Wall clock time and date at job start Sun Mar 7 2021 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.58335 * 2 1 4 4 O 1.42107 * 108.57743 * 228.97562 * 2 1 3 5 5 C 1.81398 * 101.92066 * 114.49050 * 2 1 3 6 6 H 1.08999 * 112.85190 * 53.80346 * 5 2 1 7 7 C 1.53782 * 113.61620 * 184.99661 * 5 2 1 8 8 C 1.53783 * 87.08323 * 139.98054 * 7 5 2 9 9 H 1.09006 * 113.61541 * 219.94160 * 8 7 5 10 10 C 1.52997 * 113.61575 * 89.11758 * 8 7 5 11 11 N 1.46497 * 109.46983 * 176.53209 * 10 8 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.46878 * 179.97438 * 14 12 11 16 16 C 1.35904 * 116.99628 * 179.97438 * 15 14 12 17 17 C 1.38709 * 120.05185 * 180.02562 * 16 15 14 18 18 N 1.48000 * 120.03322 * 359.95396 * 17 16 15 19 19 O 1.21798 * 120.00135 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99575 * 0.02562 * 18 17 16 21 21 C 1.38175 * 119.94024 * 179.97438 * 17 16 15 22 22 C 1.38236 * 120.05748 * 0.02562 * 21 17 16 23 23 C 1.50699 * 119.94510 * 180.02562 * 22 21 17 24 24 O 1.42901 * 109.47187 * 300.00031 * 23 22 21 25 25 Si 1.86303 * 109.47185 * 180.02562 * 23 22 21 26 26 C 1.38296 * 120.11152 * 359.97438 * 22 21 17 27 27 C 1.38116 * 120.05137 * 359.73915 * 26 22 21 28 28 C 1.53780 * 87.16924 * 334.52572 * 8 7 5 29 29 H 1.09001 * 109.46864 * 305.51316 * 1 2 3 30 30 H 1.09002 * 109.47497 * 65.50822 * 1 2 3 31 31 H 1.08999 * 109.47550 * 185.50882 * 1 2 3 32 32 H 1.09004 * 113.61081 * 25.43434 * 7 5 2 33 33 H 1.08995 * 113.61719 * 254.52784 * 7 5 2 34 34 H 1.09001 * 109.46832 * 56.53025 * 10 8 7 35 35 H 1.09002 * 109.47153 * 296.53216 * 10 8 7 36 36 H 0.96995 * 120.00423 * 359.97438 * 11 10 8 37 37 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 38 38 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 39 39 H 1.08003 * 119.96765 * 179.97438 * 21 17 16 40 40 H 1.08994 * 109.47223 * 60.00136 * 23 22 21 41 41 H 0.96703 * 114.00348 * 180.02562 * 24 23 22 42 42 H 1.48492 * 109.99859 * 298.67982 * 25 23 22 43 43 H 1.48497 * 109.99897 * 60.00004 * 25 23 22 44 44 H 1.07998 * 119.97055 * 179.97438 * 26 22 21 45 45 H 1.08009 * 120.02260 * 180.27721 * 27 26 22 46 46 H 1.09001 * 113.61077 * 140.02257 * 28 8 7 47 47 H 1.09004 * 113.61776 * 270.91965 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1886 -0.7358 1.6152 6 1 1.6957 -1.6959 1.7676 7 6 3.6893 -0.7538 1.9507 8 6 3.2921 -0.3795 3.3885 9 1 3.9586 0.3492 3.8500 10 6 3.0231 -1.5899 4.2848 11 7 2.7350 -1.1343 5.6470 12 6 2.4665 -2.0326 6.6153 13 8 2.4629 -3.2180 6.3588 14 6 2.1696 -1.5640 8.0165 15 8 1.9184 -2.6946 8.8536 16 6 1.6327 -2.4446 10.1586 17 6 1.3790 -3.4955 11.0277 18 7 1.4181 -4.8904 10.5348 19 8 1.1957 -5.8127 11.2986 20 8 1.6737 -5.1161 9.3655 21 6 1.0893 -3.2387 12.3541 22 6 1.0517 -1.9360 12.8150 23 6 0.7360 -1.6589 14.2623 24 8 -0.5600 -2.1738 14.5742 25 14 0.7619 0.1796 14.5626 26 6 1.3043 -0.8866 11.9504 27 6 1.6002 -1.1383 10.6250 28 6 2.0175 0.2418 2.7934 29 1 -0.3633 0.5970 0.8365 30 1 -0.3634 0.4260 -0.9352 31 1 -0.3634 -1.0229 0.0987 32 1 4.2603 0.0215 1.4397 33 1 4.1438 -1.7408 1.8663 34 1 3.9008 -2.2361 4.2957 35 1 2.1680 -2.1450 3.8989 36 1 2.7383 -0.1864 5.8523 37 1 3.0242 -1.0083 8.4025 38 1 1.2914 -0.9184 8.0053 39 1 0.8913 -4.0565 13.0312 40 1 1.4806 -2.1413 14.8954 41 1 -0.8300 -2.0303 15.4916 42 1 2.1132 0.7226 14.2722 43 1 -0.2493 0.8485 13.7053 44 1 1.2739 0.1303 12.3128 45 1 1.8018 -0.3186 9.9512 46 1 1.1231 0.0579 3.3887 47 1 2.1321 1.2887 2.5123 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:26:20 Heat of formation + Delta-G solvation = -109.634642 kcal Electronic energy + Delta-G solvation = -34866.612525 eV Core-core repulsion = 29727.991455 eV Total energy + Delta-G solvation = -5138.621070 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.116 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.37589 -41.87453 -41.02410 -40.09271 -39.28548 -38.02963 -37.64853 -37.40263 -37.08046 -35.60759 -33.64864 -32.45290 -30.92382 -30.41149 -28.54029 -27.91197 -26.85003 -26.55992 -25.20500 -24.08072 -22.80540 -21.83449 -20.56142 -20.47163 -19.86083 -19.73086 -19.23805 -18.74185 -18.54179 -18.43233 -18.24407 -17.68966 -17.47728 -17.15159 -16.93900 -16.83016 -16.50905 -16.12344 -15.98836 -15.88566 -15.35879 -15.16034 -14.88962 -14.49941 -14.28404 -14.15333 -14.04883 -13.96258 -13.86769 -13.81098 -13.63107 -13.29533 -13.22786 -13.08838 -13.02689 -12.79354 -12.76171 -12.70179 -12.42053 -12.32513 -12.22010 -11.99655 -11.97269 -11.64985 -11.60573 -11.18168 -10.97993 -10.90446 -10.42908 -10.24242 -9.84814 -4.88949 -1.40953 -0.94272 -0.36031 0.05011 0.25478 1.12008 1.27577 1.40057 1.68462 1.80725 1.90081 1.92175 2.23923 2.61301 2.89140 2.97699 3.07694 3.24302 3.25680 3.38206 3.41080 3.48742 3.52729 3.58588 3.64377 3.82892 3.92120 3.93667 4.05320 4.12427 4.14063 4.22939 4.23869 4.36671 4.40348 4.49192 4.56957 4.59881 4.69589 4.71451 4.86100 4.90572 4.92674 4.95096 4.95256 5.10811 5.19102 5.32250 5.63832 6.37511 6.39521 6.85811 7.09752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.416 3.584 3 O -0.977 6.977 4 O -0.996 6.996 5 C -0.595 4.595 6 H 0.173 0.827 7 C -0.115 4.115 8 C -0.102 4.102 9 H 0.115 0.885 10 C 0.135 3.865 11 N -0.704 5.704 12 C 0.509 3.491 13 O -0.565 6.565 14 C 0.022 3.978 15 O -0.288 6.288 16 C 0.194 3.806 17 C -0.101 4.101 18 N 0.034 4.966 19 O -0.192 6.192 20 O -0.171 6.171 21 C 0.001 3.999 22 C -0.117 4.117 23 C -0.088 4.088 24 O -0.568 6.568 25 Si 0.778 3.222 26 C -0.027 4.027 27 C -0.188 4.188 28 C -0.107 4.107 29 H 0.155 0.845 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.424 0.576 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.098 0.902 41 H 0.407 0.593 42 H -0.270 1.270 43 H -0.281 1.281 44 H 0.163 0.837 45 H 0.204 0.796 46 H 0.110 0.890 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 13.588 9.123 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.605 3.395 3 O -0.975 6.975 4 O -0.993 6.993 5 C -0.707 4.707 6 H 0.190 0.810 7 C -0.154 4.154 8 C -0.121 4.121 9 H 0.133 0.867 10 C 0.011 3.989 11 N -0.360 5.360 12 C 0.294 3.706 13 O -0.442 6.442 14 C -0.055 4.055 15 O -0.198 6.198 16 C 0.144 3.856 17 C -0.186 4.186 18 N 0.546 4.454 19 O -0.402 6.402 20 O -0.385 6.385 21 C -0.018 4.018 22 C -0.119 4.119 23 C -0.196 4.196 24 O -0.379 6.379 25 Si 0.680 3.320 26 C -0.045 4.045 27 C -0.207 4.207 28 C -0.145 4.145 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.262 0.738 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.116 0.884 41 H 0.259 0.741 42 H -0.196 1.196 43 H -0.208 1.208 44 H 0.180 0.820 45 H 0.221 0.779 46 H 0.128 0.872 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.554 14.087 7.366 15.972 hybrid contribution -0.322 -1.430 -0.287 1.494 sum -1.876 12.657 7.079 14.623 Atomic orbital electron populations 1.30103 1.22735 1.13542 1.13123 1.07606 0.79766 0.74488 0.77595 1.93547 1.80839 1.35913 1.87162 1.93545 1.81024 1.67836 1.56886 1.31741 1.07583 1.13340 1.18003 0.80964 1.22745 0.91192 1.04626 0.96818 1.22319 0.98769 0.97064 0.93984 0.86666 1.21177 1.01432 0.96037 0.80230 1.45556 1.71236 1.10664 1.08531 1.20380 0.76976 0.86148 0.87069 1.90861 1.51406 1.18861 1.83104 1.23147 1.07031 0.87776 0.87535 1.86475 1.82054 1.35222 1.16020 1.18844 0.90540 0.92605 0.83563 1.20871 1.22336 0.79103 0.96292 1.43793 0.97321 1.03714 1.00613 1.94500 1.53678 1.38001 1.53994 1.94680 1.51531 1.91067 1.01176 1.20883 0.90293 0.99665 0.90921 1.19691 1.03683 0.91214 0.97269 1.25023 0.88642 1.14167 0.91786 1.86443 1.31810 1.83216 1.36397 0.93418 0.78295 0.70648 0.89593 1.21494 0.90763 0.99659 0.92560 1.21684 1.06947 0.93996 0.98041 1.22993 1.00168 0.98075 0.93276 0.82692 0.85184 0.83451 0.88216 0.89013 0.91950 0.91256 0.73763 0.84044 0.83997 0.82195 0.88402 0.74077 1.19638 1.20807 0.82046 0.77924 0.87153 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.19 10.62 113.37 1.20 7.40 16 2 S 2.42 -5.82 5.30 -56.49 -0.30 -6.12 16 3 O -0.98 -4.46 17.34 -127.37 -2.21 -6.67 16 4 O -1.00 -8.16 18.10 -127.37 -2.31 -10.46 16 5 C -0.60 5.10 3.82 31.21 0.12 5.22 16 6 H 0.17 -2.11 7.70 -2.39 -0.02 -2.12 16 7 C -0.11 0.76 7.26 31.12 0.23 0.98 16 8 C -0.10 1.08 3.93 -10.27 -0.04 1.04 16 9 H 0.12 -1.57 8.14 -2.38 -0.02 -1.59 16 10 C 0.13 -0.86 5.35 86.38 0.46 -0.40 16 11 N -0.70 6.27 5.56 -463.06 -2.57 3.70 16 12 C 0.51 -0.22 7.91 87.66 0.69 0.48 16 13 O -0.56 -7.60 16.50 16.01 0.26 -7.34 16 14 C 0.02 -0.16 5.22 71.24 0.37 0.21 16 15 O -0.29 -1.46 7.68 -63.44 -0.49 -1.95 16 16 C 0.19 0.51 6.67 22.50 0.15 0.66 16 17 C -0.10 -0.86 6.87 36.48 0.25 -0.61 16 18 N 0.03 0.57 4.45 -46.24 -0.21 0.37 16 19 O -0.19 -3.50 18.45 18.89 0.35 -3.15 16 20 O -0.17 -3.67 17.24 25.60 0.44 -3.23 16 21 C 0.00 0.01 9.11 22.25 0.20 0.21 16 22 C -0.12 0.19 5.42 -19.85 -0.11 0.08 16 23 C -0.09 0.59 2.81 71.24 0.20 0.79 16 24 O -0.57 2.71 12.74 -148.98 -1.90 0.81 16 25 Si 0.78 -8.17 29.78 68.60 2.04 -6.12 16 26 C -0.03 0.15 8.66 22.25 0.19 0.34 16 27 C -0.19 1.27 9.04 22.36 0.20 1.47 16 28 C -0.11 1.31 7.19 31.21 0.22 1.53 16 29 H 0.15 -2.28 8.14 -2.39 -0.02 -2.30 16 30 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 32 H 0.10 -0.59 8.10 -2.38 -0.02 -0.60 16 33 H 0.09 -0.55 8.10 -2.39 -0.02 -0.57 16 34 H 0.06 -0.15 8.14 -2.39 -0.02 -0.16 16 35 H 0.07 -0.31 7.37 -2.39 -0.02 -0.33 16 36 H 0.42 -7.41 8.47 -92.71 -0.79 -8.19 16 37 H 0.14 -2.20 7.65 -2.39 -0.02 -2.22 16 38 H 0.14 -2.23 7.67 -2.39 -0.02 -2.25 16 39 H 0.16 0.64 7.61 -2.91 -0.02 0.62 16 40 H 0.10 -0.98 7.96 -2.39 -0.02 -1.00 16 41 H 0.41 -6.08 8.74 -74.06 -0.65 -6.73 16 42 H -0.27 1.94 7.11 99.48 0.71 2.65 16 43 H -0.28 1.33 7.11 99.48 0.71 2.03 16 44 H 0.16 -1.60 4.87 -2.91 -0.01 -1.61 16 45 H 0.20 -3.45 6.30 -2.91 -0.02 -3.47 16 46 H 0.11 -1.76 8.10 -2.39 -0.02 -1.78 16 47 H 0.11 -1.40 7.49 -2.38 -0.02 -1.41 16 Total: 0.00 -52.04 414.10 -2.87 -54.90 By element: Atomic # 1 Polarization: -33.79 SS G_CDS: -0.34 Total: -34.12 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 4.35 Total: 19.40 kcal Atomic # 7 Polarization: 6.84 SS G_CDS: -2.78 Total: 4.06 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -5.85 Total: -31.99 kcal Atomic # 14 Polarization: -8.17 SS G_CDS: 2.04 Total: -6.12 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -0.30 Total: -6.12 kcal Total: -52.04 -2.87 -54.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.730 kcal (2) G-P(sol) polarization free energy of solvation -52.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds