Wall clock time and date at job start Sun Mar 7 2021 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00132 * 2 1 4 4 C 1.39151 * 120.07598 * 180.02562 * 3 2 1 5 5 O 1.36004 * 120.07160 * 359.95997 * 4 3 2 6 6 C 1.42900 * 116.99973 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47064 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.84890 * 316.19493 * 11 10 9 13 13 C 1.53787 * 113.61418 * 87.49925 * 11 10 9 14 14 C 1.53784 * 87.07648 * 89.11807 * 13 11 10 15 15 H 1.08992 * 113.69150 * 270.86683 * 14 13 11 16 16 S 1.81407 * 113.61151 * 139.97992 * 14 13 11 17 17 C 1.81408 * 101.91908 * 82.50124 * 16 14 13 18 18 O 1.42096 * 108.57838 * 196.98503 * 16 14 13 19 19 O 1.42098 * 108.57972 * 328.01629 * 16 14 13 20 20 C 1.53780 * 113.61900 * 184.99939 * 11 10 9 21 21 C 1.38563 * 119.85494 * 180.23262 * 4 3 2 22 22 C 1.38240 * 119.99955 * 359.47395 * 21 4 3 23 23 N 1.48005 * 119.92624 * 180.27429 * 22 21 4 24 24 O 1.21792 * 120.00105 * 0.27539 * 23 22 21 25 25 O 1.21805 * 119.99343 * 180.27729 * 23 22 21 26 26 C 1.38254 * 120.14666 * 0.55106 * 22 21 4 27 27 C 1.50688 * 119.92988 * 179.72506 * 26 22 21 28 28 O 1.42895 * 109.47202 * 74.97575 * 27 26 22 29 29 Si 1.86296 * 109.47366 * 194.97791 * 27 26 22 30 30 C 1.38250 * 120.14258 * 359.70105 * 26 22 21 31 31 H 1.09007 * 109.46757 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47032 * 299.99365 * 1 2 3 33 33 H 1.08990 * 109.47178 * 59.99803 * 1 2 3 34 34 H 1.09001 * 109.47130 * 59.99655 * 6 5 4 35 35 H 1.09002 * 109.47002 * 299.99755 * 6 5 4 36 36 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 38 38 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 39 39 H 1.08998 * 113.61239 * 203.66675 * 13 11 10 40 40 H 1.08994 * 113.61233 * 334.57222 * 13 11 10 41 41 H 1.09002 * 109.46915 * 59.99998 * 17 16 14 42 42 H 1.09001 * 109.46699 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.47226 * 300.00053 * 17 16 14 44 44 H 1.09002 * 113.60839 * 25.43161 * 20 11 10 45 45 H 1.08997 * 113.62198 * 156.33399 * 20 11 10 46 46 H 1.08003 * 119.99830 * 179.72178 * 21 4 3 47 47 H 1.09005 * 109.46941 * 314.97599 * 27 26 22 48 48 H 0.96706 * 114.00028 * 180.02562 * 28 27 26 49 49 H 1.48503 * 110.00119 * 299.99785 * 29 27 26 50 50 H 1.48505 * 110.00413 * 61.31586 * 29 27 26 51 51 H 1.07994 * 119.99672 * 179.97438 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1796 0.1476 -0.0002 6 6 5.6004 0.3006 -0.0003 7 6 6.2519 -1.0583 0.0007 8 8 5.5670 -2.0591 0.0018 9 7 7.5957 -1.1612 0.0014 10 6 8.2291 -2.4822 0.0029 11 6 9.7503 -2.3184 0.0028 12 1 10.0935 -1.5531 -0.6934 13 6 10.3562 -2.1897 1.4104 14 6 10.4679 -3.7235 1.4168 15 1 9.5812 -4.2256 1.8035 16 16 12.0050 -4.3369 2.1597 17 6 11.6082 -4.2961 3.9294 18 8 12.1884 -5.6905 1.7681 19 8 13.0381 -3.3949 1.9056 20 6 10.5131 -3.6482 -0.1185 21 6 4.0603 2.5234 0.0043 22 6 3.3029 3.6798 -0.0013 23 7 3.9715 5.0003 -0.0022 24 8 5.1876 5.0671 -0.0031 25 8 3.3054 6.0201 -0.0020 26 6 1.9224 3.6058 -0.0002 27 6 1.1016 4.8695 -0.0001 28 8 1.1342 5.4588 -1.3015 29 14 -0.6593 4.4664 0.4553 30 6 1.2932 2.3747 0.0002 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 5.9066 0.8507 0.8896 35 1 5.9066 0.8502 -0.8904 36 1 8.1435 -0.3607 0.0009 37 1 7.9225 -3.0311 0.8933 38 1 7.9233 -3.0329 -0.8867 39 1 11.3203 -1.6816 1.4259 40 1 9.6589 -1.7997 2.1518 41 1 10.7515 -4.9412 4.1246 42 1 12.4663 -4.6475 4.5023 43 1 11.3684 -3.2745 4.2245 44 1 9.9425 -4.4354 -0.6112 45 1 11.5202 -3.5388 -0.5208 46 1 5.1386 2.5840 0.0085 47 1 1.5135 5.5701 0.7264 48 1 0.6260 6.2782 -1.3751 49 1 -1.2323 3.5120 -0.5276 50 1 -0.7102 3.8822 1.8196 51 1 0.2147 2.3196 0.0014 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:26:14 Heat of formation + Delta-G solvation = -136.658900 kcal Electronic energy + Delta-G solvation = -39772.453661 eV Core-core repulsion = 34158.440920 eV Total energy + Delta-G solvation = -5614.012741 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.131 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.45811 -42.22154 -41.23211 -40.28880 -39.56924 -39.12100 -38.03179 -37.79809 -37.13724 -37.07755 -35.63123 -32.87305 -32.71012 -30.86137 -30.40159 -29.12172 -28.40601 -27.96141 -26.85342 -25.89278 -25.10544 -23.95165 -23.16642 -21.89569 -20.81255 -20.54706 -19.92795 -19.67788 -19.58300 -18.89345 -18.60291 -18.50234 -18.26307 -18.07753 -17.84536 -17.67349 -17.16771 -17.02966 -16.92350 -16.79217 -16.55783 -16.06996 -15.99984 -15.80574 -15.47484 -15.11176 -14.86604 -14.72711 -14.34563 -14.16127 -14.12677 -14.01987 -13.95944 -13.89259 -13.63523 -13.58204 -13.26501 -13.23918 -13.08562 -13.01883 -12.77502 -12.71500 -12.67575 -12.51154 -12.44617 -12.39520 -12.21510 -11.99704 -11.92242 -11.65438 -11.60491 -11.21938 -10.91483 -10.63303 -10.26692 -10.24159 -9.61589 -5.01078 -1.40063 -0.94070 -0.57335 0.10948 0.23195 1.14649 1.16190 1.35234 1.56786 1.70314 1.77097 1.79997 1.81108 2.26197 2.61720 2.81783 2.88128 3.03512 3.19536 3.25355 3.33026 3.37688 3.40837 3.57721 3.59969 3.72466 3.78053 3.80778 3.91002 3.93474 3.99067 4.05378 4.06824 4.10603 4.12561 4.22461 4.22998 4.36234 4.49977 4.56626 4.57295 4.59343 4.60478 4.70568 4.85322 4.90900 4.92601 4.95127 5.17545 5.23017 5.30374 5.44479 5.89038 6.35204 6.50058 6.83664 7.03514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.304 6.304 3 C 0.163 3.837 4 C 0.104 3.896 5 O -0.290 6.290 6 C 0.024 3.976 7 C 0.517 3.483 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.135 3.865 11 C -0.104 4.104 12 H 0.113 0.887 13 C -0.109 4.109 14 C -0.594 4.594 15 H 0.176 0.824 16 S 2.416 3.584 17 C -0.643 4.643 18 O -0.994 6.994 19 O -0.978 6.978 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.043 4.043 23 N 0.037 4.963 24 O -0.190 6.190 25 O -0.142 6.142 26 C -0.005 4.005 27 C -0.100 4.100 28 O -0.553 6.553 29 Si 0.777 3.223 30 C -0.187 4.187 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.192 0.808 47 H 0.101 0.899 48 H 0.408 0.592 49 H -0.269 1.269 50 H -0.277 1.277 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 4.293 3.326 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.114 3.886 4 C 0.057 3.943 5 O -0.203 6.203 6 C -0.054 4.054 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.361 5.361 10 C 0.012 3.988 11 C -0.124 4.124 12 H 0.131 0.869 13 C -0.147 4.147 14 C -0.705 4.705 15 H 0.194 0.806 16 S 2.605 3.395 17 C -0.795 4.795 18 O -0.991 6.991 19 O -0.976 6.976 20 C -0.152 4.152 21 C -0.126 4.126 22 C -0.127 4.127 23 N 0.552 4.448 24 O -0.398 6.398 25 O -0.362 6.362 26 C -0.007 4.007 27 C -0.208 4.208 28 O -0.364 6.364 29 Si 0.678 3.322 30 C -0.206 4.206 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.209 0.791 47 H 0.119 0.881 48 H 0.260 0.740 49 H -0.196 1.196 50 H -0.203 1.203 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.724 1.081 3.014 6.559 hybrid contribution 0.464 0.624 0.312 0.838 sum -5.260 1.705 3.327 6.453 Atomic orbital electron populations 1.23667 0.75327 1.07116 1.02836 1.86310 1.24180 1.24605 1.86510 1.18665 0.89643 0.85957 0.94326 1.17859 0.88295 0.85506 1.02631 1.86301 1.18810 1.26523 1.88659 1.22985 0.78438 0.96413 1.07540 1.20234 0.83102 0.90253 0.76194 1.90794 1.64048 1.39816 1.50006 1.45621 1.04993 1.10807 1.74634 1.21208 0.90848 0.83996 1.02738 1.22348 0.92465 0.98769 0.98837 0.86910 1.22941 1.04193 0.89160 0.98423 1.31692 1.21177 1.09090 1.08535 0.80623 1.07613 0.78115 0.73857 0.79906 1.30113 1.13561 1.13805 1.22063 1.93544 1.86196 1.36778 1.82590 1.93550 1.54368 1.64523 1.85118 1.22730 1.02624 0.99260 0.90572 1.20978 1.03272 0.87881 1.00431 1.20540 0.92357 0.82797 1.16995 1.43447 1.00862 1.02991 0.97464 1.94519 0.96129 1.93935 1.55187 1.94483 1.64615 1.24854 1.52214 1.19318 0.90929 0.96120 0.94300 1.25219 1.11002 0.93414 0.91190 1.86384 1.77579 1.45366 1.27049 0.93523 0.75792 0.85922 0.76928 1.21045 1.01299 0.89566 1.08718 0.85073 0.90890 0.90985 0.84962 0.85371 0.73859 0.90869 0.91669 0.87060 0.87235 0.83326 0.85212 0.82814 0.88731 0.88440 0.79075 0.88116 0.73966 1.19554 1.20267 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.37 10.28 -79.64 -0.82 -2.19 16 3 C 0.16 0.63 6.70 22.57 0.15 0.79 16 4 C 0.10 0.31 6.70 22.57 0.15 0.46 16 5 O -0.29 -1.21 9.46 -67.18 -0.64 -1.84 16 6 C 0.02 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.52 -0.14 7.91 87.66 0.69 0.56 16 8 O -0.57 -6.49 16.50 16.01 0.26 -6.23 16 9 N -0.71 5.58 5.56 -463.06 -2.57 3.01 16 10 C 0.14 -0.88 5.35 86.38 0.46 -0.42 16 11 C -0.10 1.04 3.94 -10.27 -0.04 1.00 16 12 H 0.11 -1.39 8.14 -2.39 -0.02 -1.41 16 13 C -0.11 1.22 7.16 31.12 0.22 1.44 16 14 C -0.59 5.15 3.82 31.12 0.12 5.27 16 15 H 0.18 -2.33 7.72 -2.39 -0.02 -2.35 16 16 S 2.42 -5.79 5.34 -56.49 -0.30 -6.09 16 17 C -0.64 6.16 10.62 113.37 1.20 7.36 16 18 O -0.99 -7.75 18.10 -127.37 -2.30 -10.06 16 19 O -0.98 -4.89 17.19 -127.37 -2.19 -7.08 16 20 C -0.11 0.74 7.26 31.12 0.23 0.97 16 21 C -0.11 -0.07 8.54 22.35 0.19 0.12 16 22 C -0.04 -0.20 6.85 36.38 0.25 0.04 16 23 N 0.04 0.30 4.45 -46.46 -0.21 0.09 16 24 O -0.19 -1.70 18.44 18.90 0.35 -1.36 16 25 O -0.14 -1.24 14.62 25.10 0.37 -0.88 16 26 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 27 C -0.10 0.06 1.73 71.23 0.12 0.18 16 28 O -0.55 -0.03 11.77 -129.62 -1.53 -1.55 16 29 Si 0.78 -4.38 30.19 68.60 2.07 -2.31 16 30 C -0.19 -0.36 7.65 22.35 0.17 -0.19 16 31 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 32 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 33 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 34 H 0.13 -1.56 7.65 -2.39 -0.02 -1.58 16 35 H 0.13 -1.38 7.67 -2.39 -0.02 -1.40 16 36 H 0.42 -6.41 8.47 -92.71 -0.79 -7.20 16 37 H 0.07 -0.40 7.39 -2.39 -0.02 -0.42 16 38 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.11 -1.15 7.36 -2.39 -0.02 -1.17 16 40 H 0.11 -1.62 8.10 -2.39 -0.02 -1.64 16 41 H 0.15 -1.96 8.14 -2.39 -0.02 -1.98 16 42 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 43 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 44 H 0.09 -0.63 8.10 -2.39 -0.02 -0.65 16 45 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 46 H 0.19 -1.05 5.85 -2.91 -0.02 -1.07 16 47 H 0.10 -0.10 6.07 -2.38 -0.01 -0.12 16 48 H 0.41 -4.06 8.74 -74.05 -0.65 -4.71 16 49 H -0.27 0.58 6.74 99.48 0.67 1.25 16 50 H -0.28 0.36 7.11 99.48 0.71 1.06 16 51 H 0.17 -0.22 3.13 -2.91 -0.01 -0.23 16 Total: 0.00 -44.66 438.83 -2.60 -47.25 By element: Atomic # 1 Polarization: -29.17 SS G_CDS: -0.40 Total: -29.57 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.30 Total: 18.80 kcal Atomic # 7 Polarization: 5.88 SS G_CDS: -2.78 Total: 3.10 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -6.49 Total: -31.19 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.07 Total: -2.31 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -0.30 Total: -6.09 kcal Total: -44.66 -2.60 -47.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.405 kcal (2) G-P(sol) polarization free energy of solvation -44.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds