Wall clock time and date at job start Sun Mar 7 2021 12:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 H 1.09005 * 112.84936 * 311.20071 * 5 2 1 7 7 C 1.53778 * 113.61294 * 82.50268 * 5 2 1 8 8 C 1.53777 * 87.08118 * 139.98225 * 7 5 2 9 9 H 1.08996 * 113.61754 * 220.01853 * 8 7 5 10 10 C 1.53003 * 113.69251 * 89.12584 * 8 7 5 11 11 N 1.46504 * 109.47021 * 87.46420 * 10 8 7 12 12 C 1.34775 * 119.99760 * 180.02562 * 11 10 8 13 13 O 1.21280 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47102 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.46990 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47420 * 180.02562 * 16 15 14 18 18 C 1.35898 * 117.00723 * 180.02562 * 17 16 15 19 19 C 1.38705 * 120.06084 * 180.02562 * 18 17 16 20 20 C 1.38164 * 119.94778 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.97553 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.46985 * 64.99931 * 21 20 19 23 23 Si 1.86293 * 109.47017 * 184.99863 * 21 20 19 24 24 C 1.38245 * 120.05456 * 359.97438 * 20 19 18 25 25 C 1.38289 * 120.10952 * 0.02562 * 24 20 19 26 26 C 1.38127 * 120.05852 * 359.67973 * 25 24 20 27 27 C 1.53776 * 113.61604 * 180.02562 * 5 2 1 28 28 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 29 29 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 30 30 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 31 31 H 1.09003 * 113.61274 * 254.53117 * 7 5 2 32 32 H 1.08999 * 113.61873 * 25.43062 * 7 5 2 33 33 H 1.08995 * 109.47424 * 207.47057 * 10 8 7 34 34 H 1.09007 * 109.47227 * 327.46836 * 10 8 7 35 35 H 0.96997 * 120.00169 * 0.02562 * 11 10 8 36 36 H 1.08998 * 109.46514 * 299.99605 * 14 12 11 37 37 H 1.08998 * 109.47043 * 59.99663 * 14 12 11 38 38 H 1.09004 * 109.47109 * 299.99739 * 15 14 12 39 39 H 1.09000 * 109.47160 * 59.99486 * 15 14 12 40 40 H 1.08997 * 109.47298 * 299.99664 * 16 15 14 41 41 H 1.09000 * 109.47592 * 59.99746 * 16 15 14 42 42 H 1.08009 * 120.02625 * 359.97438 * 19 18 17 43 43 H 1.09001 * 109.46991 * 304.99907 * 21 20 19 44 44 H 0.96699 * 114.00270 * 59.99939 * 22 21 20 45 45 H 1.48505 * 109.99991 * 180.02562 * 23 21 20 46 46 H 1.48501 * 110.00358 * 301.31545 * 23 21 20 47 47 H 1.07997 * 119.94572 * 180.02562 * 24 20 19 48 48 H 1.07997 * 119.97189 * 179.97438 * 25 24 20 49 49 H 1.08001 * 120.02909 * 180.32068 * 26 25 24 50 50 H 1.09000 * 113.61311 * 334.56715 * 27 5 2 51 51 H 1.08994 * 113.61561 * 105.46830 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 1 1.6289 -1.6518 -1.8032 7 6 2.1362 0.2701 -2.7773 8 6 3.3796 -0.4369 -3.3419 9 1 4.1159 0.2462 -3.7653 10 6 3.0525 -1.6079 -4.2708 11 7 2.8856 -1.1133 -5.6397 12 6 2.5906 -1.9726 -6.6352 13 8 2.4637 -3.1551 -6.3980 14 6 2.4194 -1.4640 -8.0435 15 6 2.0922 -2.6348 -8.9724 16 6 1.9191 -2.1186 -10.4021 17 8 1.6128 -3.2120 -11.2697 18 6 1.4275 -2.9233 -12.5846 19 6 1.1269 -3.9367 -13.4828 20 6 0.9395 -3.6406 -14.8193 21 6 0.6123 -4.7410 -15.7956 22 8 -0.6646 -5.2973 -15.4759 23 14 0.5720 -4.0463 -17.5237 24 6 1.0509 -2.3356 -15.2616 25 6 1.3506 -1.3235 -14.3681 26 6 1.5328 -1.6134 -13.0300 27 6 3.6947 -0.8655 -1.8985 28 1 -0.3633 0.5970 -0.8365 29 1 -0.3633 0.4260 0.9352 30 1 -0.3634 -1.0230 -0.0987 31 1 1.2515 0.1655 -3.4055 32 1 2.3204 1.3001 -2.4721 33 1 3.8663 -2.3323 -4.2428 34 1 2.1294 -2.0856 -3.9420 35 1 2.9874 -0.1676 -5.8295 36 1 1.6059 -0.7391 -8.0716 37 1 3.3427 -0.9869 -8.3723 38 1 2.9060 -3.3595 -8.9442 39 1 1.1690 -3.1123 -8.6437 40 1 1.1055 -1.3938 -10.4308 41 1 2.8424 -1.6414 -10.7305 42 1 1.0402 -4.9565 -13.1378 43 1 1.3732 -5.5191 -15.7344 44 1 -1.3911 -4.6600 -15.5103 45 1 0.2497 -5.1215 -18.4960 46 1 -0.4394 -2.9626 -17.6120 47 1 0.9037 -2.1061 -16.3066 48 1 1.4375 -0.3048 -14.7161 49 1 1.7617 -0.8218 -12.3318 50 1 4.3052 -0.1460 -1.3529 51 1 4.0678 -1.8863 -1.8175 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:25:47 Heat of formation + Delta-G solvation = -123.603739 kcal Electronic energy + Delta-G solvation = -31373.389943 eV Core-core repulsion = 26754.104325 eV Total energy + Delta-G solvation = -4619.285618 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.153 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.36035 -41.16360 -40.14570 -39.20067 -38.02379 -37.38199 -37.07035 -35.61421 -34.97807 -32.49019 -31.34688 -30.76700 -29.93007 -28.05572 -27.16094 -26.81787 -25.37127 -23.75764 -23.35155 -21.91116 -21.60494 -20.57457 -19.84285 -19.21322 -18.63080 -18.16829 -17.87725 -17.58990 -17.29833 -17.21713 -17.03669 -16.99044 -16.85922 -16.59068 -16.15358 -16.03809 -15.48904 -15.42830 -15.06764 -14.82322 -14.57998 -14.41098 -14.29237 -14.24566 -14.09821 -14.06355 -13.92521 -13.64295 -13.42814 -13.26870 -13.19007 -13.07596 -13.05739 -12.88102 -12.78507 -12.44093 -12.30944 -12.12116 -11.94430 -11.90445 -11.88601 -11.71332 -11.54603 -11.24799 -10.94391 -10.63106 -10.24677 -9.94600 -9.24049 -4.95872 -1.10344 0.20488 0.41278 1.26513 1.52783 1.59406 1.60278 1.78525 1.95745 2.25328 2.42023 2.66529 2.66635 2.99798 3.16381 3.22636 3.31556 3.37976 3.50133 3.62296 3.71498 3.72170 3.76537 3.79472 3.84352 3.93562 3.99162 4.08540 4.09434 4.12734 4.18962 4.21383 4.27391 4.29798 4.34118 4.39834 4.51661 4.53795 4.54532 4.57535 4.61733 4.66279 4.69033 4.89632 4.93400 4.96810 5.09202 5.24748 5.27733 5.36518 5.43867 5.69191 6.30160 6.39935 6.40304 7.08689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.609 4.609 6 H 0.153 0.847 7 C -0.112 4.112 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.134 3.866 11 N -0.732 5.732 12 C 0.514 3.486 13 O -0.534 6.534 14 C -0.137 4.137 15 C -0.106 4.106 16 C 0.060 3.940 17 O -0.311 6.311 18 C 0.132 3.868 19 C -0.126 4.126 20 C -0.078 4.078 21 C -0.077 4.077 22 O -0.528 6.528 23 Si 0.691 3.309 24 C -0.157 4.157 25 C -0.074 4.074 26 C -0.205 4.205 27 C -0.097 4.097 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.403 0.597 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.376 0.624 45 H -0.257 1.257 46 H -0.260 1.260 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.101 0.899 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 6.380 -3.121 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.171 0.829 7 C -0.150 4.150 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.011 3.989 11 N -0.385 5.385 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.177 4.177 15 C -0.144 4.144 16 C -0.016 4.016 17 O -0.225 6.225 18 C 0.086 3.914 19 C -0.144 4.144 20 C -0.079 4.079 21 C -0.187 4.187 22 O -0.334 6.334 23 Si 0.592 3.408 24 C -0.175 4.175 25 C -0.092 4.092 26 C -0.223 4.223 27 C -0.136 4.136 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.224 0.776 45 H -0.182 1.182 46 H -0.185 1.185 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.119 0.881 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.719 5.211 -2.802 5.960 hybrid contribution -1.664 0.473 0.118 1.734 sum -0.945 5.684 -2.683 6.356 Atomic orbital electron populations 1.30240 1.26630 1.11670 1.11906 1.07838 0.78499 0.75883 0.77334 1.93609 1.79209 1.34156 1.86303 1.93618 1.79078 1.66975 1.53780 1.31775 1.07735 1.12077 1.20227 0.82886 1.22844 0.99850 0.97777 0.94533 1.22468 0.98455 0.97514 0.94972 0.88494 1.21170 1.02400 0.95254 0.80114 1.45982 1.73034 1.11483 1.08012 1.20589 0.76101 0.86355 0.86967 1.90766 1.49561 1.16405 1.84217 1.21526 1.04568 0.99788 0.91865 1.21231 1.04940 0.97652 0.90528 1.22818 1.00490 0.88635 0.89609 1.86085 1.84971 1.35955 1.15492 1.19021 0.95629 0.93300 0.83400 1.20284 1.03757 0.99050 0.91337 1.20074 0.98981 0.94661 0.94172 1.25095 0.87848 0.98985 1.06748 1.86619 1.16244 1.39412 1.91131 0.94864 0.90864 0.79871 0.75153 1.20973 1.04354 0.92430 0.99768 1.20910 0.96602 0.99360 0.92307 1.21318 1.08098 0.95430 0.97494 1.22597 0.90465 1.04524 0.96003 0.85268 0.85168 0.85294 0.89352 0.87170 0.90598 0.90938 0.76276 0.88348 0.88271 0.89752 0.89829 0.91821 0.91696 0.84826 0.86226 0.77632 1.18223 1.18536 0.85395 0.85239 0.85269 0.88094 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.77 10.62 101.05 1.07 3.84 16 2 S 2.42 -3.79 5.34 -107.50 -0.57 -4.36 16 3 O -0.94 -1.68 17.19 -57.83 -0.99 -2.68 16 4 O -0.94 -2.74 18.10 -57.83 -1.05 -3.78 16 5 C -0.61 2.40 3.82 -25.92 -0.10 2.30 16 6 H 0.15 -0.88 7.72 -51.93 -0.40 -1.28 16 7 C -0.11 0.52 7.16 -25.92 -0.19 0.33 16 8 C -0.11 0.48 3.94 -89.79 -0.35 0.13 16 9 H 0.10 -0.50 8.14 -51.93 -0.42 -0.92 16 10 C 0.13 -0.36 5.35 -4.04 -0.02 -0.38 16 11 N -0.73 2.35 5.56 -60.29 -0.33 2.02 16 12 C 0.51 -0.30 7.83 -10.98 -0.09 -0.39 16 13 O -0.53 -2.25 15.98 5.56 0.09 -2.16 16 14 C -0.14 0.50 5.70 -27.88 -0.16 0.34 16 15 C -0.11 0.11 4.87 -26.74 -0.13 -0.02 16 16 C 0.06 -0.09 4.74 37.15 0.18 0.09 16 17 O -0.31 -0.62 10.14 -19.42 -0.20 -0.82 16 18 C 0.13 0.23 6.69 -39.22 -0.26 -0.03 16 19 C -0.13 -0.25 9.62 -39.44 -0.38 -0.63 16 20 C -0.08 -0.06 5.35 -104.64 -0.56 -0.62 16 21 C -0.08 -0.01 2.80 36.01 0.10 0.09 16 22 O -0.53 -0.91 12.83 -35.23 -0.45 -1.37 16 23 Si 0.69 -0.64 29.88 -169.99 -5.08 -5.72 16 24 C -0.16 0.04 8.67 -39.56 -0.34 -0.30 16 25 C -0.07 0.05 10.04 -39.60 -0.40 -0.35 16 26 C -0.20 0.01 9.04 -39.43 -0.36 -0.35 16 27 C -0.10 0.31 7.26 -25.90 -0.19 0.13 16 28 H 0.13 -0.77 8.14 -51.92 -0.42 -1.20 16 29 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 30 H 0.13 -0.73 8.14 -51.92 -0.42 -1.15 16 31 H 0.09 -0.51 8.10 -51.93 -0.42 -0.93 16 32 H 0.11 -0.50 7.36 -51.93 -0.38 -0.88 16 33 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 34 H 0.07 -0.14 7.40 -51.93 -0.38 -0.53 16 35 H 0.40 -2.45 8.47 -40.82 -0.35 -2.79 16 36 H 0.10 -0.56 8.14 -51.93 -0.42 -0.98 16 37 H 0.10 -0.55 8.14 -51.93 -0.42 -0.97 16 38 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 39 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 40 H 0.06 -0.18 7.65 -51.93 -0.40 -0.58 16 41 H 0.06 -0.19 7.67 -51.93 -0.40 -0.59 16 42 H 0.13 0.31 8.06 -52.48 -0.42 -0.12 16 43 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 44 H 0.38 -0.44 8.70 45.56 0.40 -0.04 16 45 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 46 H -0.26 -0.22 7.01 56.52 0.40 0.18 16 47 H 0.13 -0.24 4.83 -52.49 -0.25 -0.50 16 48 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 49 H 0.13 -0.29 6.30 -52.49 -0.33 -0.62 16 50 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 51 H 0.09 -0.33 8.10 -51.93 -0.42 -0.75 16 LS Contribution 430.31 15.07 6.48 6.48 Total: 0.00 -14.99 430.31 -12.30 -27.29 By element: Atomic # 1 Polarization: -11.07 SS G_CDS: -8.02 Total: -19.09 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.17 Total: 4.18 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -0.33 Total: 2.02 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -2.60 Total: -10.80 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.08 Total: -5.72 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -0.57 Total: -4.36 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -14.99 -12.30 -27.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.316 kcal (2) G-P(sol) polarization free energy of solvation -14.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds