Wall clock time and date at job start Sun Mar 7 2021 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.58335 * 2 1 4 4 O 1.42107 * 108.57743 * 228.97562 * 2 1 3 5 5 C 1.81398 * 101.92066 * 114.49050 * 2 1 3 6 6 H 1.08999 * 112.85190 * 53.80346 * 5 2 1 7 7 C 1.53782 * 113.61620 * 184.99661 * 5 2 1 8 8 C 1.53783 * 87.08323 * 139.98054 * 7 5 2 9 9 H 1.09006 * 113.61541 * 219.94160 * 8 7 5 10 10 C 1.52997 * 113.61575 * 89.11758 * 8 7 5 11 11 N 1.46497 * 109.46983 * 176.53209 * 10 8 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.46878 * 179.97438 * 14 12 11 16 16 C 1.35904 * 116.99628 * 179.97438 * 15 14 12 17 17 C 1.38709 * 120.05185 * 180.02562 * 16 15 14 18 18 N 1.48000 * 120.03322 * 359.95396 * 17 16 15 19 19 O 1.21798 * 120.00135 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99575 * 0.02562 * 18 17 16 21 21 C 1.38175 * 119.94024 * 179.97438 * 17 16 15 22 22 C 1.38236 * 120.05748 * 0.02562 * 21 17 16 23 23 C 1.50699 * 119.94510 * 180.02562 * 22 21 17 24 24 O 1.42901 * 109.47187 * 300.00031 * 23 22 21 25 25 Si 1.86303 * 109.47185 * 180.02562 * 23 22 21 26 26 C 1.38296 * 120.11152 * 359.97438 * 22 21 17 27 27 C 1.38116 * 120.05137 * 359.73915 * 26 22 21 28 28 C 1.53780 * 87.16924 * 334.52572 * 8 7 5 29 29 H 1.09001 * 109.46864 * 305.51316 * 1 2 3 30 30 H 1.09002 * 109.47497 * 65.50822 * 1 2 3 31 31 H 1.08999 * 109.47550 * 185.50882 * 1 2 3 32 32 H 1.09004 * 113.61081 * 25.43434 * 7 5 2 33 33 H 1.08995 * 113.61719 * 254.52784 * 7 5 2 34 34 H 1.09001 * 109.46832 * 56.53025 * 10 8 7 35 35 H 1.09002 * 109.47153 * 296.53216 * 10 8 7 36 36 H 0.96995 * 120.00423 * 359.97438 * 11 10 8 37 37 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 38 38 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 39 39 H 1.08003 * 119.96765 * 179.97438 * 21 17 16 40 40 H 1.08994 * 109.47223 * 60.00136 * 23 22 21 41 41 H 0.96703 * 114.00348 * 180.02562 * 24 23 22 42 42 H 1.48492 * 109.99859 * 298.67982 * 25 23 22 43 43 H 1.48497 * 109.99897 * 60.00004 * 25 23 22 44 44 H 1.07998 * 119.97055 * 179.97438 * 26 22 21 45 45 H 1.08009 * 120.02260 * 180.27721 * 27 26 22 46 46 H 1.09001 * 113.61077 * 140.02257 * 28 8 7 47 47 H 1.09004 * 113.61776 * 270.91965 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1886 -0.7358 1.6152 6 1 1.6957 -1.6959 1.7676 7 6 3.6893 -0.7538 1.9507 8 6 3.2921 -0.3795 3.3885 9 1 3.9586 0.3492 3.8500 10 6 3.0231 -1.5899 4.2848 11 7 2.7350 -1.1343 5.6470 12 6 2.4665 -2.0326 6.6153 13 8 2.4629 -3.2180 6.3588 14 6 2.1696 -1.5640 8.0165 15 8 1.9184 -2.6946 8.8536 16 6 1.6327 -2.4446 10.1586 17 6 1.3790 -3.4955 11.0277 18 7 1.4181 -4.8904 10.5348 19 8 1.1957 -5.8127 11.2986 20 8 1.6737 -5.1161 9.3655 21 6 1.0893 -3.2387 12.3541 22 6 1.0517 -1.9360 12.8150 23 6 0.7360 -1.6589 14.2623 24 8 -0.5600 -2.1738 14.5742 25 14 0.7619 0.1796 14.5626 26 6 1.3043 -0.8866 11.9504 27 6 1.6002 -1.1383 10.6250 28 6 2.0175 0.2418 2.7934 29 1 -0.3633 0.5970 0.8365 30 1 -0.3634 0.4260 -0.9352 31 1 -0.3634 -1.0229 0.0987 32 1 4.2603 0.0215 1.4397 33 1 4.1438 -1.7408 1.8663 34 1 3.9008 -2.2361 4.2957 35 1 2.1680 -2.1450 3.8989 36 1 2.7383 -0.1864 5.8523 37 1 3.0242 -1.0083 8.4025 38 1 1.2914 -0.9184 8.0053 39 1 0.8913 -4.0565 13.0312 40 1 1.4806 -2.1413 14.8954 41 1 -0.8300 -2.0303 15.4916 42 1 2.1132 0.7226 14.2722 43 1 -0.2493 0.8485 13.7053 44 1 1.2739 0.1303 12.3128 45 1 1.8018 -0.3186 9.9512 46 1 1.1231 0.0579 3.3887 47 1 2.1321 1.2887 2.5123 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:26:22 Heat of formation + Delta-G solvation = -97.660257 kcal Electronic energy + Delta-G solvation = -34866.093277 eV Core-core repulsion = 29727.991455 eV Total energy + Delta-G solvation = -5138.101822 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.116 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -43.06166 -41.83342 -41.15347 -40.26028 -39.34645 -38.03074 -37.61090 -37.16431 -37.08126 -35.68985 -33.61330 -32.54134 -31.09385 -30.69650 -28.77266 -27.64259 -27.19249 -26.71565 -25.43671 -24.05442 -22.74861 -21.94107 -20.75018 -20.44298 -19.89378 -19.51965 -19.17500 -18.74603 -18.64119 -18.42931 -18.33403 -17.76190 -17.55681 -17.30006 -17.06347 -16.96178 -16.64759 -16.20000 -16.11624 -16.10242 -15.52854 -15.29110 -15.01841 -14.63089 -14.50588 -14.43312 -14.31293 -14.23782 -14.00176 -13.95438 -13.89247 -13.52012 -13.22992 -13.08631 -13.07534 -12.97691 -12.87476 -12.56433 -12.24469 -12.23359 -12.13508 -11.98775 -11.92588 -11.84304 -11.76759 -11.27918 -11.03792 -10.97842 -10.67966 -10.37983 -9.92471 -5.25742 -1.17902 -1.11569 -0.42183 0.33873 0.48844 0.95493 1.00337 1.31367 1.34623 1.59004 1.62422 1.87429 2.08039 2.39641 2.64854 2.84202 2.95388 2.97397 3.03870 3.12138 3.17488 3.26223 3.33761 3.42068 3.48532 3.48960 3.54302 3.70247 3.70692 3.76477 3.91419 4.01667 4.06503 4.10030 4.23525 4.24066 4.25105 4.35454 4.45968 4.50503 4.55574 4.56477 4.63654 4.64739 4.87021 4.88316 5.08621 5.37865 5.65714 6.11650 6.35137 6.90910 6.91445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.610 4.610 6 H 0.154 0.846 7 C -0.097 4.097 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.137 3.863 11 N -0.727 5.727 12 C 0.514 3.486 13 O -0.494 6.494 14 C 0.030 3.970 15 O -0.253 6.253 16 C 0.199 3.801 17 C -0.074 4.074 18 N 0.029 4.971 19 O -0.174 6.174 20 O -0.118 6.118 21 C 0.013 3.987 22 C -0.111 4.111 23 C -0.071 4.071 24 O -0.545 6.545 25 Si 0.691 3.309 26 C -0.032 4.032 27 C -0.207 4.207 28 C -0.113 4.113 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.403 0.597 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.167 0.833 40 H 0.083 0.917 41 H 0.388 0.612 42 H -0.251 1.251 43 H -0.247 1.247 44 H 0.140 0.860 45 H 0.156 0.844 46 H 0.088 0.912 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 9.983 7.034 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.933 6.933 4 O -0.934 6.934 5 C -0.719 4.719 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.134 4.134 9 H 0.116 0.884 10 C 0.014 3.986 11 N -0.382 5.382 12 C 0.297 3.703 13 O -0.366 6.366 14 C -0.048 4.048 15 O -0.162 6.162 16 C 0.150 3.850 17 C -0.158 4.158 18 N 0.549 4.451 19 O -0.383 6.383 20 O -0.342 6.342 21 C -0.006 4.006 22 C -0.112 4.112 23 C -0.181 4.181 24 O -0.352 6.352 25 Si 0.591 3.409 26 C -0.049 4.049 27 C -0.226 4.226 28 C -0.151 4.151 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.184 0.816 40 H 0.101 0.899 41 H 0.237 0.763 42 H -0.176 1.176 43 H -0.172 1.172 44 H 0.157 0.843 45 H 0.174 0.826 46 H 0.107 0.893 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.747 10.450 5.350 11.763 hybrid contribution -0.540 -0.412 0.264 0.729 sum -1.287 10.037 5.614 11.572 Atomic orbital electron populations 1.30233 1.26600 1.11701 1.11888 1.07820 0.78502 0.75870 0.77293 1.93608 1.79221 1.34172 1.86312 1.93621 1.79067 1.66965 1.53768 1.31833 1.07728 1.12265 1.20053 0.82766 1.22594 0.90716 1.04694 0.95574 1.22450 0.98126 0.97615 0.95200 0.88428 1.21216 1.02383 0.95438 0.79587 1.45727 1.73141 1.09952 1.09430 1.19788 0.78128 0.86797 0.85599 1.90880 1.47954 1.15877 1.81876 1.22724 1.03610 0.88619 0.89857 1.86502 1.82040 1.32285 1.15363 1.18639 0.90532 0.92008 0.83852 1.20576 1.19289 0.81140 0.94812 1.43302 0.98432 1.02219 1.01109 1.94553 1.53464 1.36124 1.54203 1.94696 1.49165 1.90142 1.00160 1.20814 0.89395 0.98644 0.91725 1.19252 1.04498 0.91861 0.95598 1.24646 0.88423 1.12065 0.92997 1.86489 1.31511 1.82770 1.34436 0.94627 0.81339 0.74084 0.90836 1.21117 0.92309 0.99009 0.92502 1.21197 1.09307 0.94571 0.97560 1.22895 0.99628 0.98284 0.94261 0.85307 0.85156 0.85262 0.87918 0.88675 0.90213 0.90555 0.76259 0.88014 0.88062 0.81597 0.89903 0.76347 1.17597 1.17177 0.84255 0.82620 0.89300 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.80 10.62 101.05 1.07 3.87 16 2 S 2.42 -4.01 5.30 -107.50 -0.57 -4.58 16 3 O -0.94 -1.56 17.34 -57.83 -1.00 -2.57 16 4 O -0.94 -2.75 18.10 -57.83 -1.05 -3.80 16 5 C -0.61 2.51 3.82 -25.78 -0.10 2.42 16 6 H 0.15 -0.89 7.70 -51.93 -0.40 -1.29 16 7 C -0.10 0.34 7.26 -25.92 -0.19 0.15 16 8 C -0.11 0.54 3.93 -89.81 -0.35 0.18 16 9 H 0.10 -0.56 8.14 -51.93 -0.42 -0.98 16 10 C 0.14 -0.41 5.35 -4.04 -0.02 -0.43 16 11 N -0.73 2.66 5.56 -60.30 -0.33 2.32 16 12 C 0.51 -0.01 7.91 -10.98 -0.09 -0.10 16 13 O -0.49 -2.81 16.50 -14.35 -0.24 -3.04 16 14 C 0.03 -0.08 5.22 36.01 0.19 0.11 16 15 O -0.25 -0.61 7.68 -49.79 -0.38 -1.00 16 16 C 0.20 0.30 6.67 -39.22 -0.26 0.04 16 17 C -0.07 -0.26 6.87 -79.81 -0.55 -0.81 16 18 N 0.03 0.20 4.45 34.03 0.15 0.35 16 19 O -0.17 -1.28 18.45 -29.46 -0.54 -1.82 16 20 O -0.12 -1.03 17.24 -36.49 -0.63 -1.66 16 21 C 0.01 0.02 9.11 -39.61 -0.36 -0.34 16 22 C -0.11 0.03 5.42 -104.60 -0.57 -0.53 16 23 C -0.07 0.19 2.81 36.01 0.10 0.29 16 24 O -0.55 1.07 12.74 -35.23 -0.45 0.62 16 25 Si 0.69 -2.80 29.78 -169.99 -5.06 -7.86 16 26 C -0.03 0.05 8.66 -39.60 -0.34 -0.30 16 27 C -0.21 0.38 9.04 -39.44 -0.36 0.03 16 28 C -0.11 0.58 7.19 -25.78 -0.19 0.39 16 29 H 0.13 -0.78 8.14 -51.92 -0.42 -1.21 16 30 H 0.13 -0.53 8.14 -51.92 -0.42 -0.96 16 31 H 0.13 -0.73 8.14 -51.92 -0.42 -1.15 16 32 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 33 H 0.09 -0.35 8.10 -51.93 -0.42 -0.77 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.08 -0.17 7.37 -51.93 -0.38 -0.56 16 36 H 0.40 -2.86 8.47 -40.82 -0.35 -3.20 16 37 H 0.10 -0.58 7.65 -51.93 -0.40 -0.98 16 38 H 0.10 -0.58 7.67 -51.93 -0.40 -0.98 16 39 H 0.17 0.16 7.61 -52.48 -0.40 -0.24 16 40 H 0.08 -0.36 7.96 -51.93 -0.41 -0.77 16 41 H 0.39 -2.67 8.74 45.56 0.40 -2.27 16 42 H -0.25 0.54 7.11 56.52 0.40 0.94 16 43 H -0.25 0.31 7.11 56.52 0.40 0.71 16 44 H 0.14 -0.43 4.87 -52.49 -0.26 -0.68 16 45 H 0.16 -0.88 6.30 -52.48 -0.33 -1.21 16 46 H 0.09 -0.56 8.10 -51.93 -0.42 -0.98 16 47 H 0.11 -0.57 7.49 -51.93 -0.39 -0.96 16 LS Contribution 414.10 15.07 6.24 6.24 Total: 0.00 -18.93 414.10 -11.76 -30.70 By element: Atomic # 1 Polarization: -13.00 SS G_CDS: -5.89 Total: -18.89 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.01 Total: 4.98 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -0.18 Total: 2.67 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -4.29 Total: -13.25 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: -5.06 Total: -7.86 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -0.57 Total: -4.58 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -18.93 -11.76 -30.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.964 kcal (2) G-P(sol) polarization free energy of solvation -18.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds