Wall clock time and date at job start Sun Mar 7 2021 12:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38979 * 119.95523 * 2 1 4 4 O 1.35709 * 119.90873 * 359.97438 * 3 2 1 5 5 C 1.39015 * 120.17583 * 180.02562 * 3 2 1 6 6 C 1.50698 * 119.95530 * 179.97438 * 5 3 2 7 7 O 1.42898 * 109.47093 * 284.99953 * 6 5 3 8 8 Si 1.86301 * 109.47155 * 164.99964 * 6 5 3 9 9 C 1.37681 * 120.08574 * 359.97438 * 5 3 2 10 10 C 1.39754 * 119.91662 * 359.97438 * 9 5 3 11 11 C 1.47602 * 120.08878 * 180.02562 * 10 9 5 12 12 O 1.21581 * 120.00163 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99901 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46805 * 179.97438 * 14 13 11 16 16 H 1.09001 * 112.84925 * 316.18958 * 15 14 13 17 17 C 1.53781 * 113.61273 * 87.50296 * 15 14 13 18 18 C 1.53778 * 87.08321 * 89.11518 * 17 15 14 19 19 H 1.09006 * 113.61387 * 270.87917 * 18 17 15 20 20 S 1.81400 * 113.69480 * 139.99162 * 18 17 15 21 21 C 1.81401 * 101.92171 * 82.45944 * 20 18 17 22 22 O 1.42092 * 108.58124 * 196.94897 * 20 18 17 23 23 O 1.42106 * 108.57657 * 327.97457 * 20 18 17 24 24 C 1.53775 * 87.08309 * 25.42912 * 18 17 15 25 25 C 1.37718 * 119.95692 * 179.72436 * 2 1 3 26 26 H 1.09002 * 109.47152 * 90.00151 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00251 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00232 * 1 2 3 29 29 H 0.96693 * 114.00620 * 90.00566 * 4 3 2 30 30 H 1.09001 * 109.46929 * 44.99883 * 6 5 3 31 31 H 0.96699 * 114.00488 * 59.99715 * 7 6 5 32 32 H 1.48504 * 109.99720 * 299.99748 * 8 6 5 33 33 H 1.48491 * 110.00021 * 61.31558 * 8 6 5 34 34 H 1.08007 * 120.03823 * 180.02562 * 9 5 3 35 35 H 0.96993 * 119.99924 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.46877 * 299.99366 * 14 13 11 37 37 H 1.08997 * 109.47232 * 59.99691 * 14 13 11 38 38 H 1.09006 * 113.61034 * 203.66337 * 17 15 14 39 39 H 1.08998 * 113.61615 * 334.56277 * 17 15 14 40 40 H 1.08996 * 109.47154 * 60.00312 * 21 20 18 41 41 H 1.09000 * 109.46854 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47261 * 300.00438 * 21 20 18 43 43 H 1.09002 * 113.61448 * 220.02203 * 24 18 17 44 44 H 1.08998 * 113.61513 * 89.11932 * 24 18 17 45 45 H 1.08005 * 120.04651 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2095 -0.0005 6 6 4.3386 2.5180 -0.0011 7 8 4.2715 3.1043 -1.3026 8 14 6.1200 2.2159 0.4529 9 6 4.2859 0.0208 -0.0005 10 6 3.5918 -1.1922 0.0005 11 6 4.3328 -2.4687 0.0011 12 8 5.5486 -2.4659 0.0011 13 7 3.6617 -3.6375 0.0016 14 6 4.3971 -4.9045 0.0028 15 6 3.4055 -6.0697 0.0038 16 1 2.5792 -5.9216 0.6990 17 6 2.9596 -6.5003 -1.4035 18 6 4.1644 -7.4559 -1.4074 19 1 5.0783 -7.0047 -1.7940 20 16 3.8095 -9.0733 -2.1480 21 6 4.0001 -8.7250 -3.9181 22 8 4.8261 -9.9846 -1.7540 23 8 2.4497 -9.3988 -1.8946 24 6 4.0754 -7.4484 0.1277 25 6 2.1947 -1.1932 0.0057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.3219 2.7183 0.8826 30 1 3.8880 3.1941 0.7256 31 1 3.3718 3.2895 -1.6048 32 1 6.2032 1.6064 1.8045 33 1 6.7543 1.3209 -0.5479 34 1 5.3659 0.0259 -0.0005 35 1 2.6917 -3.6397 0.0020 36 1 5.0242 -4.9614 -0.8870 37 1 5.0236 -4.9602 0.8930 38 1 1.9969 -7.0113 -1.4192 39 1 3.0302 -5.7056 -2.1462 40 1 5.0151 -8.3788 -4.1130 41 1 3.8096 -9.6333 -4.4897 42 1 3.2898 -7.9534 -4.2151 43 1 5.0468 -7.4191 0.6213 44 1 3.4178 -8.2187 0.5307 45 1 1.6548 -2.1286 0.0098 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:24:07 Heat of formation + Delta-G solvation = -134.150644 kcal Electronic energy + Delta-G solvation = -29351.400858 eV Core-core repulsion = 25042.733130 eV Total energy + Delta-G solvation = -4308.667728 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89251 -40.88292 -39.95311 -38.04025 -37.77010 -37.64095 -37.08588 -35.77597 -34.08575 -32.17351 -30.47396 -29.26813 -28.09749 -26.91947 -26.86887 -25.68204 -24.19306 -22.27281 -21.68886 -20.47074 -19.74560 -19.64275 -18.76922 -18.52209 -18.04491 -17.80870 -17.17180 -16.95676 -16.87306 -16.65367 -16.48176 -16.15826 -15.71586 -15.46921 -15.25835 -15.01533 -14.84819 -14.30359 -14.15595 -14.03927 -13.97506 -13.93039 -13.80013 -13.65093 -13.43510 -13.30043 -13.24467 -13.09352 -12.93695 -12.91451 -12.75495 -12.40723 -12.28910 -12.00915 -11.68176 -11.64854 -11.42720 -11.18060 -11.12427 -10.94226 -10.38732 -10.07586 -9.78298 -4.95288 -0.94875 -0.54517 -0.06547 1.24504 1.45889 1.54629 1.79395 1.86741 1.90615 2.42964 2.60533 2.86806 2.95883 3.23223 3.30926 3.35887 3.39847 3.48018 3.53679 3.58071 3.79604 3.92242 4.00514 4.04393 4.10483 4.21181 4.29135 4.31326 4.34557 4.49050 4.53576 4.57037 4.61749 4.68003 4.78777 4.81884 4.87779 4.89392 4.90097 4.93605 4.98197 5.12027 5.14951 5.21268 5.26776 5.50403 6.29352 6.58925 6.62730 6.95834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 C 0.154 3.846 4 O -0.490 6.490 5 C -0.156 4.156 6 C -0.072 4.072 7 O -0.547 6.547 8 Si 0.799 3.201 9 C -0.082 4.082 10 C -0.151 4.151 11 C 0.556 3.444 12 O -0.585 6.585 13 N -0.704 5.704 14 C 0.132 3.868 15 C -0.105 4.105 16 H 0.114 0.886 17 C -0.109 4.109 18 C -0.596 4.596 19 H 0.174 0.826 20 S 2.421 3.579 21 C -0.644 4.644 22 O -0.993 6.993 23 O -0.977 6.977 24 C -0.110 4.110 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.416 0.584 30 H 0.104 0.896 31 H 0.379 0.621 32 H -0.271 1.271 33 H -0.306 1.306 34 H 0.111 0.889 35 H 0.418 0.582 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.341 5.245 0.658 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C 0.108 3.892 4 O -0.305 6.305 5 C -0.157 4.157 6 C -0.181 4.181 7 O -0.354 6.354 8 Si 0.704 3.296 9 C -0.101 4.101 10 C -0.154 4.154 11 C 0.344 3.656 12 O -0.466 6.466 13 N -0.357 5.357 14 C 0.009 3.991 15 C -0.125 4.125 16 H 0.132 0.868 17 C -0.147 4.147 18 C -0.707 4.707 19 H 0.192 0.808 20 S 2.610 3.390 21 C -0.796 4.796 22 O -0.990 6.990 23 O -0.974 6.974 24 C -0.149 4.149 25 C -0.074 4.074 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.278 0.722 30 H 0.122 0.878 31 H 0.228 0.772 32 H -0.198 1.198 33 H -0.234 1.234 34 H 0.129 0.871 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.149 0.851 42 H 0.171 0.829 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.468 3.685 0.745 6.636 hybrid contribution -1.056 -0.177 -0.208 1.091 sum -6.524 3.508 0.537 7.427 Atomic orbital electron populations 1.20778 0.87488 1.04592 1.03642 1.20523 0.98665 0.91557 1.00566 1.18333 0.87953 0.86446 0.96492 1.84696 1.75177 1.34951 1.35654 1.20755 0.94569 0.95914 1.04420 1.25099 1.12392 0.91408 0.89246 1.86700 1.33979 1.82617 1.32089 0.92759 0.75895 0.84999 0.75980 1.20988 0.99363 0.92218 0.97498 1.19844 0.94830 0.92333 1.08438 1.18384 0.86682 0.84755 0.75770 1.90797 1.15616 1.88248 1.51962 1.45703 1.11305 1.04595 1.74061 1.21258 0.94176 0.80949 1.02700 1.22348 0.98672 0.92510 0.98951 0.86832 1.22934 0.95377 0.98113 0.98256 1.31703 1.10702 1.19660 1.08618 0.80850 1.07486 0.73789 0.77957 0.79768 1.30116 1.13764 1.13521 1.22209 1.93544 1.60887 1.62059 1.82512 1.93548 1.35678 1.83078 1.85102 1.22718 1.03564 0.98115 0.90542 1.21417 0.91054 0.99616 0.95339 0.90278 0.90187 0.89310 0.72206 0.87794 0.77166 1.19767 1.23435 0.87142 0.74305 0.91002 0.91583 0.86746 0.87613 0.83452 0.85140 0.82888 0.88769 0.88150 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.99 9.79 71.24 0.70 1.69 16 2 C -0.11 0.45 5.89 -19.81 -0.12 0.34 16 3 C 0.15 -0.26 6.62 22.63 0.15 -0.11 16 4 O -0.49 3.09 11.41 -90.30 -1.03 2.06 16 5 C -0.16 -0.50 5.27 -19.81 -0.10 -0.60 16 6 C -0.07 -0.09 2.33 71.24 0.17 0.08 16 7 O -0.55 -1.83 12.65 -148.98 -1.89 -3.71 16 8 Si 0.80 3.00 30.40 68.60 2.09 5.09 16 9 C -0.08 -0.66 8.20 22.50 0.18 -0.47 16 10 C -0.15 -0.59 5.87 -20.08 -0.12 -0.71 16 11 C 0.56 3.39 7.76 86.71 0.67 4.06 16 12 O -0.58 -9.34 16.34 -3.97 -0.06 -9.41 16 13 N -0.70 2.26 5.51 -466.20 -2.57 -0.31 16 14 C 0.13 -0.49 5.35 86.38 0.46 -0.03 16 15 C -0.11 0.90 3.94 -10.27 -0.04 0.86 16 16 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 17 C -0.11 1.09 7.16 31.12 0.22 1.31 16 18 C -0.60 4.61 3.82 31.12 0.12 4.73 16 19 H 0.17 -2.05 7.72 -2.38 -0.02 -2.07 16 20 S 2.42 -5.15 5.34 -56.49 -0.30 -5.45 16 21 C -0.64 5.79 10.62 113.37 1.20 6.99 16 22 O -0.99 -7.95 18.10 -127.37 -2.30 -10.26 16 23 O -0.98 -4.84 17.20 -127.37 -2.19 -7.03 16 24 C -0.11 0.65 7.26 31.12 0.23 0.87 16 25 C -0.06 0.22 9.18 22.50 0.21 0.42 16 26 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.08 -0.80 7.52 -2.39 -0.02 -0.82 16 28 H 0.09 -1.09 8.08 -2.38 -0.02 -1.10 16 29 H 0.42 -6.21 9.06 -74.06 -0.67 -6.88 16 30 H 0.10 -0.50 7.82 -2.39 -0.02 -0.52 16 31 H 0.38 -0.53 8.59 -74.06 -0.64 -1.17 16 32 H -0.27 -1.96 7.11 99.48 0.71 -1.25 16 33 H -0.31 -4.03 6.81 99.48 0.68 -3.36 16 34 H 0.11 1.46 4.51 -2.91 -0.01 1.45 16 35 H 0.42 -4.36 6.49 -92.71 -0.60 -4.96 16 36 H 0.07 -0.18 7.39 -2.39 -0.02 -0.20 16 37 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.11 -1.14 7.37 -2.38 -0.02 -1.16 16 39 H 0.11 -1.36 8.10 -2.39 -0.02 -1.38 16 40 H 0.15 -1.82 8.14 -2.39 -0.02 -1.84 16 41 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H 0.15 -2.07 8.14 -2.39 -0.02 -2.09 16 43 H 0.09 -0.55 8.10 -2.39 -0.02 -0.56 16 44 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 45 H 0.17 -2.01 6.39 -2.91 -0.02 -2.03 16 Total: 0.00 -38.11 384.01 -5.17 -43.28 By element: Atomic # 1 Polarization: -32.84 SS G_CDS: -0.84 Total: -33.68 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 3.93 Total: 19.42 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -2.57 Total: -0.31 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -7.48 Total: -28.35 kcal Atomic # 14 Polarization: 3.00 SS G_CDS: 2.09 Total: 5.09 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -0.30 Total: -5.45 kcal Total: -38.11 -5.17 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.867 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds