Wall clock time and date at job start Sun Mar 7 2021 12:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42098 * 108.57803 * 2 1 4 4 O 1.42101 * 108.57658 * 228.97445 * 2 1 3 5 5 C 1.81402 * 101.92087 * 114.49118 * 2 1 3 6 6 H 1.08999 * 112.85329 * 53.79920 * 5 2 1 7 7 C 1.53780 * 113.61259 * 184.99980 * 5 2 1 8 8 C 1.53787 * 87.07939 * 140.06278 * 7 5 2 9 9 H 1.08998 * 113.60884 * 219.93294 * 8 7 5 10 10 C 1.52992 * 113.61296 * 89.11549 * 8 7 5 11 11 N 1.46499 * 109.46890 * 176.52510 * 10 8 7 12 12 C 1.34781 * 120.00074 * 179.97438 * 11 10 8 13 13 O 1.21620 * 119.99964 * 0.02562 * 12 11 10 14 14 C 1.47294 * 119.99929 * 180.02562 * 12 11 10 15 15 C 1.40369 * 120.04695 * 179.97438 * 14 12 11 16 16 O 1.35686 * 120.13452 * 0.02580 * 15 14 12 17 17 C 1.38319 * 119.72919 * 179.74703 * 15 14 12 18 18 C 1.39563 * 119.80756 * 0.54946 * 17 15 14 19 19 C 1.47570 * 119.95445 * 179.74302 * 18 17 15 20 20 C 1.36109 * 125.94726 * 179.72568 * 19 18 17 21 21 C 1.40795 * 106.73337 * 180.28004 * 20 19 18 22 22 C 1.34832 * 107.04964 * 359.60553 * 21 20 19 23 23 C 1.50703 * 125.65080 * 180.14040 * 22 21 20 24 24 O 1.42907 * 109.46811 * 65.27742 * 23 22 21 25 25 Si 1.86303 * 109.47105 * 185.27311 * 23 22 21 26 26 O 1.34226 * 108.69723 * 0.39803 * 22 21 20 27 27 C 1.39963 * 120.09099 * 359.46951 * 18 17 15 28 28 C 1.36386 * 120.28014 * 0.23455 * 27 18 17 29 29 C 1.53775 * 87.17194 * 334.52324 * 8 7 5 30 30 H 1.08997 * 109.47212 * 305.51317 * 1 2 3 31 31 H 1.09001 * 109.47515 * 65.51318 * 1 2 3 32 32 H 1.09000 * 109.47219 * 185.51011 * 1 2 3 33 33 H 1.08996 * 113.61856 * 25.51661 * 7 5 2 34 34 H 1.09000 * 113.61107 * 254.60926 * 7 5 2 35 35 H 1.08996 * 109.47501 * 56.53109 * 10 8 7 36 36 H 1.08997 * 109.47383 * 296.52695 * 10 8 7 37 37 H 0.97004 * 120.00349 * 0.02562 * 11 10 8 38 38 H 0.96695 * 113.99946 * 90.00493 * 16 15 14 39 39 H 1.08001 * 120.09666 * 180.29832 * 17 15 14 40 40 H 1.08002 * 126.62860 * 0.02562 * 20 19 18 41 41 H 1.07995 * 126.47362 * 179.73657 * 21 20 19 42 42 H 1.08995 * 109.47549 * 305.27249 * 23 22 21 43 43 H 0.96694 * 113.99895 * 59.99647 * 24 23 22 44 44 H 1.48500 * 110.00223 * 180.02562 * 25 23 22 45 45 H 1.48507 * 109.99809 * 301.32353 * 25 23 22 46 46 H 1.08003 * 119.85664 * 180.25257 * 27 18 17 47 47 H 1.07995 * 119.90943 * 180.02562 * 28 27 18 48 48 H 1.09007 * 113.61321 * 140.02486 * 29 8 7 49 49 H 1.09000 * 113.62011 * 270.92549 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 1 1.6957 -1.6959 1.7676 7 6 3.6893 -0.7537 1.9507 8 6 3.2919 -0.3816 3.3890 9 1 3.9582 0.3466 3.8515 10 6 3.0233 -1.5934 4.2835 11 7 2.7352 -1.1399 5.6464 12 6 2.4659 -2.0396 6.6132 13 8 2.4627 -3.2279 6.3543 14 6 2.1757 -1.5836 7.9834 15 6 1.8946 -2.5197 8.9909 16 8 1.8900 -3.8463 8.7061 17 6 1.6281 -2.0845 10.2765 18 6 1.6291 -0.7180 10.5606 19 6 1.3396 -0.2499 11.9298 20 6 1.3135 1.0470 12.3420 21 6 1.0041 1.0297 13.7154 22 6 0.8493 -0.2620 14.0695 23 6 0.5073 -0.7593 15.4504 24 8 -0.8046 -0.3168 15.8046 25 14 0.5611 -2.6215 15.4709 26 8 1.0559 -1.0320 12.9896 27 6 1.9099 0.2086 9.5499 28 6 2.1792 -0.2168 8.2824 29 6 2.0171 0.2401 2.7948 30 1 -0.3633 0.5969 0.8365 31 1 -0.3634 0.4259 -0.9352 32 1 -0.3634 -1.0229 0.0987 33 1 4.2601 0.0224 1.4408 34 1 4.1442 -1.7405 1.8648 35 1 3.9012 -2.2393 4.2936 36 1 2.1685 -2.1482 3.8968 37 1 2.7374 -0.1921 5.8529 38 1 2.7484 -4.2763 8.8213 39 1 1.4159 -2.7998 11.0574 40 1 1.4987 1.9202 11.7340 41 1 0.9069 1.8889 14.3625 42 1 1.2289 -0.3671 16.1670 43 1 -1.4992 -0.6289 15.2087 44 1 0.2250 -3.1245 16.8270 45 1 -0.3956 -3.1682 14.4752 46 1 1.9137 1.2649 9.7749 47 1 2.3955 0.5034 7.5072 48 1 1.1228 0.0550 3.3899 49 1 2.1314 1.2874 2.5152 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:23:12 Heat of formation + Delta-G solvation = -93.038573 kcal Electronic energy + Delta-G solvation = -35051.729273 eV Core-core repulsion = 30041.483684 eV Total energy + Delta-G solvation = -5010.245589 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.121 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -43.79746 -41.66693 -40.67785 -39.42218 -38.24324 -38.00237 -37.89656 -37.05353 -35.53378 -34.30394 -33.53668 -31.42339 -30.82674 -30.66468 -29.30071 -27.16623 -27.05557 -25.51557 -24.30923 -24.10070 -22.48233 -22.00254 -21.39797 -20.78394 -19.94227 -19.64702 -18.76245 -18.61620 -18.56816 -17.73025 -17.56281 -17.32276 -17.25020 -17.04627 -16.70460 -16.38980 -16.28161 -16.24995 -15.89638 -15.85055 -15.47687 -15.03042 -14.79567 -14.44136 -14.42321 -14.29566 -14.27760 -14.07397 -14.06001 -13.91157 -13.83022 -13.68963 -13.58061 -13.44080 -13.18218 -13.04447 -12.99744 -12.89802 -12.80521 -12.10239 -12.09784 -11.95339 -11.89832 -11.85068 -11.20739 -11.19620 -10.89039 -10.85104 -10.68932 -10.21500 -10.03623 -9.08483 -5.04806 -1.08430 -0.85782 0.03712 0.59244 1.05653 1.37151 1.39960 1.61855 1.65480 1.87331 1.90857 1.93208 2.43084 2.56683 2.69071 2.94618 3.01995 3.09348 3.17278 3.23141 3.28390 3.32032 3.46520 3.58935 3.73594 3.78353 3.81292 3.83592 3.88233 3.96320 4.08538 4.13282 4.25272 4.28476 4.30825 4.31677 4.48273 4.52597 4.55612 4.59434 4.60187 4.62203 4.70243 4.71546 4.78126 4.92253 4.95343 5.01425 5.10362 5.25764 5.32009 5.38952 5.88999 6.17072 6.33036 6.62398 7.11974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.097 4.097 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.728 5.728 12 C 0.559 3.441 13 O -0.517 6.517 14 C -0.166 4.166 15 C 0.179 3.821 16 O -0.475 6.475 17 C -0.141 4.141 18 C 0.031 3.969 19 C 0.022 3.978 20 C -0.177 4.177 21 C -0.173 4.173 22 C -0.043 4.043 23 C -0.035 4.035 24 O -0.520 6.520 25 Si 0.698 3.302 26 O -0.162 6.162 27 C -0.116 4.116 28 C -0.064 4.064 29 C -0.113 4.113 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.399 0.601 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.139 0.861 43 H 0.381 0.619 44 H -0.247 1.247 45 H -0.255 1.255 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.089 0.911 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 3.296 3.126 4.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.013 3.987 11 N -0.382 5.382 12 C 0.346 3.654 13 O -0.393 6.393 14 C -0.170 4.170 15 C 0.132 3.868 16 O -0.286 6.286 17 C -0.159 4.159 18 C 0.031 3.969 19 C -0.027 4.027 20 C -0.196 4.196 21 C -0.192 4.192 22 C -0.093 4.093 23 C -0.144 4.144 24 O -0.327 6.327 25 Si 0.597 3.403 26 O -0.059 6.059 27 C -0.134 4.134 28 C -0.083 4.083 29 C -0.151 4.151 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.229 0.771 44 H -0.172 1.172 45 H -0.179 1.179 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.107 0.893 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.075 2.012 2.724 3.553 hybrid contribution -1.312 0.829 0.405 1.604 sum -0.237 2.841 3.128 4.233 Atomic orbital electron populations 1.30233 1.26615 1.11692 1.11896 1.07827 0.78505 0.75882 0.77314 1.93608 1.79212 1.34153 1.86320 1.93616 1.79085 1.66982 1.53822 1.31826 1.07736 1.12273 1.19966 0.82825 1.22594 0.90670 1.04611 0.95716 1.22456 0.98068 0.97727 0.95168 0.88467 1.21170 1.02091 0.95297 0.80160 1.45867 1.72731 1.10119 1.09500 1.17963 0.77140 0.85959 0.84352 1.90859 1.50159 1.15876 1.82385 1.20463 1.07820 0.94186 0.94509 1.18288 0.94103 0.84286 0.90077 1.84776 1.36856 1.16818 1.90158 1.21601 1.02470 0.95363 0.96498 1.17761 0.98047 0.92919 0.88204 1.20323 1.06765 0.88870 0.86787 1.21916 1.05509 0.96394 0.95738 1.21587 1.04871 0.96981 0.95775 1.22947 1.06812 0.90352 0.89210 1.24362 0.87450 1.13349 0.89254 1.86668 1.15155 1.75646 1.55234 0.94490 0.91573 0.73085 0.81200 1.83950 1.68442 1.37154 1.16331 1.20708 1.01127 0.99844 0.91741 1.20809 0.96842 0.93879 0.96766 1.22897 0.99739 0.98266 0.94199 0.85261 0.85177 0.85285 0.87960 0.88750 0.90450 0.90793 0.76415 0.74179 0.83823 0.82599 0.82651 0.84395 0.77077 1.17158 1.17893 0.84316 0.84589 0.89259 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.65 10.62 101.05 1.07 3.73 16 2 S 2.42 -3.46 5.30 -107.50 -0.57 -4.03 16 3 O -0.94 -1.77 17.35 -57.83 -1.00 -2.78 16 4 O -0.94 -2.87 18.10 -57.83 -1.05 -3.91 16 5 C -0.61 2.31 3.82 -25.78 -0.10 2.21 16 6 H 0.15 -0.84 7.69 -51.93 -0.40 -1.24 16 7 C -0.10 0.31 7.26 -25.92 -0.19 0.12 16 8 C -0.11 0.47 3.93 -89.81 -0.35 0.12 16 9 H 0.10 -0.50 8.14 -51.93 -0.42 -0.92 16 10 C 0.14 -0.32 5.35 -4.05 -0.02 -0.34 16 11 N -0.73 1.61 5.50 -61.43 -0.34 1.27 16 12 C 0.56 0.66 7.75 -12.58 -0.10 0.56 16 13 O -0.52 -2.58 15.14 -16.70 -0.25 -2.83 16 14 C -0.17 -0.01 5.89 -104.79 -0.62 -0.63 16 15 C 0.18 0.19 6.71 -38.75 -0.26 -0.07 16 16 O -0.47 -0.89 11.56 -40.72 -0.47 -1.36 16 17 C -0.14 -0.04 9.65 -39.06 -0.38 -0.42 16 18 C 0.03 -0.01 5.87 -104.95 -0.62 -0.63 16 19 C 0.02 0.01 7.02 -36.54 -0.26 -0.25 16 20 C -0.18 0.10 10.26 -39.38 -0.40 -0.31 16 21 C -0.17 0.02 10.78 -39.82 -0.43 -0.41 16 22 C -0.04 0.00 6.21 -35.51 -0.22 -0.22 16 23 C -0.03 0.04 2.98 36.01 0.11 0.14 16 24 O -0.52 -0.07 12.88 -35.23 -0.45 -0.53 16 25 Si 0.70 -0.83 32.11 -169.99 -5.46 -6.29 16 26 O -0.16 -0.14 8.79 4.72 0.04 -0.10 16 27 C -0.12 0.27 9.48 -39.60 -0.38 -0.11 16 28 C -0.06 0.17 9.47 -39.62 -0.38 -0.20 16 29 C -0.11 0.52 7.19 -25.78 -0.19 0.33 16 30 H 0.13 -0.75 8.14 -51.93 -0.42 -1.17 16 31 H 0.13 -0.51 8.14 -51.92 -0.42 -0.93 16 32 H 0.13 -0.70 8.14 -51.92 -0.42 -1.12 16 33 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 34 H 0.09 -0.34 8.10 -51.93 -0.42 -0.76 16 35 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 36 H 0.07 -0.12 7.37 -51.93 -0.38 -0.50 16 37 H 0.40 -2.00 6.48 -40.82 -0.26 -2.27 16 38 H 0.40 -0.77 9.06 45.56 0.41 -0.36 16 39 H 0.14 -0.03 7.90 -52.49 -0.41 -0.45 16 40 H 0.16 -0.46 7.24 -52.49 -0.38 -0.84 16 41 H 0.16 -0.19 8.06 -52.49 -0.42 -0.62 16 42 H 0.14 -0.37 7.96 -51.93 -0.41 -0.78 16 43 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 44 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 45 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 46 H 0.14 -0.63 6.95 -52.48 -0.37 -0.99 16 47 H 0.14 -0.80 6.38 -52.49 -0.33 -1.13 16 48 H 0.09 -0.49 8.10 -51.92 -0.42 -0.91 16 49 H 0.11 -0.51 7.50 -51.93 -0.39 -0.90 16 LS Contribution 427.49 15.07 6.44 6.44 Total: 0.00 -15.83 427.49 -12.33 -28.17 By element: Atomic # 1 Polarization: -12.14 SS G_CDS: -5.53 Total: -17.67 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.70 Total: 3.62 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -0.34 Total: 1.27 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -3.19 Total: -11.51 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.46 Total: -6.29 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -0.57 Total: -4.03 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -15.83 -12.33 -28.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.870 kcal (2) G-P(sol) polarization free energy of solvation -15.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds