Wall clock time and date at job start Sun Mar 7 2021 12:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42093 * 108.57724 * 2 1 4 4 O 1.42102 * 108.57835 * 228.97070 * 2 1 3 5 5 C 1.81405 * 101.91745 * 114.48520 * 2 1 3 6 6 H 1.09000 * 112.85228 * 53.80433 * 5 2 1 7 7 C 1.53787 * 113.60953 * 184.99980 * 5 2 1 8 8 C 1.53784 * 87.07923 * 140.06554 * 7 5 2 9 9 H 1.09004 * 113.61162 * 220.01809 * 8 7 5 10 10 C 1.52998 * 113.61395 * 89.11282 * 8 7 5 11 11 N 1.46500 * 109.46940 * 174.99914 * 10 8 7 12 12 C 1.34780 * 120.00219 * 180.02562 * 11 10 8 13 13 O 1.21573 * 119.99472 * 359.97438 * 12 11 10 14 14 C 1.47723 * 120.00374 * 180.02562 * 12 11 10 15 15 C 1.39630 * 120.11725 * 179.97438 * 14 12 11 16 16 C 1.37854 * 119.87686 * 179.97438 * 15 14 12 17 17 C 1.50703 * 119.94290 * 179.97438 * 16 15 14 18 18 O 1.42894 * 109.47196 * 254.99908 * 17 16 15 19 19 Si 1.86293 * 109.47303 * 134.99496 * 17 16 15 20 20 C 1.38637 * 120.12205 * 0.02562 * 16 15 14 21 21 F 1.35097 * 119.88208 * 179.97438 * 20 16 15 22 22 C 1.38679 * 120.23675 * 359.95752 * 20 16 15 23 23 C 1.37820 * 120.11694 * 359.78708 * 22 20 16 24 24 C 1.53779 * 87.08045 * 334.56667 * 8 7 5 25 25 H 1.09000 * 109.47138 * 305.51530 * 1 2 3 26 26 H 1.09002 * 109.46896 * 65.51555 * 1 2 3 27 27 H 1.09002 * 109.47351 * 185.51346 * 1 2 3 28 28 H 1.09004 * 113.61202 * 254.61307 * 7 5 2 29 29 H 1.08994 * 113.61447 * 25.51739 * 7 5 2 30 30 H 1.08997 * 109.47537 * 295.00205 * 10 8 7 31 31 H 1.09002 * 109.46990 * 55.00028 * 10 8 7 32 32 H 0.97000 * 120.00228 * 0.02562 * 11 10 8 33 33 H 1.08000 * 120.06479 * 359.94778 * 15 14 12 34 34 H 1.09001 * 109.46758 * 14.99716 * 17 16 15 35 35 H 0.96703 * 113.99993 * 179.97438 * 18 17 16 36 36 H 1.48502 * 110.00071 * 60.00276 * 19 17 16 37 37 H 1.48505 * 110.00325 * 181.32134 * 19 17 16 38 38 H 1.07999 * 119.94049 * 180.02562 * 22 20 16 39 39 H 1.08002 * 120.05784 * 180.25556 * 23 22 20 40 40 H 1.09006 * 113.61307 * 270.88660 * 24 8 7 41 41 H 1.08999 * 113.69146 * 139.99146 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 1 1.6956 -1.6958 1.7678 7 6 3.6893 -0.7535 1.9509 8 6 3.2919 -0.3814 3.3891 9 1 3.9573 0.3480 3.8511 10 6 3.0232 -1.5931 4.2837 11 7 2.7710 -1.1417 5.6544 12 6 2.5091 -2.0417 6.6229 13 8 2.4818 -3.2281 6.3588 14 6 2.2541 -1.5866 8.0049 15 6 1.9821 -2.5169 9.0100 16 6 1.7454 -2.0867 10.2981 17 6 1.4510 -3.0895 11.3839 18 8 0.0568 -3.0589 11.6953 19 14 2.4369 -2.6638 12.9063 20 6 1.7766 -0.7332 10.5964 21 9 1.5434 -0.3169 11.8603 22 6 2.0467 0.1950 9.6021 23 6 2.2899 -0.2246 8.3120 24 6 2.0173 0.2386 2.7927 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 4.1442 -1.7404 1.8650 29 1 4.2600 0.0225 1.4409 30 1 2.1519 -2.1327 3.9127 31 1 3.8910 -2.2527 4.2723 32 1 2.7924 -0.1951 5.8650 33 1 1.9566 -3.5715 8.7786 34 1 1.7249 -4.0872 11.0410 35 1 -0.2053 -3.6809 12.3878 36 1 2.0727 -1.3057 13.3839 37 1 2.1798 -3.6635 13.9739 38 1 2.0702 1.2482 9.8398 39 1 2.5042 0.4988 7.5392 40 1 2.1309 1.2860 2.5128 41 1 1.1215 0.0537 3.3856 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:22:54 Heat of formation + Delta-G solvation = -115.224199 kcal Electronic energy + Delta-G solvation = -27215.589573 eV Core-core repulsion = 22912.508393 eV Total energy + Delta-G solvation = -4303.081181 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.38688 -41.45462 -40.31743 -39.37527 -37.99122 -37.78354 -37.04137 -35.62363 -33.08313 -32.06302 -30.43637 -29.20599 -26.96799 -26.79545 -25.66113 -24.17037 -23.33981 -21.49558 -20.41826 -19.69244 -18.96572 -18.73852 -18.55332 -18.41667 -17.88189 -17.12124 -17.03395 -16.89745 -16.71517 -16.33282 -16.24948 -15.78265 -15.37139 -15.11814 -14.96149 -14.76870 -14.68063 -14.12530 -14.04190 -13.97364 -13.91422 -13.88417 -13.58810 -13.42394 -13.21949 -13.17838 -13.04669 -12.89227 -12.68758 -12.30672 -11.95723 -11.59389 -11.55726 -11.42469 -11.20895 -10.88074 -10.77978 -10.24120 -10.09161 -9.78006 -4.97610 -0.90027 -0.48557 0.02606 1.20966 1.54521 1.59923 1.84698 1.95386 2.02676 2.55949 2.65762 2.94257 3.04355 3.19760 3.30715 3.43919 3.47658 3.59936 3.63599 3.65173 3.71569 4.00020 4.08624 4.13091 4.17212 4.26065 4.29910 4.43571 4.62341 4.64606 4.66013 4.76924 4.79328 4.90921 4.93322 4.95476 4.97511 5.00331 5.01243 5.10254 5.25568 5.39459 5.61399 6.45908 6.47432 7.13042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.417 3.583 3 O -0.979 6.979 4 O -0.995 6.995 5 C -0.593 4.593 6 H 0.175 0.825 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.114 0.886 10 C 0.134 3.866 11 N -0.708 5.708 12 C 0.562 3.438 13 O -0.577 6.577 14 C -0.154 4.154 15 C -0.020 4.020 16 C -0.126 4.126 17 C -0.084 4.084 18 O -0.555 6.555 19 Si 0.744 3.256 20 C 0.112 3.888 21 F -0.133 7.133 22 C -0.153 4.153 23 C -0.036 4.036 24 C -0.110 4.110 25 H 0.153 0.847 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.418 0.582 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.397 0.603 36 H -0.271 1.271 37 H -0.292 1.292 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.112 0.888 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 2.692 2.055 3.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.606 3.394 3 O -0.976 6.976 4 O -0.992 6.992 5 C -0.705 4.705 6 H 0.193 0.807 7 C -0.152 4.152 8 C -0.124 4.124 9 H 0.132 0.868 10 C 0.010 3.990 11 N -0.360 5.360 12 C 0.350 3.650 13 O -0.457 6.457 14 C -0.157 4.157 15 C -0.039 4.039 16 C -0.127 4.127 17 C -0.192 4.192 18 O -0.366 6.366 19 Si 0.648 3.352 20 C 0.092 3.908 21 F -0.112 7.112 22 C -0.171 4.171 23 C -0.054 4.054 24 C -0.148 4.148 25 H 0.172 0.828 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.161 0.839 34 H 0.117 0.883 35 H 0.247 0.753 36 H -0.197 1.197 37 H -0.219 1.219 38 H 0.187 0.813 39 H 0.196 0.804 40 H 0.130 0.870 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.655 2.855 1.548 3.313 hybrid contribution -1.801 -0.674 1.031 2.182 sum -1.146 2.181 2.579 3.567 Atomic orbital electron populations 1.30109 1.22927 1.13534 1.13007 1.07584 0.79665 0.74468 0.77651 1.93546 1.80818 1.36045 1.87202 1.93543 1.80973 1.67804 1.56914 1.31688 1.07681 1.13364 1.17733 0.80695 1.22741 0.91083 1.04716 0.96630 1.22346 0.98643 0.97229 0.94159 0.86838 1.21221 1.01904 0.95996 0.79836 1.45721 1.71135 1.10768 1.08417 1.18248 0.76120 0.85455 0.85201 1.90808 1.53202 1.18246 1.83491 1.19951 1.07643 0.94871 0.93272 1.21019 0.92475 1.00959 0.89477 1.19287 1.05550 0.92272 0.95623 1.24834 0.87824 1.01306 1.05235 1.86550 1.22443 1.66361 1.61203 0.94659 0.88225 0.77437 0.74875 1.18266 0.99513 0.93029 0.79971 1.91536 1.91737 1.90706 1.37177 1.21421 1.02577 1.01091 0.92042 1.21532 0.93165 0.94139 0.96593 1.22948 1.00249 0.98149 0.93437 0.82831 0.85302 0.83380 0.88700 0.88360 0.90940 0.91394 0.74354 0.83931 0.88275 0.75259 1.19666 1.21907 0.81265 0.80383 0.86995 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.38 10.62 113.37 1.20 7.59 16 2 S 2.42 -7.09 5.30 -56.49 -0.30 -7.39 16 3 O -0.98 -4.33 17.35 -127.37 -2.21 -6.54 16 4 O -1.00 -7.37 18.10 -127.37 -2.31 -9.67 16 5 C -0.59 5.52 3.81 31.12 0.12 5.64 16 6 H 0.18 -2.37 7.72 -2.39 -0.02 -2.39 16 7 C -0.11 0.85 7.26 31.12 0.23 1.07 16 8 C -0.10 1.13 3.94 -10.27 -0.04 1.09 16 9 H 0.11 -1.53 8.14 -2.39 -0.02 -1.55 16 10 C 0.13 -0.96 5.35 86.38 0.46 -0.50 16 11 N -0.71 5.35 5.51 -466.09 -2.57 2.79 16 12 C 0.56 0.05 7.77 86.75 0.67 0.72 16 13 O -0.58 -5.24 16.34 -3.94 -0.06 -5.31 16 14 C -0.15 0.31 5.87 -20.09 -0.12 0.20 16 15 C -0.02 -0.02 9.21 22.52 0.21 0.19 16 16 C -0.13 -0.21 4.80 -19.86 -0.10 -0.31 16 17 C -0.08 -0.04 2.79 71.24 0.20 0.16 16 18 O -0.56 -1.88 12.86 -148.98 -1.92 -3.79 16 19 Si 0.74 0.04 30.77 68.60 2.11 2.15 16 20 C 0.11 0.17 6.67 22.47 0.15 0.32 16 21 F -0.13 -0.79 12.84 44.97 0.58 -0.21 16 22 C -0.15 0.74 10.01 22.28 0.22 0.97 16 23 C -0.04 0.28 9.54 22.52 0.21 0.50 16 24 C -0.11 1.33 7.16 31.12 0.22 1.55 16 25 H 0.15 -2.25 8.14 -2.39 -0.02 -2.27 16 26 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 27 H 0.15 -1.99 8.14 -2.39 -0.02 -2.01 16 28 H 0.09 -0.72 8.10 -2.39 -0.02 -0.74 16 29 H 0.10 -0.64 8.10 -2.39 -0.02 -0.66 16 30 H 0.07 -0.44 7.39 -2.39 -0.02 -0.46 16 31 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.42 -6.03 6.50 -92.71 -0.60 -6.63 16 33 H 0.14 0.24 7.59 -2.91 -0.02 0.22 16 34 H 0.10 -0.34 7.77 -2.39 -0.02 -0.36 16 35 H 0.40 -1.79 8.74 -74.06 -0.65 -2.44 16 36 H -0.27 -1.87 5.33 99.48 0.53 -1.34 16 37 H -0.29 -1.24 7.11 99.48 0.71 -0.53 16 38 H 0.17 -1.63 8.06 -2.91 -0.02 -1.65 16 39 H 0.18 -2.95 6.40 -2.91 -0.02 -2.97 16 40 H 0.11 -1.33 7.49 -2.38 -0.02 -1.35 16 41 H 0.11 -1.67 8.10 -2.39 -0.02 -1.69 16 Total: 0.00 -35.77 358.97 -3.33 -39.10 By element: Atomic # 1 Polarization: -30.01 SS G_CDS: -0.30 Total: -30.31 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 3.65 Total: 19.18 kcal Atomic # 7 Polarization: 5.35 SS G_CDS: -2.57 Total: 2.79 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -6.49 Total: -25.30 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.58 Total: -0.21 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 2.11 Total: 2.15 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -0.30 Total: -7.39 kcal Total: -35.77 -3.33 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.125 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds