879 0.84742 0.83591 0.87516 0.75495 1.22787 1.21649 0.84315 0.82730 0.74049 0.90903 0.91896 0.86980 0.87114 0.83321 0.85226 0.82717 0.88844 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.46 9.13 71.98 0.66 2.11 16 2 C 0.06 -0.20 2.63 29.85 0.08 -0.12 16 3 O -0.31 -1.53 9.34 -73.46 -0.69 -2.22 16 4 C 0.12 0.30 6.60 22.51 0.15 0.45 16 5 C -0.16 -0.40 9.99 22.37 0.22 -0.17 16 6 C -0.08 0.03 8.66 22.26 0.19 0.23 16 7 C -0.16 0.11 5.39 -19.85 -0.11 0.01 16 8 C -0.06 0.09 2.82 71.24 0.20 0.29 16 9 O -0.56 0.62 12.77 -148.98 -1.90 -1.28 16 10 Si 0.77 -1.57 29.78 68.60 2.04 0.47 16 11 C -0.06 0.08 9.60 22.25 0.21 0.29 16 12 C -0.21 0.40 8.24 22.36 0.18 0.59 16 13 C 0.52 0.45 7.18 87.65 0.63 1.08 16 14 O -0.57 -7.05 16.51 15.97 0.26 -6.78 16 15 N -0.71 5.27 5.52 -463.08 -2.55 2.71 16 16 C 0.13 -0.86 5.35 86.38 0.46 -0.40 16 17 C -0.10 1.07 3.94 -10.27 -0.04 1.03 16 18 H 0.11 -1.44 8.14 -2.39 -0.02 -1.46 16 19 C -0.11 1.28 7.16 31.12 0.22 1.50 16 20 C -0.59 5.36 3.82 31.12 0.12 5.48 16 21 H 0.18 -2.36 7.72 -2.38 -0.02 -2.38 16 22 S 2.42 -6.75 5.34 -56.49 -0.30 -7.05 16 23 C -0.64 6.47 10.62 113.37 1.20 7.68 16 24 O -0.99 -7.52 18.10 -127.37 -2.31 -9.82 16 25 O -0.98 -4.36 17.19 -127.37 -2.19 -6.55 16 26 C -0.11 0.77 7.26 31.12 0.23 1.00 16 27 H 0.11 -1.69 7.92 -2.39 -0.02 -1.71 16 28 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.08 -0.76 6.91 -2.39 -0.02 -0.77 16 30 H 0.12 -1.05 6.31 -2.38 -0.02 -1.06 16 31 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 32 H 0.15 -0.61 4.87 -2.91 -0.01 -0.63 16 33 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.40 -3.52 8.70 -74.06 -0.64 -4.17 16 35 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16 36 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 37 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.16 -1.20 5.43 -2.91 -0.02 -1.22 16 39 H 0.42 -6.27 8.26 -92.70 -0.77 -7.04 16 40 H 0.07 -0.39 7.39 -2.39 -0.02 -0.41 16 41 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.11 -1.26 7.36 -2.39 -0.02 -1.27 16 43 H 0.11 -1.73 8.10 -2.38 -0.02 -1.75 16 44 H 0.15 -2.03 8.14 -2.39 -0.02 -2.05 16 45 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 46 H 0.15 -2.31 8.14 -2.39 -0.02 -2.33 16 47 H 0.09 -0.62 8.10 -2.39 -0.02 -0.64 16 48 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 Total: 0.00 -38.72 405.26 -3.39 -42.11 By element: Atomic # 1 Polarization: -32.26 SS G_CDS: -0.37 Total: -32.63 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 4.61 Total: 21.04 kcal Atomic # 7 Polarization: 5.27 SS G_CDS: -2.55 Total: 2.71 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -6.82 Total: -26.65 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.04 Total: 0.47 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -0.30 Total: -7.05 kcal Total: -38.72 -3.39 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_10157680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.505 kcal (2) G-P(sol) polarization free energy of solvation -38.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds