Wall clock time and date at job start Sun Mar 7 2021 12:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42098 * 108.57803 * 2 1 4 4 O 1.42101 * 108.57658 * 228.97445 * 2 1 3 5 5 C 1.81402 * 101.92087 * 114.49118 * 2 1 3 6 6 H 1.08999 * 112.85329 * 53.79920 * 5 2 1 7 7 C 1.53780 * 113.61259 * 184.99980 * 5 2 1 8 8 C 1.53787 * 87.07939 * 140.06278 * 7 5 2 9 9 H 1.08998 * 113.60884 * 219.93294 * 8 7 5 10 10 C 1.52992 * 113.61296 * 89.11549 * 8 7 5 11 11 N 1.46499 * 109.46890 * 176.52510 * 10 8 7 12 12 C 1.34781 * 120.00074 * 179.97438 * 11 10 8 13 13 O 1.21620 * 119.99964 * 0.02562 * 12 11 10 14 14 C 1.47294 * 119.99929 * 180.02562 * 12 11 10 15 15 C 1.40369 * 120.04695 * 179.97438 * 14 12 11 16 16 O 1.35686 * 120.13452 * 0.02580 * 15 14 12 17 17 C 1.38319 * 119.72919 * 179.74703 * 15 14 12 18 18 C 1.39563 * 119.80756 * 0.54946 * 17 15 14 19 19 C 1.47570 * 119.95445 * 179.74302 * 18 17 15 20 20 C 1.36109 * 125.94726 * 179.72568 * 19 18 17 21 21 C 1.40795 * 106.73337 * 180.28004 * 20 19 18 22 22 C 1.34832 * 107.04964 * 359.60553 * 21 20 19 23 23 C 1.50703 * 125.65080 * 180.14040 * 22 21 20 24 24 O 1.42907 * 109.46811 * 65.27742 * 23 22 21 25 25 Si 1.86303 * 109.47105 * 185.27311 * 23 22 21 26 26 O 1.34226 * 108.69723 * 0.39803 * 22 21 20 27 27 C 1.39963 * 120.09099 * 359.46951 * 18 17 15 28 28 C 1.36386 * 120.28014 * 0.23455 * 27 18 17 29 29 C 1.53775 * 87.17194 * 334.52324 * 8 7 5 30 30 H 1.08997 * 109.47212 * 305.51317 * 1 2 3 31 31 H 1.09001 * 109.47515 * 65.51318 * 1 2 3 32 32 H 1.09000 * 109.47219 * 185.51011 * 1 2 3 33 33 H 1.08996 * 113.61856 * 25.51661 * 7 5 2 34 34 H 1.09000 * 113.61107 * 254.60926 * 7 5 2 35 35 H 1.08996 * 109.47501 * 56.53109 * 10 8 7 36 36 H 1.08997 * 109.47383 * 296.52695 * 10 8 7 37 37 H 0.97004 * 120.00349 * 0.02562 * 11 10 8 38 38 H 0.96695 * 113.99946 * 90.00493 * 16 15 14 39 39 H 1.08001 * 120.09666 * 180.29832 * 17 15 14 40 40 H 1.08002 * 126.62860 * 0.02562 * 20 19 18 41 41 H 1.07995 * 126.47362 * 179.73657 * 21 20 19 42 42 H 1.08995 * 109.47549 * 305.27249 * 23 22 21 43 43 H 0.96694 * 113.99895 * 59.99647 * 24 23 22 44 44 H 1.48500 * 110.00223 * 180.02562 * 25 23 22 45 45 H 1.48507 * 109.99809 * 301.32353 * 25 23 22 46 46 H 1.08003 * 119.85664 * 180.25257 * 27 18 17 47 47 H 1.07995 * 119.90943 * 180.02562 * 28 27 18 48 48 H 1.09007 * 113.61321 * 140.02486 * 29 8 7 49 49 H 1.09000 * 113.62011 * 270.92549 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 1 1.6957 -1.6959 1.7676 7 6 3.6893 -0.7537 1.9507 8 6 3.2919 -0.3816 3.3890 9 1 3.9582 0.3466 3.8515 10 6 3.0233 -1.5934 4.2835 11 7 2.7352 -1.1399 5.6464 12 6 2.4659 -2.0396 6.6132 13 8 2.4627 -3.2279 6.3543 14 6 2.1757 -1.5836 7.9834 15 6 1.8946 -2.5197 8.9909 16 8 1.8900 -3.8463 8.7061 17 6 1.6281 -2.0845 10.2765 18 6 1.6291 -0.7180 10.5606 19 6 1.3396 -0.2499 11.9298 20 6 1.3135 1.0470 12.3420 21 6 1.0041 1.0297 13.7154 22 6 0.8493 -0.2620 14.0695 23 6 0.5073 -0.7593 15.4504 24 8 -0.8046 -0.3168 15.8046 25 14 0.5611 -2.6215 15.4709 26 8 1.0559 -1.0320 12.9896 27 6 1.9099 0.2086 9.5499 28 6 2.1792 -0.2168 8.2824 29 6 2.0171 0.2401 2.7948 30 1 -0.3633 0.5969 0.8365 31 1 -0.3634 0.4259 -0.9352 32 1 -0.3634 -1.0229 0.0987 33 1 4.2601 0.0224 1.4408 34 1 4.1442 -1.7405 1.8648 35 1 3.9012 -2.2393 4.2936 36 1 2.1685 -2.1482 3.8968 37 1 2.7374 -0.1921 5.8529 38 1 2.7484 -4.2763 8.8213 39 1 1.4159 -2.7998 11.0574 40 1 1.4987 1.9202 11.7340 41 1 0.9069 1.8889 14.3625 42 1 1.2289 -0.3671 16.1670 43 1 -1.4992 -0.6289 15.2087 44 1 0.2250 -3.1245 16.8270 45 1 -0.3956 -3.1682 14.4752 46 1 1.9137 1.2649 9.7749 47 1 2.3955 0.5034 7.5072 48 1 1.1228 0.0550 3.3899 49 1 2.1314 1.2874 2.5152 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:23:10 Heat of formation + Delta-G solvation = -101.427633 kcal Electronic energy + Delta-G solvation = -35052.093050 eV Core-core repulsion = 30041.483684 eV Total energy + Delta-G solvation = -5010.609366 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.121 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.73835 -41.60843 -40.46014 -39.38135 -38.20684 -38.00853 -37.86666 -37.05995 -35.51124 -34.23821 -33.43929 -31.34392 -30.69042 -30.42209 -29.13420 -26.99808 -26.80537 -25.33216 -24.20550 -23.99213 -22.41330 -21.95822 -21.33278 -20.58722 -19.84108 -19.53459 -18.67949 -18.52537 -18.41325 -17.68684 -17.52211 -17.23886 -17.13291 -16.92769 -16.67277 -16.31736 -16.21511 -16.14047 -15.82650 -15.69124 -15.40560 -14.87421 -14.63906 -14.43098 -14.27455 -14.11695 -13.97216 -13.96207 -13.90096 -13.79590 -13.62051 -13.57628 -13.48273 -13.24822 -13.19717 -13.06531 -12.96361 -12.73746 -12.68254 -12.19853 -11.97451 -11.90065 -11.60917 -11.56445 -11.12862 -11.05819 -10.84619 -10.83096 -10.62672 -10.13430 -9.94157 -9.00795 -4.99995 -0.92114 -0.78226 0.15928 0.64944 1.12312 1.43795 1.45242 1.69625 1.82428 1.88082 1.93942 2.04041 2.63350 2.65851 2.91487 3.03095 3.21184 3.28475 3.36347 3.41329 3.49410 3.59068 3.65947 3.74715 3.87603 3.99936 4.02292 4.07269 4.15341 4.24005 4.25896 4.37661 4.40510 4.44326 4.60002 4.63020 4.64727 4.71357 4.74866 4.80632 4.88396 4.92072 4.93535 4.95433 4.98171 5.07908 5.11930 5.22825 5.24658 5.39830 5.43929 5.55151 5.96413 6.30754 6.48701 6.71026 7.17821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.416 3.584 3 O -0.977 6.977 4 O -0.995 6.995 5 C -0.594 4.594 6 H 0.173 0.827 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.114 0.886 10 C 0.135 3.865 11 N -0.710 5.710 12 C 0.555 3.445 13 O -0.565 6.565 14 C -0.178 4.178 15 C 0.160 3.840 16 O -0.496 6.496 17 C -0.154 4.154 18 C 0.025 3.975 19 C 0.005 3.995 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.052 4.052 23 C -0.033 4.033 24 O -0.535 6.535 25 Si 0.763 3.237 26 O -0.177 6.177 27 C -0.110 4.110 28 C -0.050 4.050 29 C -0.109 4.109 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.409 0.591 39 H 0.136 0.864 40 H 0.183 0.817 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.389 0.611 44 H -0.281 1.281 45 H -0.298 1.298 46 H 0.170 0.830 47 H 0.175 0.825 48 H 0.107 0.893 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 5.794 3.732 6.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.605 3.395 3 O -0.975 6.975 4 O -0.992 6.992 5 C -0.705 4.705 6 H 0.191 0.809 7 C -0.152 4.152 8 C -0.123 4.123 9 H 0.132 0.868 10 C 0.012 3.988 11 N -0.364 5.364 12 C 0.343 3.657 13 O -0.445 6.445 14 C -0.182 4.182 15 C 0.113 3.887 16 O -0.310 6.310 17 C -0.173 4.173 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.191 4.191 21 C -0.200 4.200 22 C -0.102 4.102 23 C -0.143 4.143 24 O -0.343 6.343 25 Si 0.668 3.332 26 O -0.075 6.075 27 C -0.128 4.128 28 C -0.068 4.068 29 C -0.147 4.147 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.255 0.745 38 H 0.269 0.731 39 H 0.154 0.846 40 H 0.200 0.800 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.239 0.761 44 H -0.207 1.207 45 H -0.224 1.224 46 H 0.187 0.813 47 H 0.192 0.808 48 H 0.126 0.874 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.789 4.573 3.289 5.688 hybrid contribution -1.271 0.024 0.267 1.299 sum -0.482 4.597 3.557 5.832 Atomic orbital electron populations 1.30109 1.22809 1.13559 1.13100 1.07609 0.79747 0.74508 0.77604 1.93548 1.80824 1.35920 1.87164 1.93543 1.81003 1.67816 1.56844 1.31733 1.07660 1.13299 1.17849 0.80929 1.22738 0.91102 1.04705 0.96647 1.22339 0.98690 0.97187 0.94133 0.86806 1.21171 1.01409 0.95978 0.80256 1.45722 1.71127 1.10570 1.08946 1.18197 0.76643 0.85655 0.85163 1.90833 1.52584 1.17909 1.83159 1.20521 1.08685 0.95326 0.93685 1.18505 0.95267 0.84119 0.90797 1.84729 1.38014 1.17836 1.90384 1.21570 1.03506 0.95997 0.96197 1.17963 0.98121 0.92902 0.88611 1.20609 1.07534 0.89382 0.86921 1.22250 1.04362 0.96721 0.95730 1.21841 1.04706 0.97119 0.96359 1.23146 1.07048 0.90691 0.89313 1.24462 0.87478 1.12889 0.89424 1.86639 1.15873 1.75884 1.55893 0.93667 0.90172 0.72213 0.77160 1.83937 1.68821 1.37886 1.16843 1.21067 0.99666 1.00920 0.91102 1.21188 0.94886 0.93106 0.97642 1.22997 1.00191 0.98178 0.93361 0.82762 0.85175 0.83407 0.88214 0.88802 0.91625 0.91343 0.74490 0.73118 0.84602 0.79992 0.81571 0.82499 0.76072 1.20748 1.22448 0.81294 0.80771 0.87413 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.05 10.62 113.37 1.20 7.26 16 2 S 2.42 -5.54 5.30 -56.49 -0.30 -5.84 16 3 O -0.98 -4.66 17.35 -127.37 -2.21 -6.87 16 4 O -0.99 -7.96 18.10 -127.37 -2.30 -10.27 16 5 C -0.59 4.94 3.82 31.21 0.12 5.06 16 6 H 0.17 -2.10 7.69 -2.39 -0.02 -2.12 16 7 C -0.11 0.74 7.26 31.12 0.23 0.97 16 8 C -0.10 1.02 3.93 -10.27 -0.04 0.98 16 9 H 0.11 -1.44 8.14 -2.39 -0.02 -1.46 16 10 C 0.14 -0.76 5.35 86.38 0.46 -0.30 16 11 N -0.71 4.19 5.50 -466.51 -2.57 1.63 16 12 C 0.56 1.27 7.75 86.62 0.67 1.94 16 13 O -0.57 -6.41 15.14 16.90 0.26 -6.16 16 14 C -0.18 0.04 5.89 -19.97 -0.12 -0.08 16 15 C 0.16 0.54 6.71 22.81 0.15 0.70 16 16 O -0.50 -3.07 11.56 -69.05 -0.80 -3.87 16 17 C -0.15 -0.28 9.65 22.61 0.22 -0.07 16 18 C 0.02 -0.03 5.87 -20.08 -0.12 -0.15 16 19 C 0.00 0.00 7.02 24.24 0.17 0.17 16 20 C -0.17 0.49 10.26 22.40 0.23 0.72 16 21 C -0.18 0.25 10.78 22.11 0.24 0.49 16 22 C -0.05 0.00 6.21 24.90 0.15 0.16 16 23 C -0.03 0.07 2.98 71.24 0.21 0.29 16 24 O -0.53 -0.12 12.88 -148.98 -1.92 -2.04 16 25 Si 0.76 -0.95 32.11 68.60 2.20 1.25 16 26 O -0.18 -0.40 8.79 -6.02 -0.05 -0.46 16 27 C -0.11 0.77 9.48 22.26 0.21 0.98 16 28 C -0.05 0.39 9.47 22.24 0.21 0.60 16 29 C -0.11 1.23 7.19 31.21 0.22 1.45 16 30 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 31 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 32 H 0.15 -1.89 8.14 -2.39 -0.02 -1.91 16 33 H 0.10 -0.59 8.10 -2.39 -0.02 -0.61 16 34 H 0.09 -0.61 8.10 -2.39 -0.02 -0.63 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.07 -0.27 7.37 -2.39 -0.02 -0.29 16 37 H 0.42 -5.42 6.48 -92.71 -0.60 -6.02 16 38 H 0.41 -0.39 9.06 -74.06 -0.67 -1.06 16 39 H 0.14 0.30 7.90 -2.91 -0.02 0.27 16 40 H 0.18 -1.67 7.24 -2.91 -0.02 -1.69 16 41 H 0.17 -0.68 8.06 -2.91 -0.02 -0.70 16 42 H 0.16 -0.99 7.96 -2.39 -0.02 -1.01 16 43 H 0.39 -1.75 8.70 -74.06 -0.64 -2.39 16 44 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 45 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 46 H 0.17 -2.23 6.95 -2.91 -0.02 -2.25 16 47 H 0.18 -2.81 6.38 -2.91 -0.02 -2.83 16 48 H 0.11 -1.55 8.10 -2.38 -0.02 -1.57 16 49 H 0.11 -1.30 7.50 -2.39 -0.02 -1.32 16 Total: 0.00 -39.93 427.49 -4.10 -44.03 By element: Atomic # 1 Polarization: -31.75 SS G_CDS: -0.84 Total: -32.59 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 4.43 Total: 21.17 kcal Atomic # 7 Polarization: 4.19 SS G_CDS: -2.57 Total: 1.63 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -7.03 Total: -29.65 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.20 Total: 1.25 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -0.30 Total: -5.84 kcal Total: -39.93 -4.10 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.397 kcal (2) G-P(sol) polarization free energy of solvation -39.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds