Wall clock time and date at job start Sun Mar 7 2021 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42098 * 108.58176 * 2 1 4 4 O 1.42104 * 108.57954 * 228.97064 * 2 1 3 5 5 C 1.81404 * 101.92116 * 114.48917 * 2 1 3 6 6 H 1.09002 * 112.84878 * 55.32993 * 5 2 1 7 7 C 1.53786 * 113.61654 * 186.52621 * 5 2 1 8 8 C 1.53783 * 87.08050 * 140.06198 * 7 5 2 9 9 H 1.08993 * 113.61424 * 220.01734 * 8 7 5 10 10 C 1.53005 * 113.61139 * 89.20025 * 8 7 5 11 11 N 1.46495 * 109.46741 * 174.99756 * 10 8 7 12 12 C 1.34780 * 119.99845 * 180.02562 * 11 10 8 13 13 O 1.21704 * 120.00025 * 359.97438 * 12 11 10 14 14 C 1.46424 * 120.00514 * 179.97438 * 12 11 10 15 15 C 1.34803 * 120.00585 * 179.97438 * 14 12 11 16 16 C 1.47205 * 120.00227 * 180.02562 * 15 14 12 17 17 C 1.39833 * 120.16895 * 359.72167 * 16 15 14 18 18 C 1.37898 * 119.82349 * 179.78947 * 17 16 15 19 19 C 1.38398 * 120.16918 * 0.47418 * 18 17 16 20 20 C 1.50700 * 119.82644 * 179.76341 * 19 18 17 21 21 O 1.42899 * 109.47338 * 120.01561 * 20 19 18 22 22 Si 1.86302 * 109.47004 * 0.02562 * 20 19 18 23 23 C 1.38398 * 120.34860 * 359.78052 * 19 18 17 24 24 C 1.37893 * 120.16827 * 359.97438 * 23 19 18 25 25 C 1.53781 * 113.61370 * 284.13506 * 5 2 1 26 26 H 1.09006 * 109.47120 * 305.51470 * 1 2 3 27 27 H 1.09005 * 109.47395 * 65.50998 * 1 2 3 28 28 H 1.08992 * 109.47668 * 185.51125 * 1 2 3 29 29 H 1.08992 * 113.61675 * 254.61457 * 7 5 2 30 30 H 1.09005 * 113.61030 * 25.43106 * 7 5 2 31 31 H 1.08994 * 109.47390 * 295.00239 * 10 8 7 32 32 H 1.09006 * 109.46643 * 55.00304 * 10 8 7 33 33 H 0.97000 * 120.00343 * 0.02562 * 11 10 8 34 34 H 1.08004 * 119.99708 * 0.02562 * 14 12 11 35 35 H 1.08004 * 119.99707 * 0.02562 * 15 14 12 36 36 H 1.08000 * 120.08788 * 0.03006 * 17 16 15 37 37 H 1.07999 * 119.91198 * 180.23128 * 18 17 16 38 38 H 1.08991 * 109.47365 * 240.01906 * 20 19 18 39 39 H 0.96698 * 114.00239 * 180.02562 * 21 20 19 40 40 H 1.48499 * 110.00282 * 298.68226 * 22 20 19 41 41 H 1.48505 * 110.00016 * 59.99906 * 22 20 19 42 42 H 1.08005 * 119.91482 * 179.97438 * 23 19 18 43 43 H 1.08009 * 120.08426 * 179.97438 * 24 23 19 44 44 H 1.08999 * 113.61567 * 334.48090 * 25 5 2 45 45 H 1.08998 * 113.61196 * 105.38444 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6152 6 1 1.7170 -1.7081 1.7571 7 6 3.6856 -0.7200 1.9670 8 6 3.2640 -0.3655 3.4028 9 1 3.9069 0.3767 3.8760 10 6 3.0166 -1.5884 4.2885 11 7 2.7389 -1.1507 5.6587 12 6 2.4896 -2.0621 6.6198 13 8 2.4949 -3.2487 6.3492 14 6 2.2126 -1.6249 7.9894 15 6 1.9628 -2.5364 8.9506 16 6 1.6837 -2.0967 10.3275 17 6 1.6825 -0.7346 10.6435 18 6 1.4158 -0.3304 11.9347 19 6 1.1595 -1.2694 12.9185 20 6 0.8743 -0.8193 14.3282 21 8 -0.4255 -1.2674 14.7176 22 14 0.9404 1.0407 14.4115 23 6 1.1642 -2.6196 12.6147 24 6 1.4241 -3.0393 11.3272 25 6 1.9792 0.2284 2.7948 26 1 -0.3634 0.5970 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3634 -1.0228 0.0987 29 1 4.1647 -1.6952 1.8808 30 1 4.2435 0.0714 1.4663 31 1 2.1630 -2.1476 3.9056 32 1 3.9008 -2.2258 4.2829 33 1 2.7343 -0.2050 5.8742 34 1 2.2075 -0.5718 8.2295 35 1 1.9675 -3.5894 8.7105 36 1 1.8860 -0.0008 9.8776 37 1 1.4108 0.7215 12.1795 38 1 1.6206 -1.2399 15.0020 39 1 -0.6766 -1.0127 15.6160 40 1 2.2964 1.5180 14.0395 41 1 -0.0727 1.6264 13.4972 42 1 0.9637 -3.3464 13.3881 43 1 1.4278 -4.0934 11.0917 44 1 2.0711 1.2795 2.5212 45 1 1.0816 0.0183 3.3764 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:22:40 Heat of formation + Delta-G solvation = -60.000608 kcal Electronic energy + Delta-G solvation = -27083.487530 eV Core-core repulsion = 22968.491240 eV Total energy + Delta-G solvation = -4114.996290 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -41.18825 -40.68759 -39.95959 -37.99661 -37.82274 -37.04751 -35.57304 -35.17447 -32.38635 -31.56544 -30.74321 -29.54274 -27.20807 -27.08714 -25.49109 -24.18594 -23.56993 -21.98519 -21.08091 -20.19001 -19.73397 -18.70609 -18.57670 -18.46239 -17.51370 -17.25953 -17.08299 -17.00658 -16.69400 -16.29666 -16.21145 -16.01834 -15.37080 -15.27220 -14.99680 -14.79610 -14.48305 -14.37897 -14.27590 -14.11441 -13.99974 -13.89958 -13.84958 -13.67791 -13.39146 -13.17846 -13.04041 -13.03744 -12.90065 -12.37614 -12.09517 -12.08336 -11.97648 -11.91569 -11.85641 -11.40076 -11.22164 -10.95775 -10.42749 -10.19608 -10.10669 -9.32884 -5.06220 -1.07855 -0.63403 0.25893 0.82714 1.18084 1.54561 1.62530 1.86906 2.04037 2.22148 2.43922 2.68870 2.71167 3.02885 3.17959 3.23626 3.26618 3.35039 3.49328 3.61376 3.70894 3.73837 3.78834 3.81612 3.96553 4.04839 4.09398 4.15268 4.18076 4.25108 4.29621 4.33176 4.41235 4.54214 4.56586 4.59818 4.63896 4.69970 4.72141 4.84029 4.96449 4.97513 5.02208 5.25555 5.32693 5.36737 5.49567 5.76012 6.40128 6.51158 7.16229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.098 4.098 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.135 3.865 11 N -0.727 5.727 12 C 0.548 3.452 13 O -0.543 6.543 14 C -0.217 4.217 15 C -0.012 4.012 16 C -0.075 4.075 17 C -0.093 4.093 18 C -0.126 4.126 19 C -0.062 4.062 20 C -0.075 4.075 21 O -0.545 6.545 22 Si 0.684 3.316 23 C -0.091 4.091 24 C -0.090 4.090 25 C -0.113 4.113 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.403 0.597 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.384 0.616 40 H -0.254 1.254 41 H -0.250 1.250 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 3.157 6.971 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.137 4.137 8 C -0.133 4.133 9 H 0.115 0.885 10 C 0.011 3.989 11 N -0.378 5.378 12 C 0.338 3.662 13 O -0.421 6.421 14 C -0.238 4.238 15 C -0.032 4.032 16 C -0.075 4.075 17 C -0.111 4.111 18 C -0.144 4.144 19 C -0.062 4.062 20 C -0.186 4.186 21 O -0.352 6.352 22 Si 0.585 3.415 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.151 4.151 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.238 0.762 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.232 0.768 40 H -0.179 1.179 41 H -0.175 1.175 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.127 0.873 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.067 3.105 5.015 5.994 hybrid contribution -0.543 -0.325 0.361 0.729 sum -1.610 2.780 5.376 6.263 Atomic orbital electron populations 1.30230 1.26620 1.11678 1.11889 1.07823 0.78497 0.75876 0.77298 1.93608 1.79209 1.34168 1.86317 1.93615 1.79081 1.66976 1.53851 1.31773 1.07743 1.12291 1.19944 0.82836 1.22604 0.90745 1.04589 0.95715 1.22500 0.97899 0.97777 0.95167 0.88494 1.21167 1.02115 0.95306 0.80270 1.45830 1.72715 1.10114 1.09163 1.18315 0.76657 0.85743 0.85534 1.90848 1.51548 1.16703 1.83038 1.22866 1.07559 1.00635 0.92693 1.22407 0.90006 1.00541 0.90223 1.19045 1.01938 0.93299 0.93214 1.21295 0.98489 0.95210 0.96130 1.20810 1.01826 0.98380 0.93361 1.19546 0.99026 0.94009 0.93646 1.24727 0.87929 1.11527 0.94391 1.86486 1.31475 1.80536 1.36653 0.95223 0.81085 0.75312 0.89849 1.20985 0.98074 0.95120 0.96723 1.21482 0.97304 0.99683 0.92314 1.22889 0.99655 0.98398 0.94137 0.85275 0.85172 0.85293 0.88793 0.87944 0.90873 0.90549 0.76243 0.85251 0.84316 0.85081 0.86137 0.90491 0.76846 1.17945 1.17480 0.84908 0.84782 0.87349 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.50 10.62 101.05 1.07 3.57 16 2 S 2.42 -2.69 5.29 -107.50 -0.57 -3.26 16 3 O -0.94 -2.13 17.39 -57.83 -1.01 -3.13 16 4 O -0.94 -3.14 18.10 -57.83 -1.05 -4.19 16 5 C -0.61 2.04 3.80 -25.92 -0.10 1.94 16 6 H 0.15 -0.78 7.72 -51.93 -0.40 -1.18 16 7 C -0.10 0.26 7.26 -25.92 -0.19 0.07 16 8 C -0.11 0.39 3.94 -89.66 -0.35 0.04 16 9 H 0.10 -0.41 8.14 -51.93 -0.42 -0.84 16 10 C 0.13 -0.22 5.36 -4.04 -0.02 -0.24 16 11 N -0.73 1.11 5.55 -61.70 -0.34 0.76 16 12 C 0.55 0.86 7.74 -12.96 -0.10 0.76 16 13 O -0.54 -3.08 16.23 5.19 0.08 -3.00 16 14 C -0.22 0.05 9.41 -37.51 -0.35 -0.31 16 15 C -0.01 -0.01 9.46 -37.16 -0.35 -0.36 16 16 C -0.07 -0.06 5.87 -105.06 -0.62 -0.68 16 17 C -0.09 -0.05 9.41 -39.11 -0.37 -0.42 16 18 C -0.13 -0.17 8.65 -39.65 -0.34 -0.51 16 19 C -0.06 -0.09 5.43 -104.50 -0.57 -0.66 16 20 C -0.08 0.06 2.81 36.01 0.10 0.16 16 21 O -0.55 0.26 12.74 -35.23 -0.45 -0.19 16 22 Si 0.68 -1.20 29.77 -169.99 -5.06 -6.26 16 23 C -0.09 -0.10 9.59 -39.65 -0.38 -0.48 16 24 C -0.09 -0.06 9.80 -39.11 -0.38 -0.44 16 25 C -0.11 0.45 7.18 -25.78 -0.19 0.27 16 26 H 0.13 -0.71 8.14 -51.92 -0.42 -1.14 16 27 H 0.13 -0.48 8.14 -51.92 -0.42 -0.91 16 28 H 0.13 -0.67 8.14 -51.93 -0.42 -1.10 16 29 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 30 H 0.10 -0.28 8.10 -51.93 -0.42 -0.70 16 31 H 0.07 -0.08 7.39 -51.93 -0.38 -0.46 16 32 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.40 -1.73 8.45 -40.82 -0.35 -2.07 16 34 H 0.13 -0.37 6.07 -52.48 -0.32 -0.69 16 35 H 0.14 0.15 7.52 -52.48 -0.39 -0.25 16 36 H 0.13 -0.24 6.17 -52.49 -0.32 -0.57 16 37 H 0.12 0.08 4.85 -52.49 -0.25 -0.17 16 38 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 39 H 0.38 -2.10 8.74 45.56 0.40 -1.70 16 40 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 41 H -0.25 -0.36 7.11 56.52 0.40 0.05 16 42 H 0.13 -0.01 8.06 -52.48 -0.42 -0.43 16 43 H 0.13 -0.16 8.06 -52.48 -0.42 -0.58 16 44 H 0.11 -0.45 7.53 -51.93 -0.39 -0.84 16 45 H 0.09 -0.45 8.11 -51.93 -0.42 -0.87 16 LS Contribution 389.16 15.07 5.86 5.86 Total: 0.00 -14.73 389.16 -11.91 -26.64 By element: Atomic # 1 Polarization: -9.70 SS G_CDS: -6.25 Total: -15.94 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.14 Total: 2.70 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -0.34 Total: 0.76 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -2.42 Total: -10.51 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.06 Total: -6.26 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -0.57 Total: -3.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -14.73 -11.91 -26.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.362 kcal (2) G-P(sol) polarization free energy of solvation -14.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds