Wall clock time and date at job start Sun Mar 7 2021 12:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42100 * 108.58113 * 2 1 4 4 O 1.42102 * 108.57917 * 228.97130 * 2 1 3 5 5 C 1.81401 * 101.91856 * 114.48797 * 2 1 3 6 6 H 1.08995 * 112.85102 * 53.79905 * 5 2 1 7 7 C 1.53784 * 113.61446 * 185.00325 * 5 2 1 8 8 C 1.53779 * 87.08291 * 139.97696 * 7 5 2 9 9 H 1.08996 * 113.61679 * 219.93198 * 8 7 5 10 10 C 1.53001 * 113.61276 * 89.11432 * 8 7 5 11 11 N 1.46498 * 109.46977 * 176.52659 * 10 8 7 12 12 C 1.34775 * 120.00229 * 179.97438 * 11 10 8 13 13 O 1.21282 * 119.99935 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00447 * 180.02562 * 12 11 10 15 15 N 1.46505 * 109.47408 * 180.02562 * 14 12 11 16 16 C 1.35031 * 125.93144 * 124.71756 * 15 14 12 17 17 C 1.35086 * 107.98042 * 179.89594 * 16 15 14 18 18 C 1.50696 * 126.07511 * 180.13699 * 17 16 15 19 19 O 1.42898 * 109.47076 * 105.23242 * 18 17 16 20 20 Si 1.86295 * 109.47494 * 345.23213 * 18 17 16 21 21 C 1.40849 * 107.84902 * 0.36707 * 17 16 15 22 22 C 1.48415 * 126.04163 * 179.75511 * 21 17 16 23 23 C 1.39329 * 120.11280 * 316.94471 * 22 21 17 24 24 C 1.38030 * 119.87251 * 179.69842 * 23 22 21 25 25 C 1.38317 * 120.11967 * 0.57567 * 24 23 22 26 26 C 1.38321 * 120.24063 * 359.72182 * 25 24 23 27 27 C 1.38019 * 120.12476 * 359.97438 * 26 25 24 28 28 N 1.31630 * 107.92144 * 359.77059 * 21 17 16 29 29 C 1.53779 * 87.17373 * 334.52238 * 8 7 5 30 30 H 1.09000 * 109.47354 * 305.51820 * 1 2 3 31 31 H 1.09004 * 109.46981 * 65.51286 * 1 2 3 32 32 H 1.08991 * 109.47355 * 185.50980 * 1 2 3 33 33 H 1.09000 * 113.61457 * 25.42921 * 7 5 2 34 34 H 1.09003 * 113.61264 * 254.52630 * 7 5 2 35 35 H 1.08999 * 109.47220 * 296.53060 * 10 8 7 36 36 H 1.08998 * 109.47066 * 56.53022 * 10 8 7 37 37 H 0.97003 * 120.00459 * 0.02562 * 11 10 8 38 38 H 1.08999 * 109.47254 * 300.00224 * 14 12 11 39 39 H 1.08998 * 109.46928 * 60.00122 * 14 12 11 40 40 H 1.07998 * 126.01384 * 359.97438 * 16 15 14 41 41 H 1.08998 * 109.47415 * 225.22886 * 18 17 16 42 42 H 0.96703 * 113.99776 * 299.99998 * 19 18 17 43 43 H 1.48500 * 110.00361 * 179.97438 * 20 18 17 44 44 H 1.48502 * 110.00033 * 301.31770 * 20 18 17 45 45 H 1.07997 * 120.06194 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.93599 * 180.29355 * 24 23 22 47 47 H 1.07999 * 119.87947 * 179.74122 * 25 24 23 48 48 H 1.08004 * 119.94086 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.06348 * 180.02562 * 27 26 25 50 50 H 1.09007 * 113.61293 * 140.01858 * 29 8 7 51 51 H 1.08991 * 113.61702 * 270.92706 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6152 6 1 1.6956 -1.6957 1.7677 7 6 3.6893 -0.7535 1.9509 8 6 3.2920 -0.3792 3.3885 9 1 3.9584 0.3494 3.8501 10 6 3.0230 -1.5896 4.2849 11 7 2.7349 -1.1341 5.6471 12 6 2.4653 -2.0321 6.6152 13 8 2.4617 -3.2175 6.3588 14 6 2.1685 -1.5635 8.0164 15 7 1.9110 -2.7225 8.8747 16 6 2.5551 -3.0156 10.0248 17 6 2.0294 -4.1581 10.5178 18 6 2.4467 -4.8506 11.7894 19 8 1.4586 -4.6306 12.7980 20 14 4.0817 -4.1653 12.3620 21 6 1.0254 -4.5899 9.6293 22 6 0.1912 -5.8082 9.7797 23 6 0.7730 -7.0084 10.1825 24 6 -0.0085 -8.1369 10.3268 25 6 -1.3647 -8.0806 10.0609 26 6 -1.9463 -6.8932 9.6547 27 6 -1.1753 -5.7571 9.5132 28 7 0.9579 -3.7223 8.6417 29 6 2.0174 0.2420 2.7934 30 1 -0.3634 0.5970 0.8364 31 1 -0.3633 0.4260 -0.9353 32 1 -0.3633 -1.0228 0.0987 33 1 4.2603 0.0216 1.4398 34 1 4.1439 -1.7407 1.8665 35 1 2.1680 -2.1447 3.8989 36 1 3.9007 -2.2358 4.2959 37 1 2.7374 -0.1860 5.8523 38 1 3.0233 -1.0086 8.4027 39 1 1.2908 -0.9173 8.0050 40 1 3.3499 -2.4375 10.4725 41 1 2.5457 -5.9203 11.6051 42 1 1.3175 -3.6985 13.0137 43 1 4.5041 -4.8397 13.6158 44 1 5.1106 -4.3594 11.3089 45 1 1.8327 -7.0546 10.3857 46 1 0.4405 -9.0666 10.6436 47 1 -1.9719 -8.9670 10.1711 48 1 -3.0057 -6.8548 9.4480 49 1 -1.6305 -4.8304 9.1964 50 1 1.1229 0.0581 3.3888 51 1 2.1320 1.2888 2.5123 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:22:57 Heat of formation + Delta-G solvation = 1.655482 kcal Electronic energy + Delta-G solvation = -35304.331446 eV Core-core repulsion = 30493.629424 eV Total energy + Delta-G solvation = -4810.702022 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.144 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.47693 -41.02385 -40.00313 -39.70044 -38.03539 -37.66014 -37.08566 -35.54477 -34.77117 -32.36010 -32.02851 -31.45129 -30.50118 -29.85678 -28.13555 -26.84974 -26.06083 -25.18684 -23.97760 -23.46945 -21.90450 -21.52095 -21.04873 -20.42154 -19.70701 -18.73110 -18.43303 -18.23870 -17.67076 -17.38115 -17.15886 -16.95511 -16.76494 -16.61955 -16.30108 -16.14349 -15.83840 -15.65785 -15.45092 -15.40523 -15.01627 -14.81746 -14.37326 -14.32068 -14.17095 -14.14683 -14.00826 -13.96519 -13.95068 -13.65809 -13.62765 -13.31642 -13.26059 -13.17209 -13.09026 -12.74926 -12.48541 -12.41560 -12.15646 -12.00103 -11.87301 -11.72805 -11.64884 -11.61226 -11.31317 -10.95526 -10.61610 -10.22282 -10.18287 -9.91600 -9.76814 -9.31613 -5.02008 -0.94711 0.09107 0.42526 0.82087 1.31579 1.41745 1.49708 1.63407 1.76010 1.80061 2.03684 2.08705 2.60726 2.85394 2.88907 3.25193 3.33213 3.38382 3.46027 3.59285 3.65207 3.69604 3.75649 3.94907 3.98188 4.03872 4.04800 4.12093 4.17542 4.18980 4.22766 4.22869 4.36499 4.43818 4.50718 4.53471 4.56643 4.59732 4.70330 4.77418 4.83427 4.86719 4.90696 4.92371 4.94919 4.95839 5.06592 5.21238 5.27618 5.36928 5.52347 5.53618 5.58655 5.94121 5.99974 6.47593 6.60077 6.91404 7.17666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.418 3.582 3 O -0.976 6.976 4 O -0.996 6.996 5 C -0.596 4.596 6 H 0.170 0.830 7 C -0.115 4.115 8 C -0.101 4.101 9 H 0.117 0.883 10 C 0.138 3.862 11 N -0.708 5.708 12 C 0.493 3.507 13 O -0.571 6.571 14 C 0.110 3.890 15 N -0.359 5.359 16 C 0.080 3.920 17 C -0.271 4.271 18 C -0.044 4.044 19 O -0.558 6.558 20 Si 0.802 3.198 21 C 0.106 3.894 22 C -0.025 4.025 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.109 4.109 28 N -0.292 5.292 29 C -0.106 4.106 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.424 0.576 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.229 0.771 41 H 0.091 0.909 42 H 0.392 0.608 43 H -0.301 1.301 44 H -0.286 1.286 45 H 0.122 0.878 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.145 0.855 49 H 0.120 0.880 50 H 0.108 0.892 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 8.922 5.253 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.973 6.973 4 O -0.993 6.993 5 C -0.707 4.707 6 H 0.188 0.812 7 C -0.154 4.154 8 C -0.120 4.120 9 H 0.135 0.865 10 C 0.014 3.986 11 N -0.363 5.363 12 C 0.278 3.722 13 O -0.449 6.449 14 C -0.014 4.014 15 N -0.141 5.141 16 C -0.065 4.065 17 C -0.282 4.282 18 C -0.153 4.153 19 O -0.365 6.365 20 Si 0.707 3.293 21 C -0.059 4.059 22 C -0.027 4.027 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.128 4.128 28 N -0.114 5.114 29 C -0.145 4.145 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.262 0.738 38 H 0.200 0.800 39 H 0.164 0.836 40 H 0.245 0.755 41 H 0.109 0.891 42 H 0.241 0.759 43 H -0.229 1.229 44 H -0.213 1.213 45 H 0.140 0.860 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.162 0.838 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.088 8.073 3.302 8.722 hybrid contribution -0.479 -1.069 0.366 1.227 sum -0.391 7.003 3.668 7.916 Atomic orbital electron populations 1.30103 1.22798 1.13477 1.13142 1.07576 0.79729 0.74490 0.77539 1.93548 1.80814 1.35850 1.87137 1.93543 1.81019 1.67852 1.56880 1.31735 1.07610 1.13242 1.18110 0.81241 1.22743 0.91121 1.04514 0.96983 1.22317 0.98686 0.97093 0.93933 0.86538 1.21078 1.00849 0.95854 0.80868 1.45689 1.71174 1.10854 1.08592 1.21161 0.76563 0.86216 0.88238 1.90840 1.51758 1.19036 1.83228 1.22047 1.08431 0.84668 0.86217 1.48174 1.27650 1.19927 1.18336 1.22888 0.98630 0.97045 0.87986 1.20646 1.04154 1.00889 1.02533 1.24726 1.03320 1.01708 0.85574 1.86481 1.61112 1.32554 1.56361 0.94106 0.71105 0.88069 0.75995 1.20805 0.97058 0.94903 0.93130 1.17988 0.92777 0.90766 1.01179 1.21243 1.00107 0.92209 0.99410 1.21374 0.94475 0.98578 0.99923 1.21567 0.95207 0.98738 0.98233 1.21392 1.00948 0.92458 0.99445 1.21281 0.92834 0.99320 0.99379 1.77691 1.12155 1.00092 1.21445 1.22982 1.00163 0.98074 0.93232 0.82712 0.85132 0.83553 0.88155 0.89203 0.92020 0.92345 0.73778 0.80031 0.83602 0.75482 0.89147 0.75905 1.22929 1.21306 0.86039 0.83866 0.83522 0.83753 0.86158 0.87374 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.97 10.62 113.37 1.20 7.17 16 2 S 2.42 -5.31 5.30 -56.49 -0.30 -5.61 16 3 O -0.98 -4.56 17.34 -127.37 -2.21 -6.77 16 4 O -1.00 -8.29 18.10 -127.37 -2.31 -10.59 16 5 C -0.60 4.84 3.82 31.22 0.12 4.96 16 6 H 0.17 -1.93 7.70 -2.39 -0.02 -1.95 16 7 C -0.11 0.73 7.26 31.12 0.23 0.96 16 8 C -0.10 1.05 3.93 -10.27 -0.04 1.01 16 9 H 0.12 -1.60 8.14 -2.39 -0.02 -1.62 16 10 C 0.14 -0.85 5.35 86.38 0.46 -0.39 16 11 N -0.71 6.66 5.56 -463.07 -2.57 4.09 16 12 C 0.49 -0.94 7.86 87.66 0.69 -0.25 16 13 O -0.57 -6.71 15.70 -3.03 -0.05 -6.76 16 14 C 0.11 -1.05 6.99 85.63 0.60 -0.45 16 15 N -0.36 -0.24 3.40 -351.92 -1.20 -1.44 16 16 C 0.08 -0.23 9.96 83.47 0.83 0.60 16 17 C -0.27 -0.99 5.35 -19.95 -0.11 -1.10 16 18 C -0.04 -0.09 2.52 71.23 0.18 0.09 16 19 O -0.56 -1.56 12.88 -148.98 -1.92 -3.48 16 20 Si 0.80 -2.74 30.73 68.60 2.11 -0.63 16 21 C 0.11 1.10 6.66 42.53 0.28 1.38 16 22 C -0.03 -0.28 5.74 -20.04 -0.12 -0.40 16 23 C -0.11 -1.03 8.88 22.48 0.20 -0.83 16 24 C -0.13 -0.76 10.03 22.24 0.22 -0.54 16 25 C -0.12 -0.56 10.04 22.31 0.22 -0.33 16 26 C -0.12 -0.73 10.03 22.24 0.22 -0.50 16 27 C -0.11 -1.04 9.78 22.48 0.22 -0.82 16 28 N -0.29 -3.11 11.67 -48.15 -0.56 -3.67 16 29 C -0.11 1.25 7.19 31.21 0.22 1.47 16 30 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 31 H 0.13 -1.12 8.14 -2.39 -0.02 -1.13 16 32 H 0.15 -1.82 8.14 -2.39 -0.02 -1.83 16 33 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 34 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 35 H 0.06 -0.21 7.37 -2.39 -0.02 -0.23 16 36 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.42 -7.52 8.47 -92.71 -0.79 -8.31 16 38 H 0.18 -3.72 8.07 -2.39 -0.02 -3.74 16 39 H 0.15 -2.16 8.14 -2.39 -0.02 -2.18 16 40 H 0.23 -3.22 6.40 -2.91 -0.02 -3.24 16 41 H 0.09 0.49 5.57 -2.39 -0.01 0.48 16 42 H 0.39 -2.45 8.70 -74.06 -0.64 -3.09 16 43 H -0.30 -1.36 7.11 99.48 0.71 -0.66 16 44 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 45 H 0.12 0.95 6.24 -2.91 -0.02 0.93 16 46 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 47 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 48 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 49 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 50 H 0.11 -1.62 8.10 -2.38 -0.02 -1.64 16 51 H 0.11 -1.36 7.49 -2.39 -0.02 -1.38 16 Total: 0.00 -50.74 438.30 -3.77 -54.51 By element: Atomic # 1 Polarization: -31.26 SS G_CDS: -0.41 Total: -31.67 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.64 Total: 12.03 kcal Atomic # 7 Polarization: 3.31 SS G_CDS: -4.33 Total: -1.03 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -6.48 Total: -27.60 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.11 Total: -0.63 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -0.30 Total: -5.61 kcal Total: -50.74 -3.77 -54.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.162 kcal (2) G-P(sol) polarization free energy of solvation -50.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds