Wall clock time and date at job start Sun Mar 7 2021 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 117.00011 * 2 1 4 4 C 1.38402 * 120.12060 * 359.97438 * 3 2 1 5 5 C 1.38729 * 120.02777 * 180.02562 * 4 3 2 6 6 O 1.35719 * 119.85902 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00245 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27821 * 0.04448 * 5 4 3 9 9 C 1.50704 * 119.88110 * 179.97438 * 8 5 4 10 10 O 1.42901 * 109.46969 * 74.99642 * 9 8 5 11 11 Si 1.86292 * 109.46874 * 195.00028 * 9 8 5 12 12 C 1.37579 * 120.23725 * 359.67196 * 8 5 4 13 13 C 1.39819 * 119.96455 * 0.58591 * 12 8 5 14 14 C 1.47301 * 120.13595 * 179.71681 * 13 12 8 15 15 O 1.21623 * 120.00000 * 179.72180 * 14 13 12 16 16 N 1.34773 * 120.00070 * 359.97438 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72645 * 16 14 13 18 18 C 1.52999 * 109.47528 * 180.02562 * 17 16 14 19 19 H 1.08999 * 112.84627 * 316.19742 * 18 17 16 20 20 C 1.53791 * 113.61328 * 87.50026 * 18 17 16 21 21 C 1.53789 * 87.07724 * 89.11748 * 20 18 17 22 22 H 1.08992 * 113.68989 * 270.87001 * 21 20 18 23 23 S 1.81397 * 113.61106 * 139.97985 * 21 20 18 24 24 C 1.81401 * 101.92108 * 82.50310 * 23 21 20 25 25 O 1.42101 * 108.57641 * 196.98807 * 23 21 20 26 26 O 1.42100 * 108.58002 * 328.01816 * 23 21 20 27 27 C 1.53777 * 87.08314 * 25.43123 * 21 20 18 28 28 H 1.08992 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46993 * 300.00244 * 1 2 3 30 30 H 1.08997 * 109.46567 * 60.00145 * 1 2 3 31 31 H 1.07993 * 119.98243 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.46957 * 60.00180 * 7 6 5 33 33 H 1.08992 * 109.47314 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47083 * 300.00233 * 7 6 5 35 35 H 1.09003 * 109.46866 * 314.99956 * 9 8 5 36 36 H 0.96705 * 113.99777 * 60.00741 * 10 9 8 37 37 H 1.48498 * 110.00252 * 58.68346 * 11 9 8 38 38 H 1.48509 * 109.99713 * 179.97438 * 11 9 8 39 39 H 1.08004 * 120.02119 * 180.29457 * 12 8 5 40 40 H 0.97000 * 120.00112 * 359.73083 * 16 14 13 41 41 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 42 42 H 1.08993 * 109.47029 * 59.99907 * 17 16 14 43 43 H 1.09000 * 113.61075 * 203.66498 * 20 18 17 44 44 H 1.08998 * 113.61227 * 334.57349 * 20 18 17 45 45 H 1.08997 * 109.47167 * 60.00005 * 24 23 21 46 46 H 1.09003 * 109.47075 * 179.97438 * 24 23 21 47 47 H 1.09002 * 109.47283 * 299.99455 * 24 23 21 48 48 H 1.08996 * 113.61889 * 220.01587 * 27 21 20 49 49 H 1.08999 * 113.61523 * 89.11283 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 -0.0005 5 6 1.9254 3.6061 -0.0011 6 8 1.1853 4.7437 -0.0011 7 6 -0.2358 4.5932 -0.0011 8 6 3.3147 3.6834 -0.0020 9 6 3.9917 5.0298 -0.0032 10 8 3.8949 5.6127 1.2980 11 14 5.7861 4.8221 -0.4588 12 6 4.0725 2.5351 0.0044 13 6 3.4462 1.2851 -0.0005 14 6 4.2539 0.0532 0.0000 15 8 3.7065 -1.0329 0.0009 16 7 5.5995 0.1297 0.0047 17 6 6.4028 -1.0954 0.0113 18 6 7.8888 -0.7309 0.0163 19 1 8.1299 0.0721 -0.6802 20 6 8.4667 -0.5206 1.4259 21 6 8.7813 -2.0260 1.4359 22 1 7.9676 -2.6408 1.8204 23 16 10.3833 -2.4285 2.1857 24 6 9.9777 -2.4380 3.9537 25 8 10.7464 -3.7463 1.7974 26 8 11.2830 -1.3580 1.9333 27 6 8.8219 -1.9478 -0.0993 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 0.2150 2.3164 -0.0005 32 1 -0.5430 4.0439 0.8890 33 1 -0.7053 5.5768 -0.0015 34 1 -0.5430 4.0439 -0.8910 35 1 3.5052 5.6804 -0.7299 36 1 4.3077 5.0864 1.9964 37 1 5.9003 4.1876 -1.7965 38 1 6.4649 6.1429 -0.4641 39 1 5.1506 2.5992 0.0085 40 1 6.0360 0.9959 0.0038 41 1 6.1690 -1.6784 0.9022 42 1 6.1756 -1.6836 -0.8777 43 1 9.3548 0.1111 1.4438 44 1 7.7210 -0.2255 2.1640 45 1 9.2137 -3.1909 4.1472 46 1 10.8725 -2.6723 4.5305 47 1 9.6033 -1.4569 4.2459 48 1 8.3630 -2.8046 -0.5925 49 1 9.8070 -1.7061 -0.4983 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12297780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:21:28 Heat of formation + Delta-G solvation = -149.777242 kcal Electronic energy + Delta-G solvation = -34331.136828 eV Core-core repulsion = 29547.571669 eV Total energy + Delta-G solvation = -4783.565159 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.08768 -40.82002 -40.13529 -39.54400 -38.43484 -37.94560 -36.99307 -36.96011 -35.39339 -32.24147 -31.97687 -30.37973 -29.21471 -28.96993 -28.00214 -26.73624 -26.11635 -25.39091 -24.18579 -22.64863 -21.56191 -20.48214 -19.98365 -19.56768 -18.70916 -18.38009 -18.05063 -17.88002 -17.24190 -17.06773 -16.98658 -16.82764 -16.61979 -16.28909 -16.25510 -16.09456 -15.78941 -15.72560 -15.56344 -15.28602 -14.77438 -14.57298 -14.18082 -14.08700 -13.99886 -13.88911 -13.83969 -13.53424 -13.49077 -13.26500 -13.14687 -13.10716 -12.99610 -12.67310 -12.62447 -12.53476 -12.51826 -12.25338 -11.98416 -11.90931 -11.64136 -11.52618 -11.47028 -11.01218 -10.76981 -10.36827 -10.09108 -9.90473 -9.17707 -5.04315 -0.85163 -0.24638 0.09194 1.32425 1.66979 1.77944 1.89900 2.03251 2.12187 2.12792 2.19304 2.63493 2.71068 2.98219 3.36441 3.45524 3.50473 3.53202 3.57280 3.69789 3.72484 3.75244 3.88361 4.12078 4.13364 4.18715 4.23850 4.24490 4.25855 4.27193 4.28369 4.33068 4.49066 4.51717 4.62856 4.65868 4.68849 4.71895 4.76275 4.81898 4.91986 5.00682 5.01538 5.03745 5.04651 5.07806 5.30800 5.33890 5.50664 6.03306 6.29102 6.59698 6.87257 7.30042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.303 6.303 3 C 0.216 3.784 4 C -0.312 4.312 5 C 0.211 3.789 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.204 4.204 9 C -0.062 4.062 10 O -0.554 6.554 11 Si 0.778 3.222 12 C 0.011 3.989 13 C -0.225 4.225 14 C 0.563 3.437 15 O -0.566 6.566 16 N -0.715 5.715 17 C 0.137 3.863 18 C -0.107 4.107 19 H 0.113 0.887 20 C -0.108 4.108 21 C -0.593 4.593 22 H 0.176 0.824 23 S 2.416 3.584 24 C -0.643 4.643 25 O -0.996 6.996 26 O -0.978 6.978 27 C -0.113 4.113 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.393 0.607 37 H -0.274 1.274 38 H -0.298 1.298 39 H 0.171 0.829 40 H 0.414 0.586 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.147 0.853 46 H 0.128 0.872 47 H 0.155 0.845 48 H 0.092 0.908 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 3.161 3.590 6.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.167 3.833 4 C -0.332 4.332 5 C 0.163 3.837 6 O -0.226 6.226 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.171 4.171 10 O -0.362 6.362 11 Si 0.682 3.318 12 C -0.007 4.007 13 C -0.229 4.229 14 C 0.352 3.648 15 O -0.446 6.446 16 N -0.369 5.369 17 C 0.014 3.986 18 C -0.127 4.127 19 H 0.131 0.869 20 C -0.146 4.146 21 C -0.705 4.705 22 H 0.193 0.807 23 S 2.605 3.395 24 C -0.795 4.795 25 O -0.993 6.993 26 O -0.975 6.975 27 C -0.152 4.152 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.243 0.757 37 H -0.200 1.200 38 H -0.225 1.225 39 H 0.188 0.812 40 H 0.252 0.748 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.166 0.834 46 H 0.146 0.854 47 H 0.174 0.826 48 H 0.110 0.890 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.128 2.847 2.296 4.813 hybrid contribution -1.821 0.351 0.029 1.854 sum -4.949 3.197 2.325 6.334 Atomic orbital electron populations 1.23456 0.76638 1.05721 1.02548 1.86362 1.23079 1.25893 1.86052 1.19006 0.91278 0.84580 0.88471 1.21410 1.01961 0.90857 1.18945 1.18981 0.91085 0.84851 0.88808 1.86143 1.21043 1.28892 1.86568 1.23448 0.76348 1.05764 1.02579 1.19623 0.90824 0.96864 1.13241 1.25085 1.11419 0.91606 0.89008 1.86515 1.82653 1.50218 1.16792 0.94354 0.73263 0.81475 0.82751 1.20877 0.99820 0.88561 0.91464 1.19163 0.90658 0.93995 1.19083 1.17972 0.82592 0.88174 0.76050 1.90833 1.72477 1.30292 1.50977 1.45707 1.04890 1.10838 1.75471 1.21165 0.88536 0.86432 1.02513 1.22381 0.92069 0.99187 0.99089 0.86886 1.22973 1.03749 0.89630 0.98287 1.31687 1.21361 1.08957 1.08446 0.80652 1.07605 0.78474 0.73497 0.79881 1.30109 1.13451 1.13910 1.22061 1.93540 1.82972 1.40137 1.82698 1.93547 1.61775 1.57064 1.85133 1.22718 1.01588 1.00235 0.90625 0.86886 0.91028 0.91279 0.82218 0.91200 0.86424 0.91343 0.88630 0.75706 1.20034 1.22531 0.81185 0.74786 0.90870 0.92078 0.86710 0.86875 0.83426 0.85358 0.82630 0.88962 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.06 8.56 -68.73 -0.59 -2.65 16 3 C 0.22 0.95 6.70 22.82 0.15 1.10 16 4 C -0.31 -0.23 8.01 22.43 0.18 -0.05 16 5 C 0.21 0.36 6.67 22.61 0.15 0.51 16 6 O -0.31 -0.67 9.80 -90.41 -0.89 -1.56 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.15 5.27 -19.80 -0.10 0.04 16 9 C -0.06 0.08 2.37 71.24 0.17 0.24 16 10 O -0.55 0.21 12.88 -148.98 -1.92 -1.71 16 11 Si 0.78 -4.28 29.91 68.60 2.05 -2.23 16 12 C 0.01 -0.04 8.14 22.50 0.18 0.14 16 13 C -0.22 -0.51 5.89 -20.00 -0.12 -0.63 16 14 C 0.56 2.41 7.76 86.63 0.67 3.08 16 15 O -0.57 -7.58 15.15 16.86 0.26 -7.33 16 16 N -0.72 3.16 5.50 -466.49 -2.57 0.60 16 17 C 0.14 -0.68 5.35 86.38 0.46 -0.22 16 18 C -0.11 1.01 3.94 -10.26 -0.04 0.97 16 19 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 20 C -0.11 1.26 7.16 31.13 0.22 1.48 16 21 C -0.59 5.21 3.82 31.12 0.12 5.33 16 22 H 0.18 -2.32 7.72 -2.39 -0.02 -2.34 16 23 S 2.42 -6.57 5.34 -56.49 -0.30 -6.87 16 24 C -0.64 6.39 10.62 113.37 1.20 7.60 16 25 O -1.00 -7.69 18.10 -127.37 -2.31 -9.99 16 26 O -0.98 -4.35 17.19 -127.37 -2.19 -6.54 16 27 C -0.11 0.72 7.26 31.12 0.23 0.95 16 28 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 30 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 31 H 0.16 -0.61 4.50 -2.91 -0.01 -0.62 16 32 H 0.07 -0.50 7.65 -2.38 -0.02 -0.52 16 33 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.07 -0.49 7.65 -2.39 -0.02 -0.51 16 35 H 0.10 0.21 7.82 -2.39 -0.02 0.20 16 36 H 0.39 -3.74 8.70 -74.05 -0.64 -4.39 16 37 H -0.27 0.44 7.11 99.48 0.71 1.15 16 38 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 39 H 0.17 -2.00 3.44 -2.91 -0.01 -2.01 16 40 H 0.41 -4.78 6.49 -92.71 -0.60 -5.38 16 41 H 0.07 -0.32 7.39 -2.38 -0.02 -0.34 16 42 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.11 -1.32 7.36 -2.39 -0.02 -1.34 16 44 H 0.11 -1.76 8.10 -2.39 -0.02 -1.77 16 45 H 0.15 -1.98 8.14 -2.39 -0.02 -2.00 16 46 H 0.13 -1.15 8.14 -2.39 -0.02 -1.16 16 47 H 0.16 -2.32 8.14 -2.39 -0.02 -2.34 16 48 H 0.09 -0.56 8.10 -2.39 -0.02 -0.58 16 49 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 Total: 0.00 -40.90 410.51 -2.94 -43.84 By element: Atomic # 1 Polarization: -28.06 SS G_CDS: -0.19 Total: -28.25 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.70 Total: 22.69 kcal Atomic # 7 Polarization: 3.16 SS G_CDS: -2.57 Total: 0.60 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -7.63 Total: -29.77 kcal Atomic # 14 Polarization: -4.28 SS G_CDS: 2.05 Total: -2.23 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -0.30 Total: -6.87 kcal Total: -40.90 -2.94 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12297780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.935 kcal (2) G-P(sol) polarization free energy of solvation -40.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds