Wall clock time and date at job start Sun Mar 7 2021 12:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 H 1.09005 * 112.84936 * 311.20071 * 5 2 1 7 7 C 1.53778 * 113.61294 * 82.50268 * 5 2 1 8 8 C 1.53777 * 87.08118 * 139.98225 * 7 5 2 9 9 H 1.08996 * 113.61754 * 220.01853 * 8 7 5 10 10 C 1.53003 * 113.69251 * 89.12584 * 8 7 5 11 11 N 1.46504 * 109.47021 * 87.46420 * 10 8 7 12 12 C 1.34775 * 119.99760 * 180.02562 * 11 10 8 13 13 O 1.21280 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47102 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.46990 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47420 * 180.02562 * 16 15 14 18 18 C 1.35898 * 117.00723 * 180.02562 * 17 16 15 19 19 C 1.38705 * 120.06084 * 180.02562 * 18 17 16 20 20 C 1.38164 * 119.94778 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.97553 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.46985 * 64.99931 * 21 20 19 23 23 Si 1.86293 * 109.47017 * 184.99863 * 21 20 19 24 24 C 1.38245 * 120.05456 * 359.97438 * 20 19 18 25 25 C 1.38289 * 120.10952 * 0.02562 * 24 20 19 26 26 C 1.38127 * 120.05852 * 359.67973 * 25 24 20 27 27 C 1.53776 * 113.61604 * 180.02562 * 5 2 1 28 28 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 29 29 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 30 30 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 31 31 H 1.09003 * 113.61274 * 254.53117 * 7 5 2 32 32 H 1.08999 * 113.61873 * 25.43062 * 7 5 2 33 33 H 1.08995 * 109.47424 * 207.47057 * 10 8 7 34 34 H 1.09007 * 109.47227 * 327.46836 * 10 8 7 35 35 H 0.96997 * 120.00169 * 0.02562 * 11 10 8 36 36 H 1.08998 * 109.46514 * 299.99605 * 14 12 11 37 37 H 1.08998 * 109.47043 * 59.99663 * 14 12 11 38 38 H 1.09004 * 109.47109 * 299.99739 * 15 14 12 39 39 H 1.09000 * 109.47160 * 59.99486 * 15 14 12 40 40 H 1.08997 * 109.47298 * 299.99664 * 16 15 14 41 41 H 1.09000 * 109.47592 * 59.99746 * 16 15 14 42 42 H 1.08009 * 120.02625 * 359.97438 * 19 18 17 43 43 H 1.09001 * 109.46991 * 304.99907 * 21 20 19 44 44 H 0.96699 * 114.00270 * 59.99939 * 22 21 20 45 45 H 1.48505 * 109.99991 * 180.02562 * 23 21 20 46 46 H 1.48501 * 110.00358 * 301.31545 * 23 21 20 47 47 H 1.07997 * 119.94572 * 180.02562 * 24 20 19 48 48 H 1.07997 * 119.97189 * 179.97438 * 25 24 20 49 49 H 1.08001 * 120.02909 * 180.32068 * 26 25 24 50 50 H 1.09000 * 113.61311 * 334.56715 * 27 5 2 51 51 H 1.08994 * 113.61561 * 105.46830 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 1 1.6289 -1.6518 -1.8032 7 6 2.1362 0.2701 -2.7773 8 6 3.3796 -0.4369 -3.3419 9 1 4.1159 0.2462 -3.7653 10 6 3.0525 -1.6079 -4.2708 11 7 2.8856 -1.1133 -5.6397 12 6 2.5906 -1.9726 -6.6352 13 8 2.4637 -3.1551 -6.3980 14 6 2.4194 -1.4640 -8.0435 15 6 2.0922 -2.6348 -8.9724 16 6 1.9191 -2.1186 -10.4021 17 8 1.6128 -3.2120 -11.2697 18 6 1.4275 -2.9233 -12.5846 19 6 1.1269 -3.9367 -13.4828 20 6 0.9395 -3.6406 -14.8193 21 6 0.6123 -4.7410 -15.7956 22 8 -0.6646 -5.2973 -15.4759 23 14 0.5720 -4.0463 -17.5237 24 6 1.0509 -2.3356 -15.2616 25 6 1.3506 -1.3235 -14.3681 26 6 1.5328 -1.6134 -13.0300 27 6 3.6947 -0.8655 -1.8985 28 1 -0.3633 0.5970 -0.8365 29 1 -0.3633 0.4260 0.9352 30 1 -0.3634 -1.0230 -0.0987 31 1 1.2515 0.1655 -3.4055 32 1 2.3204 1.3001 -2.4721 33 1 3.8663 -2.3323 -4.2428 34 1 2.1294 -2.0856 -3.9420 35 1 2.9874 -0.1676 -5.8295 36 1 1.6059 -0.7391 -8.0716 37 1 3.3427 -0.9869 -8.3723 38 1 2.9060 -3.3595 -8.9442 39 1 1.1690 -3.1123 -8.6437 40 1 1.1055 -1.3938 -10.4308 41 1 2.8424 -1.6414 -10.7305 42 1 1.0402 -4.9565 -13.1378 43 1 1.3732 -5.5191 -15.7344 44 1 -1.3911 -4.6600 -15.5103 45 1 0.2497 -5.1215 -18.4960 46 1 -0.4394 -2.9626 -17.6120 47 1 0.9037 -2.1061 -16.3066 48 1 1.4375 -0.3048 -14.7161 49 1 1.7617 -0.8218 -12.3318 50 1 4.3052 -0.1460 -1.3529 51 1 4.0678 -1.8863 -1.8175 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:25:45 Heat of formation + Delta-G solvation = -131.597991 kcal Electronic energy + Delta-G solvation = -31373.736600 eV Core-core repulsion = 26754.104325 eV Total energy + Delta-G solvation = -4619.632275 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.153 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.30654 -41.04113 -39.97217 -39.20034 -38.02837 -37.41631 -37.07466 -35.49296 -34.88077 -32.47194 -31.29942 -30.47992 -29.76591 -27.87040 -26.86100 -26.78273 -25.15703 -23.71185 -23.27352 -21.85947 -21.46576 -20.36762 -19.67545 -19.19280 -18.45049 -18.03270 -17.90934 -17.46975 -17.16977 -17.15362 -16.93953 -16.86599 -16.80921 -16.50843 -16.16991 -15.82543 -15.50106 -15.26249 -14.97554 -14.74329 -14.45880 -14.22277 -14.13140 -14.10667 -13.97036 -13.92349 -13.62742 -13.43474 -13.29943 -13.21566 -13.10967 -13.07817 -13.05043 -12.73853 -12.71677 -12.29738 -12.27931 -11.99144 -11.90777 -11.63760 -11.59861 -11.58282 -11.53856 -11.10398 -10.84448 -10.65841 -10.11456 -9.92959 -9.23599 -4.90744 -0.93797 0.22487 0.42081 1.29504 1.61258 1.62724 1.81115 1.91153 1.99574 2.38671 2.62130 2.68453 2.88803 3.26614 3.40479 3.40884 3.48504 3.61236 3.65246 3.71165 3.86265 3.89769 3.99824 4.05978 4.12414 4.14126 4.21903 4.25123 4.26216 4.36584 4.38097 4.44089 4.45953 4.55650 4.57773 4.60664 4.66083 4.70030 4.75774 4.89536 4.91732 4.93978 4.96082 4.99947 5.02834 5.17236 5.23707 5.30054 5.39806 5.45282 5.46596 5.75917 6.44388 6.46256 6.54738 7.26047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.416 3.584 3 O -0.978 6.978 4 O -0.994 6.994 5 C -0.593 4.593 6 H 0.174 0.826 7 C -0.108 4.108 8 C -0.103 4.103 9 H 0.111 0.889 10 C 0.133 3.867 11 N -0.716 5.716 12 C 0.507 3.493 13 O -0.592 6.592 14 C -0.127 4.127 15 C -0.102 4.102 16 C 0.057 3.943 17 O -0.339 6.339 18 C 0.116 3.884 19 C -0.152 4.152 20 C -0.082 4.082 21 C -0.093 4.093 22 O -0.551 6.551 23 Si 0.782 3.218 24 C -0.162 4.162 25 C -0.073 4.073 26 C -0.204 4.204 27 C -0.115 4.115 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.420 0.580 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.386 0.614 45 H -0.305 1.305 46 H -0.276 1.276 47 H 0.146 0.854 48 H 0.159 0.841 49 H 0.154 0.846 50 H 0.097 0.903 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 9.170 -4.657 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.605 3.395 3 O -0.975 6.975 4 O -0.991 6.991 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.146 4.146 8 C -0.123 4.123 9 H 0.129 0.871 10 C 0.009 3.991 11 N -0.369 5.369 12 C 0.295 3.705 13 O -0.472 6.472 14 C -0.166 4.166 15 C -0.141 4.141 16 C -0.017 4.017 17 O -0.254 6.254 18 C 0.071 3.929 19 C -0.171 4.171 20 C -0.082 4.082 21 C -0.200 4.200 22 O -0.359 6.359 23 Si 0.687 3.313 24 C -0.179 4.179 25 C -0.091 4.091 26 C -0.223 4.223 27 C -0.153 4.153 28 H 0.173 0.827 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.258 0.742 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.235 0.765 45 H -0.233 1.233 46 H -0.203 1.203 47 H 0.163 0.837 48 H 0.176 0.824 49 H 0.172 0.828 50 H 0.116 0.884 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.233 8.073 -4.274 9.137 hybrid contribution -1.538 -0.451 0.586 1.706 sum -1.305 7.621 -3.688 8.567 Atomic orbital electron populations 1.30110 1.22702 1.13587 1.13120 1.07620 0.79795 0.74494 0.77604 1.93548 1.80860 1.35951 1.87143 1.93545 1.81021 1.67800 1.56771 1.31680 1.07571 1.13083 1.18118 0.80804 1.22921 1.00358 0.97431 0.93872 1.22348 0.99095 0.97022 0.93849 0.87084 1.21123 1.01576 0.95634 0.80734 1.45869 1.71554 1.12154 1.07347 1.21176 0.75112 0.85745 0.88435 1.90748 1.52379 1.18940 1.85173 1.21533 1.07096 0.98993 0.89021 1.21158 1.02768 0.98332 0.91811 1.23004 1.02132 0.88120 0.88433 1.86054 1.85285 1.37994 1.16059 1.19199 0.96275 0.94143 0.83285 1.20337 1.05617 0.98674 0.92446 1.20117 0.99105 0.95384 0.93615 1.25427 0.87319 0.99247 1.08047 1.86580 1.17211 1.40589 1.91489 0.93849 0.89107 0.76899 0.71461 1.21220 1.03895 0.91953 1.00859 1.21305 0.95239 1.00576 0.91936 1.21611 1.07285 0.95031 0.98365 1.22746 0.91022 1.04546 0.97035 0.82746 0.85161 0.83348 0.87338 0.87048 0.92256 0.91475 0.74221 0.85256 0.85407 0.92292 0.92261 0.89857 0.89727 0.86657 0.86272 0.76467 1.23320 1.20262 0.83664 0.82377 0.82806 0.88443 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.16 10.62 113.37 1.20 7.37 16 2 S 2.42 -5.51 5.34 -56.49 -0.30 -5.81 16 3 O -0.98 -4.79 17.19 -127.37 -2.19 -6.98 16 4 O -0.99 -7.93 18.10 -127.37 -2.31 -10.24 16 5 C -0.59 4.89 3.82 31.12 0.12 5.01 16 6 H 0.17 -2.17 7.72 -2.38 -0.02 -2.19 16 7 C -0.11 1.17 7.16 31.12 0.22 1.39 16 8 C -0.10 0.97 3.94 -10.26 -0.04 0.93 16 9 H 0.11 -1.32 8.14 -2.39 -0.02 -1.34 16 10 C 0.13 -0.76 5.35 86.38 0.46 -0.30 16 11 N -0.72 5.51 5.56 -463.04 -2.57 2.94 16 12 C 0.51 -0.76 7.83 87.66 0.69 -0.07 16 13 O -0.59 -5.92 15.98 -3.03 -0.05 -5.97 16 14 C -0.13 1.13 5.70 29.85 0.17 1.30 16 15 C -0.10 0.16 4.87 30.59 0.15 0.31 16 16 C 0.06 -0.22 4.74 71.98 0.34 0.12 16 17 O -0.34 -1.70 10.14 -92.41 -0.94 -2.64 16 18 C 0.12 0.46 6.69 22.51 0.15 0.61 16 19 C -0.15 -0.86 9.62 22.36 0.22 -0.64 16 20 C -0.08 -0.16 5.35 -19.88 -0.11 -0.26 16 21 C -0.09 -0.11 2.80 71.24 0.20 0.09 16 22 O -0.55 -2.66 12.83 -148.98 -1.91 -4.57 16 23 Si 0.78 -1.59 29.88 68.60 2.05 0.46 16 24 C -0.16 0.28 8.67 22.28 0.19 0.48 16 25 C -0.07 0.25 10.04 22.26 0.22 0.47 16 26 C -0.20 0.35 9.04 22.37 0.20 0.55 16 27 C -0.11 0.69 7.26 31.13 0.23 0.92 16 28 H 0.15 -2.23 8.14 -2.39 -0.02 -2.25 16 29 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 30 H 0.15 -1.95 8.14 -2.39 -0.02 -1.97 16 31 H 0.11 -1.56 8.10 -2.39 -0.02 -1.58 16 32 H 0.11 -1.15 7.36 -2.39 -0.02 -1.17 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.07 -0.29 7.40 -2.38 -0.02 -0.30 16 35 H 0.42 -6.18 8.47 -92.71 -0.79 -6.97 16 36 H 0.13 -1.90 8.14 -2.39 -0.02 -1.92 16 37 H 0.13 -1.82 8.14 -2.39 -0.02 -1.83 16 38 H 0.06 0.19 8.10 -2.38 -0.02 0.17 16 39 H 0.06 0.18 8.10 -2.39 -0.02 0.16 16 40 H 0.08 -0.65 7.65 -2.39 -0.02 -0.67 16 41 H 0.08 -0.66 7.67 -2.39 -0.02 -0.68 16 42 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 44 H 0.39 -0.49 8.70 -74.06 -0.64 -1.13 16 45 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 46 H -0.28 -0.17 7.01 99.48 0.70 0.53 16 47 H 0.15 -0.84 4.83 -2.91 -0.01 -0.85 16 48 H 0.16 -1.48 8.06 -2.91 -0.02 -1.50 16 49 H 0.15 -1.14 6.30 -2.91 -0.02 -1.16 16 50 H 0.10 -0.51 8.10 -2.39 -0.02 -0.53 16 51 H 0.09 -0.54 8.10 -2.39 -0.02 -0.56 16 Total: 0.00 -39.66 430.31 -4.04 -43.71 By element: Atomic # 1 Polarization: -28.72 SS G_CDS: -0.45 Total: -29.17 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 4.62 Total: 18.28 kcal Atomic # 7 Polarization: 5.51 SS G_CDS: -2.57 Total: 2.94 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -7.39 Total: -30.40 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: 2.05 Total: 0.46 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -0.30 Total: -5.81 kcal Total: -39.66 -4.04 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.891 kcal (2) G-P(sol) polarization free energy of solvation -39.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds