Wall clock time and date at job start Sun Mar 7 2021 12:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 108.57494 * 2 1 4 4 O 1.42093 * 108.57831 * 131.02445 * 2 1 3 5 5 C 1.81393 * 101.92151 * 245.51493 * 2 1 3 6 6 H 1.09007 * 112.85303 * 53.80195 * 5 2 1 7 7 C 1.53784 * 113.61512 * 184.99779 * 5 2 1 8 8 C 1.53787 * 87.08002 * 139.98233 * 7 5 2 9 9 H 1.09002 * 113.61084 * 220.02147 * 8 7 5 10 10 C 1.52999 * 113.61609 * 89.19955 * 8 7 5 11 11 N 1.46495 * 109.47096 * 174.99653 * 10 8 7 12 12 C 1.34779 * 119.99975 * 180.02562 * 11 10 8 13 13 O 1.21275 * 119.99852 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00004 * 180.02562 * 12 11 10 15 15 O 1.42899 * 109.47067 * 180.02562 * 14 12 11 16 16 C 1.35902 * 116.99923 * 180.02562 * 15 14 12 17 17 C 1.38728 * 120.05466 * 359.71779 * 16 15 14 18 18 C 1.38147 * 119.94185 * 179.75066 * 17 16 15 19 19 C 1.38261 * 120.05527 * 0.50709 * 18 17 16 20 20 C 1.50704 * 119.94412 * 179.74706 * 19 18 17 21 21 O 1.42906 * 109.47013 * 120.02103 * 20 19 18 22 22 Si 1.86295 * 109.47200 * 0.02562 * 20 19 18 23 23 C 1.38264 * 120.11494 * 359.77099 * 19 18 17 24 24 C 1.38146 * 120.05032 * 359.97269 * 23 19 18 25 25 C 1.53782 * 113.61509 * 282.49729 * 5 2 1 26 26 H 1.09002 * 109.47124 * 174.48534 * 1 2 3 27 27 H 1.09001 * 109.46975 * 54.48655 * 1 2 3 28 28 H 1.09004 * 109.47147 * 294.48618 * 1 2 3 29 29 H 1.08993 * 113.61496 * 254.52806 * 7 5 2 30 30 H 1.09000 * 113.61119 * 25.43431 * 7 5 2 31 31 H 1.08992 * 109.47432 * 295.00312 * 10 8 7 32 32 H 1.08999 * 109.46540 * 55.00113 * 10 8 7 33 33 H 0.96998 * 120.00332 * 0.02562 * 11 10 8 34 34 H 1.09006 * 109.47107 * 300.00403 * 14 12 11 35 35 H 1.09000 * 109.47097 * 60.00046 * 14 12 11 36 36 H 1.08004 * 120.03235 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.96940 * 180.23655 * 18 17 16 38 38 H 1.08995 * 109.47390 * 240.02156 * 20 19 18 39 39 H 0.96698 * 113.99935 * 299.99833 * 21 20 19 40 40 H 1.48501 * 110.00047 * 179.97438 * 22 20 19 41 41 H 1.48507 * 110.00115 * 301.31821 * 22 20 19 42 42 H 1.07996 * 119.97869 * 179.97438 * 23 19 18 43 43 H 1.08007 * 120.02431 * 179.97438 * 24 23 19 44 44 H 1.08996 * 113.61395 * 334.56773 * 25 5 2 45 45 H 1.09006 * 113.61587 * 105.46998 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 1.0161 5 6 2.1887 -0.7356 -1.6152 6 1 1.6958 -0.2203 -2.4397 7 6 3.6894 -0.9769 -1.8490 8 6 3.2922 -2.3072 -2.5104 9 1 3.9578 -3.1340 -2.2624 10 6 3.0251 -2.1893 -4.0123 11 7 2.7730 -3.5205 -4.5694 12 6 2.5124 -3.6625 -5.8842 13 8 2.4872 -2.6883 -6.6060 14 6 2.2524 -5.0319 -6.4572 15 8 2.0043 -4.9219 -7.8602 16 6 1.7494 -6.0743 -8.5339 17 6 1.7442 -7.2867 -7.8595 18 6 1.4797 -8.4562 -8.5457 19 6 1.2308 -8.4202 -9.9052 20 6 0.9482 -9.6982 -10.6523 21 8 -0.3483 -9.6245 -11.2488 22 14 1.0062 -11.1354 -9.4684 23 6 1.2411 -7.2138 -10.5807 24 6 1.4998 -6.0410 -9.8981 25 6 2.0177 -2.2634 -1.6509 26 1 -0.3633 -1.0229 -0.0988 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3634 0.4260 0.9353 29 1 4.1439 -0.2653 -2.5382 30 1 4.2604 -1.1002 -0.9287 31 1 2.1542 -1.5552 -4.1778 32 1 3.8936 -1.7490 -4.5022 33 1 2.7935 -4.2998 -3.9922 34 1 3.1230 -5.6665 -6.2911 35 1 1.3836 -5.4717 -5.9676 36 1 1.9423 -7.3158 -6.7982 37 1 1.4717 -9.3999 -8.0204 38 1 1.6986 -9.8378 -11.4303 39 1 -1.0669 -9.5004 -10.6138 40 1 0.7285 -12.4017 -10.1928 41 1 2.3393 -11.2039 -8.8176 42 1 1.0468 -7.1883 -11.6427 43 1 1.5082 -5.0989 -10.4262 44 1 2.1316 -2.7384 -0.6765 45 1 1.1226 -2.5904 -2.1803 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:25:32 Heat of formation + Delta-G solvation = -107.601819 kcal Electronic energy + Delta-G solvation = -28181.369880 eV Core-core repulsion = 23873.853395 eV Total energy + Delta-G solvation = -4307.516485 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.66231 -41.03651 -40.11731 -38.98179 -38.02869 -37.16743 -37.07908 -35.66367 -32.51428 -31.81649 -30.90108 -30.59890 -28.58734 -27.18013 -26.29553 -25.36774 -23.99072 -22.45225 -21.83484 -20.69171 -19.87534 -19.58515 -18.67982 -18.42028 -18.12606 -17.61107 -17.28840 -17.12449 -17.03752 -16.86162 -16.41439 -16.12885 -16.01690 -15.90010 -15.60546 -15.07061 -14.84792 -14.72941 -14.45811 -14.30675 -14.30176 -14.19246 -13.95840 -13.81172 -13.61914 -13.56678 -13.43813 -13.21024 -13.07334 -12.93828 -12.27405 -12.17964 -12.12807 -12.09243 -11.97826 -11.91107 -11.77633 -11.26385 -10.98835 -10.46203 -10.35669 -10.10038 -9.26903 -5.09648 -1.11254 0.23593 0.24602 1.25703 1.31052 1.36761 1.57175 1.59519 1.92927 2.38438 2.42924 2.61043 2.66688 2.97890 3.12798 3.18592 3.27370 3.39831 3.44461 3.62203 3.66956 3.70985 3.76875 3.78227 3.80633 3.82469 3.92230 4.07534 4.21295 4.24722 4.26591 4.38511 4.46440 4.47144 4.51222 4.56129 4.56806 4.59939 4.65231 4.89345 4.89789 5.08953 5.12894 5.19263 5.45574 5.62388 6.10975 6.26626 6.55070 6.95361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.610 4.610 6 H 0.154 0.846 7 C -0.097 4.097 8 C -0.114 4.114 9 H 0.098 0.902 10 C 0.137 3.863 11 N -0.727 5.727 12 C 0.515 3.485 13 O -0.511 6.511 14 C 0.040 3.960 15 O -0.289 6.289 16 C 0.133 3.867 17 C -0.206 4.206 18 C -0.076 4.076 19 C -0.157 4.157 20 C -0.064 4.064 21 O -0.541 6.541 22 Si 0.687 3.313 23 C -0.051 4.051 24 C -0.145 4.145 25 C -0.112 4.112 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.404 0.596 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.379 0.621 40 H -0.255 1.255 41 H -0.259 1.259 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -4.315 3.476 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.719 4.719 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.134 4.134 9 H 0.116 0.884 10 C 0.013 3.987 11 N -0.382 5.382 12 C 0.300 3.700 13 O -0.385 6.385 14 C -0.038 4.038 15 O -0.201 6.201 16 C 0.088 3.912 17 C -0.225 4.225 18 C -0.094 4.094 19 C -0.157 4.157 20 C -0.175 4.175 21 O -0.346 6.346 22 Si 0.589 3.411 23 C -0.069 4.069 24 C -0.164 4.164 25 C -0.150 4.150 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.226 0.774 40 H -0.180 1.180 41 H -0.184 1.184 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.128 0.872 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.712 -3.910 3.187 5.327 hybrid contribution -0.309 -0.270 -0.494 0.642 sum -2.021 -4.181 2.693 5.368 Atomic orbital electron populations 1.30233 1.26588 1.11634 1.11955 1.07819 0.78510 0.75642 0.77513 1.93618 1.79084 1.34321 1.86454 1.93609 1.79220 1.67174 1.53280 1.31785 1.07727 1.08726 1.23632 0.82809 1.22604 0.90707 0.97592 1.02711 1.22453 0.98157 0.99329 0.93462 0.88384 1.21199 1.02444 0.83858 0.91154 1.45764 1.73444 1.10505 1.08500 1.20036 0.77315 0.90422 0.82243 1.90801 1.48692 1.40246 1.58723 1.22460 1.03268 0.96154 0.81968 1.86173 1.85075 1.29051 1.19782 1.19068 0.95547 0.84559 0.92040 1.21167 1.08712 0.91985 1.00616 1.20791 0.97577 0.97599 0.93399 1.20261 1.05233 0.96175 0.94058 1.24983 0.87737 1.01484 1.03269 1.86505 1.14763 1.95953 1.37403 0.94821 0.86286 0.77066 0.82895 1.20862 0.95283 0.90528 1.00219 1.20542 1.04764 0.99788 0.91268 1.22849 0.99648 0.89995 1.02553 0.85268 0.85288 0.85163 0.88742 0.87922 0.90665 0.90355 0.76143 0.88677 0.88602 0.85054 0.85297 0.86957 0.77385 1.17983 1.18385 0.84725 0.84632 0.87237 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.97 10.62 101.05 1.07 4.04 16 2 S 2.42 -4.53 5.30 -107.50 -0.57 -5.10 16 3 O -0.94 -2.54 18.10 -57.83 -1.05 -3.59 16 4 O -0.94 -1.41 17.34 -57.83 -1.00 -2.41 16 5 C -0.61 2.64 3.81 -25.92 -0.10 2.55 16 6 H 0.15 -0.93 7.72 -51.92 -0.40 -1.33 16 7 C -0.10 0.36 7.26 -25.91 -0.19 0.17 16 8 C -0.11 0.55 3.94 -89.80 -0.35 0.19 16 9 H 0.10 -0.56 8.14 -51.93 -0.42 -0.99 16 10 C 0.14 -0.43 5.35 -4.04 -0.02 -0.45 16 11 N -0.73 2.61 5.56 -60.30 -0.33 2.27 16 12 C 0.52 -0.03 7.91 -10.98 -0.09 -0.12 16 13 O -0.51 -2.67 16.50 -14.35 -0.24 -2.90 16 14 C 0.04 -0.09 5.22 36.01 0.19 0.10 16 15 O -0.29 -0.55 9.67 -39.34 -0.38 -0.93 16 16 C 0.13 0.13 6.69 -39.22 -0.26 -0.13 16 17 C -0.21 0.23 9.04 -39.43 -0.36 -0.12 16 18 C -0.08 0.09 8.66 -39.61 -0.34 -0.25 16 19 C -0.16 0.04 5.39 -104.60 -0.56 -0.52 16 20 C -0.06 0.04 2.82 36.01 0.10 0.14 16 21 O -0.54 0.05 12.77 -35.23 -0.45 -0.40 16 22 Si 0.69 -1.10 29.78 -169.99 -5.06 -6.16 16 23 C -0.05 -0.02 9.60 -39.61 -0.38 -0.40 16 24 C -0.15 -0.17 9.99 -39.43 -0.39 -0.56 16 25 C -0.11 0.59 7.16 -25.92 -0.19 0.41 16 26 H 0.13 -0.82 8.14 -51.92 -0.42 -1.24 16 27 H 0.13 -0.76 8.14 -51.92 -0.42 -1.19 16 28 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 29 H 0.09 -0.37 8.10 -51.93 -0.42 -0.79 16 30 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 31 H 0.08 -0.19 7.40 -51.93 -0.38 -0.57 16 32 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.40 -2.77 8.47 -40.82 -0.35 -3.11 16 34 H 0.10 -0.44 7.65 -51.93 -0.40 -0.83 16 35 H 0.10 -0.48 7.67 -51.93 -0.40 -0.88 16 36 H 0.13 -0.53 6.30 -52.48 -0.33 -0.86 16 37 H 0.13 -0.41 4.87 -52.48 -0.26 -0.67 16 38 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 39 H 0.38 -1.49 8.70 45.56 0.40 -1.10 16 40 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 41 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 42 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 43 H 0.14 0.11 8.06 -52.48 -0.42 -0.32 16 44 H 0.11 -0.58 7.48 -51.93 -0.39 -0.97 16 45 H 0.09 -0.58 8.10 -51.93 -0.42 -1.00 16 LS Contribution 388.05 15.07 5.85 5.85 Total: 0.00 -15.78 388.05 -11.45 -27.23 By element: Atomic # 1 Polarization: -12.54 SS G_CDS: -6.34 Total: -18.88 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.87 Total: 5.03 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -0.33 Total: 2.27 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -3.12 Total: -10.24 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.06 Total: -6.16 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -0.57 Total: -5.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -15.78 -11.45 -27.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.374 kcal (2) G-P(sol) polarization free energy of solvation -15.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds