Wall clock time and date at job start Sun Mar 7 2021 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 108.57494 * 2 1 4 4 O 1.42093 * 108.57831 * 131.02445 * 2 1 3 5 5 C 1.81393 * 101.92151 * 245.51493 * 2 1 3 6 6 H 1.09007 * 112.85303 * 53.80195 * 5 2 1 7 7 C 1.53784 * 113.61512 * 184.99779 * 5 2 1 8 8 C 1.53787 * 87.08002 * 139.98233 * 7 5 2 9 9 H 1.09002 * 113.61084 * 220.02147 * 8 7 5 10 10 C 1.52999 * 113.61609 * 89.19955 * 8 7 5 11 11 N 1.46495 * 109.47096 * 174.99653 * 10 8 7 12 12 C 1.34779 * 119.99975 * 180.02562 * 11 10 8 13 13 O 1.21275 * 119.99852 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00004 * 180.02562 * 12 11 10 15 15 O 1.42899 * 109.47067 * 180.02562 * 14 12 11 16 16 C 1.35902 * 116.99923 * 180.02562 * 15 14 12 17 17 C 1.38728 * 120.05466 * 359.71779 * 16 15 14 18 18 C 1.38147 * 119.94185 * 179.75066 * 17 16 15 19 19 C 1.38261 * 120.05527 * 0.50709 * 18 17 16 20 20 C 1.50704 * 119.94412 * 179.74706 * 19 18 17 21 21 O 1.42906 * 109.47013 * 120.02103 * 20 19 18 22 22 Si 1.86295 * 109.47200 * 0.02562 * 20 19 18 23 23 C 1.38264 * 120.11494 * 359.77099 * 19 18 17 24 24 C 1.38146 * 120.05032 * 359.97269 * 23 19 18 25 25 C 1.53782 * 113.61509 * 282.49729 * 5 2 1 26 26 H 1.09002 * 109.47124 * 174.48534 * 1 2 3 27 27 H 1.09001 * 109.46975 * 54.48655 * 1 2 3 28 28 H 1.09004 * 109.47147 * 294.48618 * 1 2 3 29 29 H 1.08993 * 113.61496 * 254.52806 * 7 5 2 30 30 H 1.09000 * 113.61119 * 25.43431 * 7 5 2 31 31 H 1.08992 * 109.47432 * 295.00312 * 10 8 7 32 32 H 1.08999 * 109.46540 * 55.00113 * 10 8 7 33 33 H 0.96998 * 120.00332 * 0.02562 * 11 10 8 34 34 H 1.09006 * 109.47107 * 300.00403 * 14 12 11 35 35 H 1.09000 * 109.47097 * 60.00046 * 14 12 11 36 36 H 1.08004 * 120.03235 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.96940 * 180.23655 * 18 17 16 38 38 H 1.08995 * 109.47390 * 240.02156 * 20 19 18 39 39 H 0.96698 * 113.99935 * 299.99833 * 21 20 19 40 40 H 1.48501 * 110.00047 * 179.97438 * 22 20 19 41 41 H 1.48507 * 110.00115 * 301.31821 * 22 20 19 42 42 H 1.07996 * 119.97869 * 179.97438 * 23 19 18 43 43 H 1.08007 * 120.02431 * 179.97438 * 24 23 19 44 44 H 1.08996 * 113.61395 * 334.56773 * 25 5 2 45 45 H 1.09006 * 113.61587 * 105.46998 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 1.0161 5 6 2.1887 -0.7356 -1.6152 6 1 1.6958 -0.2203 -2.4397 7 6 3.6894 -0.9769 -1.8490 8 6 3.2922 -2.3072 -2.5104 9 1 3.9578 -3.1340 -2.2624 10 6 3.0251 -2.1893 -4.0123 11 7 2.7730 -3.5205 -4.5694 12 6 2.5124 -3.6625 -5.8842 13 8 2.4872 -2.6883 -6.6060 14 6 2.2524 -5.0319 -6.4572 15 8 2.0043 -4.9219 -7.8602 16 6 1.7494 -6.0743 -8.5339 17 6 1.7442 -7.2867 -7.8595 18 6 1.4797 -8.4562 -8.5457 19 6 1.2308 -8.4202 -9.9052 20 6 0.9482 -9.6982 -10.6523 21 8 -0.3483 -9.6245 -11.2488 22 14 1.0062 -11.1354 -9.4684 23 6 1.2411 -7.2138 -10.5807 24 6 1.4998 -6.0410 -9.8981 25 6 2.0177 -2.2634 -1.6509 26 1 -0.3633 -1.0229 -0.0988 27 1 -0.3633 0.5970 -0.8365 28 1 -0.3634 0.4260 0.9353 29 1 4.1439 -0.2653 -2.5382 30 1 4.2604 -1.1002 -0.9287 31 1 2.1542 -1.5552 -4.1778 32 1 3.8936 -1.7490 -4.5022 33 1 2.7935 -4.2998 -3.9922 34 1 3.1230 -5.6665 -6.2911 35 1 1.3836 -5.4717 -5.9676 36 1 1.9423 -7.3158 -6.7982 37 1 1.4717 -9.3999 -8.0204 38 1 1.6986 -9.8378 -11.4303 39 1 -1.0669 -9.5004 -10.6138 40 1 0.7285 -12.4017 -10.1928 41 1 2.3393 -11.2039 -8.8176 42 1 1.0468 -7.1883 -11.6427 43 1 1.5082 -5.0989 -10.4262 44 1 2.1316 -2.7384 -0.6765 45 1 1.1226 -2.5904 -2.1803 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:25:31 Heat of formation + Delta-G solvation = -116.834961 kcal Electronic energy + Delta-G solvation = -28181.770259 eV Core-core repulsion = 23873.853395 eV Total energy + Delta-G solvation = -4307.916864 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.57412 -40.86293 -39.95316 -38.92776 -38.00662 -37.11168 -37.05638 -35.56724 -32.43432 -31.73488 -30.68752 -30.33629 -28.35308 -26.81981 -26.21558 -25.11949 -23.90526 -22.38651 -21.71768 -20.44440 -19.68197 -19.48503 -18.48859 -18.29340 -18.01133 -17.46722 -17.12147 -17.03856 -16.89947 -16.77082 -16.30779 -16.01539 -15.86851 -15.74367 -15.49975 -14.94463 -14.73112 -14.62422 -14.31558 -14.12790 -13.99239 -13.92427 -13.74329 -13.61130 -13.53582 -13.42246 -13.24433 -13.18900 -13.06367 -12.74176 -12.24303 -12.05836 -12.04326 -11.96959 -11.72712 -11.62528 -11.56581 -11.11978 -10.86395 -10.39815 -10.20673 -10.03597 -9.21522 -4.97972 -0.91715 0.28333 0.31589 1.35384 1.44942 1.48535 1.65614 1.83513 2.00240 2.58291 2.64465 2.66767 2.92677 3.28141 3.41255 3.44276 3.56790 3.61279 3.64558 3.76335 3.84866 3.97059 4.06269 4.08204 4.11284 4.15347 4.25989 4.31856 4.39671 4.43622 4.51421 4.59399 4.62686 4.67591 4.74039 4.88918 4.93657 4.95283 4.97969 4.98163 5.16546 5.22289 5.26149 5.36085 5.50846 5.70440 6.27313 6.47711 6.80778 7.13061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.416 3.584 3 O -0.996 6.996 4 O -0.978 6.978 5 C -0.594 4.594 6 H 0.174 0.826 7 C -0.115 4.115 8 C -0.103 4.103 9 H 0.114 0.886 10 C 0.135 3.865 11 N -0.706 5.706 12 C 0.512 3.488 13 O -0.576 6.576 14 C 0.035 3.965 15 O -0.321 6.321 16 C 0.121 3.879 17 C -0.199 4.199 18 C -0.076 4.076 19 C -0.161 4.161 20 C -0.075 4.075 21 O -0.559 6.559 22 Si 0.784 3.216 23 C -0.062 4.062 24 C -0.167 4.167 25 C -0.107 4.107 26 H 0.155 0.845 27 H 0.148 0.852 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.102 0.898 39 H 0.395 0.605 40 H -0.305 1.305 41 H -0.281 1.281 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -6.337 4.699 8.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.605 3.395 3 O -0.993 6.993 4 O -0.976 6.976 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.154 4.154 8 C -0.123 4.123 9 H 0.132 0.868 10 C 0.011 3.989 11 N -0.361 5.361 12 C 0.298 3.702 13 O -0.454 6.454 14 C -0.042 4.042 15 O -0.234 6.234 16 C 0.076 3.924 17 C -0.217 4.217 18 C -0.093 4.093 19 C -0.162 4.162 20 C -0.184 4.184 21 O -0.367 6.367 22 Si 0.690 3.310 23 C -0.080 4.080 24 C -0.186 4.186 25 C -0.146 4.146 26 H 0.173 0.827 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.262 0.738 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.119 0.881 39 H 0.245 0.755 40 H -0.233 1.233 41 H -0.207 1.207 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.737 -5.918 4.493 7.918 hybrid contribution -0.002 0.332 -0.928 0.985 sum -2.739 -5.587 3.565 7.171 Atomic orbital electron populations 1.30100 1.22639 1.13833 1.12877 1.07620 0.79813 0.74065 0.78018 1.93542 1.81053 1.37180 1.87553 1.93547 1.80874 1.67441 1.55689 1.31688 1.07527 1.09669 1.21653 0.80826 1.22752 0.91234 0.98632 1.02786 1.22330 0.98796 0.99015 0.92112 0.86812 1.21175 1.01639 0.84015 0.92035 1.45613 1.71584 1.11187 1.07713 1.20543 0.76296 0.90645 0.82725 1.90777 1.51916 1.42340 1.60399 1.22774 1.06004 0.95155 0.80295 1.86129 1.85390 1.29954 1.21948 1.19192 0.96029 0.85228 0.91935 1.21514 1.07164 0.90776 1.02230 1.21076 0.96624 0.98714 0.92927 1.20357 1.05320 0.95744 0.94778 1.25200 0.87452 1.02282 1.03472 1.86465 1.15486 1.96007 1.38767 0.93750 0.83673 0.72977 0.80588 1.20890 0.95936 0.90895 1.00249 1.20616 1.06095 0.99682 0.92192 1.22945 1.00195 0.88607 1.02803 0.82661 0.83368 0.85224 0.88968 0.88323 0.91100 0.91987 0.73828 0.85767 0.85117 0.81546 0.82912 0.88094 0.75512 1.23346 1.20737 0.85093 0.85692 0.86896 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.65 10.62 113.37 1.20 7.85 16 2 S 2.42 -7.21 5.30 -56.49 -0.30 -7.51 16 3 O -1.00 -7.53 18.10 -127.37 -2.30 -9.83 16 4 O -0.98 -4.14 17.34 -127.37 -2.21 -6.35 16 5 C -0.59 5.49 3.81 31.12 0.12 5.61 16 6 H 0.17 -2.31 7.72 -2.38 -0.02 -2.32 16 7 C -0.12 0.82 7.26 31.12 0.23 1.04 16 8 C -0.10 1.12 3.94 -10.26 -0.04 1.08 16 9 H 0.11 -1.55 8.14 -2.39 -0.02 -1.57 16 10 C 0.13 -0.94 5.35 86.38 0.46 -0.48 16 11 N -0.71 6.25 5.56 -463.08 -2.57 3.68 16 12 C 0.51 -0.41 7.91 87.66 0.69 0.29 16 13 O -0.58 -6.72 16.50 16.02 0.26 -6.45 16 14 C 0.04 -0.22 5.22 71.24 0.37 0.15 16 15 O -0.32 -1.20 9.67 -73.41 -0.71 -1.91 16 16 C 0.12 0.20 6.69 22.50 0.15 0.35 16 17 C -0.20 0.91 9.04 22.37 0.20 1.11 16 18 C -0.08 0.33 8.66 22.25 0.19 0.53 16 19 C -0.16 0.14 5.39 -19.85 -0.11 0.03 16 20 C -0.07 0.10 2.82 71.24 0.20 0.30 16 21 O -0.56 0.07 12.77 -148.98 -1.90 -1.83 16 22 Si 0.78 -3.30 29.78 68.60 2.04 -1.26 16 23 C -0.06 -0.12 9.60 22.25 0.21 0.09 16 24 C -0.17 -0.63 9.99 22.37 0.22 -0.40 16 25 C -0.11 1.35 7.16 31.12 0.22 1.57 16 26 H 0.16 -2.39 8.14 -2.39 -0.02 -2.41 16 27 H 0.15 -2.05 8.14 -2.39 -0.02 -2.07 16 28 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 29 H 0.09 -0.62 8.10 -2.39 -0.02 -0.64 16 30 H 0.10 -0.61 8.10 -2.39 -0.02 -0.63 16 31 H 0.07 -0.40 7.40 -2.39 -0.02 -0.42 16 32 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.42 -7.10 8.47 -92.71 -0.79 -7.88 16 34 H 0.12 -1.54 7.65 -2.38 -0.02 -1.56 16 35 H 0.13 -1.78 7.67 -2.39 -0.02 -1.80 16 36 H 0.17 -2.06 6.30 -2.91 -0.02 -2.08 16 37 H 0.15 -1.46 4.87 -2.91 -0.01 -1.48 16 38 H 0.10 0.05 7.96 -2.39 -0.02 0.03 16 39 H 0.39 -3.32 8.70 -74.06 -0.64 -3.96 16 40 H -0.30 -1.27 7.11 99.48 0.71 -0.57 16 41 H -0.28 0.14 7.11 99.48 0.71 0.85 16 42 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 43 H 0.13 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.11 -1.40 7.48 -2.39 -0.02 -1.42 16 45 H 0.11 -1.82 8.10 -2.38 -0.02 -1.84 16 Total: 0.00 -41.11 388.05 -3.71 -44.83 By element: Atomic # 1 Polarization: -32.13 SS G_CDS: -0.36 Total: -32.49 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.34 Total: 19.12 kcal Atomic # 7 Polarization: 6.25 SS G_CDS: -2.57 Total: 3.68 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -6.86 Total: -26.37 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.04 Total: -1.26 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -0.30 Total: -7.51 kcal Total: -41.11 -3.71 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.008 kcal (2) G-P(sol) polarization free energy of solvation -41.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds