Wall clock time and date at job start Sun Mar 7 2021 12:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37637 * 125.67730 * 2 1 4 4 C 1.46674 * 126.22712 * 0.03156 * 3 2 1 5 5 O 1.21702 * 119.99574 * 5.48758 * 4 3 2 6 6 N 1.34769 * 120.00392 * 185.49703 * 4 3 2 7 7 C 1.46501 * 120.00204 * 185.10132 * 6 4 3 8 8 C 1.52999 * 109.47015 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.85068 * 316.19557 * 8 7 6 10 10 C 1.53780 * 113.61597 * 87.50465 * 8 7 6 11 11 C 1.53782 * 87.08434 * 89.11321 * 10 8 7 12 12 H 1.09000 * 113.60839 * 270.88703 * 11 10 8 13 13 S 1.81401 * 113.69158 * 139.99502 * 11 10 8 14 14 C 1.81402 * 101.92159 * 82.46404 * 13 11 10 15 15 O 1.42094 * 108.57520 * 196.95369 * 13 11 10 16 16 O 1.42100 * 108.57669 * 327.97815 * 13 11 10 17 17 C 1.53784 * 87.07920 * 25.43233 * 11 10 8 18 18 C 1.37885 * 107.54992 * 180.02562 * 3 2 1 19 19 C 1.39883 * 107.09151 * 359.76760 * 18 3 2 20 20 Br 1.89091 * 126.07309 * 180.23666 * 19 18 3 21 21 C 1.35502 * 107.85114 * 0.38541 * 19 18 3 22 22 C 1.50698 * 125.57208 * 179.87946 * 21 19 18 23 23 O 1.42895 * 109.47568 * 149.68773 * 22 21 19 24 24 Si 1.86300 * 109.47179 * 29.68689 * 22 21 19 25 25 H 1.09007 * 109.46757 * 265.37093 * 1 2 3 26 26 H 1.09004 * 109.47380 * 25.36663 * 1 2 3 27 27 H 1.08998 * 109.47323 * 145.37492 * 1 2 3 28 28 H 0.96996 * 119.99751 * 5.09084 * 6 4 3 29 29 H 1.09000 * 109.46868 * 299.99293 * 7 6 4 30 30 H 1.09004 * 109.46907 * 59.99468 * 7 6 4 31 31 H 1.08997 * 113.61617 * 203.66507 * 10 8 7 32 32 H 1.09005 * 113.60882 * 334.56491 * 10 8 7 33 33 H 1.08995 * 109.46943 * 59.99916 * 14 13 11 34 34 H 1.09001 * 109.47119 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.47187 * 300.00188 * 14 13 11 36 36 H 1.08995 * 113.61261 * 220.01870 * 17 11 10 37 37 H 1.08999 * 113.61075 * 89.11510 * 17 11 10 38 38 H 1.07995 * 126.45188 * 180.02562 * 18 3 2 39 39 H 1.09003 * 109.46914 * 269.68895 * 22 21 19 40 40 H 0.96701 * 114.00309 * 180.02562 * 23 22 21 41 41 H 1.48497 * 110.00085 * 59.99823 * 24 22 21 42 42 H 1.48498 * 110.00317 * 181.32111 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1180 0.0000 4 6 1.8121 2.5122 0.0007 5 8 0.6259 2.7647 0.1021 6 7 2.7070 3.5137 -0.1112 7 6 2.2660 4.9062 0.0015 8 6 3.4694 5.8370 -0.1610 9 1 4.3442 5.4986 0.3940 10 6 3.7699 6.2057 -1.6234 11 6 2.8093 7.3924 -1.4393 12 1 1.7717 7.1544 -1.6731 13 16 3.3779 8.9205 -2.2345 14 6 2.8425 8.6721 -3.9498 15 8 2.6521 10.0127 -1.6873 16 8 4.7983 8.9459 -2.2027 17 6 3.1345 7.3213 0.0620 18 6 3.5781 0.6890 -0.0006 19 6 3.5529 -0.7096 0.0045 20 35 5.0608 -1.8504 0.0124 21 6 2.2558 -1.1016 -0.0007 22 6 1.7712 -2.5285 -0.0004 23 8 0.5138 -2.6045 0.6740 24 14 3.0125 -3.6057 0.8769 25 1 -0.3633 -0.0829 1.0244 26 1 -0.3634 0.9286 -0.4403 27 1 -0.3634 -0.8456 -0.5839 28 1 3.6432 3.3125 -0.2662 29 1 1.5336 5.1194 -0.7771 30 1 1.8131 5.0658 0.9800 31 1 4.8043 6.5037 -1.7948 32 1 3.4170 5.4656 -2.3416 33 1 1.7595 8.5523 -3.9786 34 1 3.1289 9.5366 -4.5487 35 1 3.3178 7.7777 -4.3528 36 1 2.2687 7.4818 0.7044 37 1 3.9952 7.9243 0.3514 38 1 4.4582 1.3150 -0.0004 39 1 1.6538 -2.8725 -1.0281 40 1 0.1414 -3.4962 0.7127 41 1 3.1818 -3.1470 2.2791 42 1 2.5618 -5.0205 0.8562 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_5000100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:26:54 Heat of formation + Delta-G solvation = -62.385681 kcal Electronic energy + Delta-G solvation = -27969.461735 eV Core-core repulsion = 23705.570388 eV Total energy + Delta-G solvation = -4263.891347 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.028 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86346 -40.84616 -39.72696 -37.99316 -37.92969 -37.03825 -35.76218 -34.52528 -32.60618 -31.32508 -30.43079 -29.42337 -27.38109 -26.90423 -26.74529 -24.96918 -23.14599 -21.55482 -20.86418 -20.17025 -19.64693 -18.71634 -18.57469 -18.38194 -17.35903 -17.12293 -17.05945 -16.87519 -16.76326 -16.32823 -15.86291 -15.64962 -15.26525 -14.82343 -14.66856 -14.57133 -14.28257 -14.10428 -14.04630 -13.94406 -13.90467 -13.83908 -13.58557 -13.22619 -13.19676 -13.17416 -13.04452 -12.95124 -12.79402 -12.69790 -12.02423 -11.95777 -11.60482 -11.58678 -11.54989 -11.25284 -10.89958 -10.81791 -10.24347 -9.87034 -9.29824 -4.69061 -0.89828 0.15263 0.35592 0.89912 1.24719 1.41614 1.57432 1.85373 1.94850 2.13777 2.26980 2.66099 2.92656 2.93497 3.30309 3.44224 3.45631 3.48386 3.62186 3.66618 3.81000 4.08918 4.15496 4.17235 4.20906 4.27264 4.31358 4.40199 4.41951 4.60384 4.62859 4.64064 4.66283 4.75975 4.90857 4.95780 4.96941 4.99819 5.21876 5.27356 5.37505 5.61754 5.79046 6.39925 6.42909 7.04485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.391 5.391 3 C -0.061 4.061 4 C 0.590 3.410 5 O -0.579 6.579 6 N -0.699 5.699 7 C 0.138 3.862 8 C -0.105 4.105 9 H 0.112 0.888 10 C -0.109 4.109 11 C -0.593 4.593 12 H 0.177 0.823 13 S 2.417 3.583 14 C -0.644 4.644 15 O -0.994 6.994 16 O -0.979 6.979 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.195 4.195 20 Br 0.094 6.906 21 C 0.094 3.906 22 C -0.043 4.043 23 O -0.558 6.558 24 Si 0.619 3.381 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.420 0.580 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.192 0.808 39 H 0.112 0.888 40 H 0.402 0.598 41 H -0.298 1.298 42 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -4.032 -5.295 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.063 5.063 3 C -0.175 4.175 4 C 0.378 3.622 5 O -0.461 6.461 6 N -0.351 5.351 7 C 0.015 3.985 8 C -0.125 4.125 9 H 0.130 0.870 10 C -0.147 4.147 11 C -0.705 4.705 12 H 0.195 0.805 13 S 2.606 3.394 14 C -0.796 4.796 15 O -0.991 6.991 16 O -0.976 6.976 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.281 4.281 20 Br 0.177 6.823 21 C -0.029 4.029 22 C -0.153 4.153 23 O -0.368 6.368 24 Si 0.521 3.479 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.258 0.742 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.210 0.790 39 H 0.130 0.870 40 H 0.254 0.746 41 H -0.225 1.225 42 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges 2.217 -3.338 -4.117 5.745 hybrid contribution -1.897 -0.696 0.081 2.022 sum 0.320 -4.034 -4.036 5.715 Atomic orbital electron populations 1.22294 0.74388 1.05194 1.04200 1.43924 1.07830 1.04046 1.50508 1.20211 0.90385 0.87813 1.19067 1.16923 0.85366 0.83736 0.76134 1.90814 1.17692 1.85131 1.52423 1.45452 1.11915 1.05260 1.72473 1.21234 0.96332 0.78386 1.02578 1.22351 0.98480 0.93745 0.97940 0.86965 1.22931 0.98990 0.94697 0.98046 1.31696 1.12620 1.17209 1.08926 0.80532 1.07575 0.74767 0.77413 0.79601 1.30112 1.14450 1.13404 1.21603 1.93542 1.74970 1.52143 1.78486 1.93548 1.29719 1.87196 1.87140 1.22719 1.03615 0.97160 0.91530 1.21520 0.95653 0.92320 1.01973 1.20632 0.90287 0.95180 1.21970 1.96297 1.32417 1.56226 1.97337 1.20034 0.89423 0.88474 1.04936 1.24295 0.93465 0.94624 1.02901 1.86452 1.34396 1.36417 1.79526 0.92943 0.93685 0.78002 0.83288 0.90902 0.88761 0.87989 0.74198 0.90596 0.91459 0.87045 0.87347 0.83347 0.85281 0.82834 0.88661 0.88452 0.79040 0.87004 0.74587 1.22474 1.17822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 9.27 127.77 1.18 1.42 16 2 N -0.39 -1.62 3.16 -519.60 -1.64 -3.26 16 3 C -0.06 -0.12 6.88 40.35 0.28 0.16 16 4 C 0.59 1.35 7.77 86.45 0.67 2.02 16 5 O -0.58 -5.52 14.65 -4.36 -0.06 -5.59 16 6 N -0.70 3.98 5.53 -467.08 -2.58 1.39 16 7 C 0.14 -0.88 5.36 86.38 0.46 -0.41 16 8 C -0.11 1.04 3.94 -10.27 -0.04 1.00 16 9 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 10 C -0.11 1.21 7.16 31.12 0.22 1.44 16 11 C -0.59 5.36 3.82 31.12 0.12 5.47 16 12 H 0.18 -2.43 7.72 -2.39 -0.02 -2.45 16 13 S 2.42 -6.71 5.34 -56.49 -0.30 -7.01 16 14 C -0.64 6.34 10.62 113.37 1.20 7.54 16 15 O -0.99 -7.37 18.10 -127.37 -2.30 -9.67 16 16 O -0.98 -4.58 17.20 -127.37 -2.19 -6.77 16 17 C -0.11 0.77 7.26 31.12 0.23 1.00 16 18 C -0.09 0.22 10.33 22.58 0.23 0.45 16 19 C -0.20 -0.04 6.16 22.04 0.14 0.10 16 20 Br 0.09 -0.27 28.22 -20.37 -0.57 -0.85 16 21 C 0.09 0.26 6.19 41.34 0.26 0.51 16 22 C -0.04 0.01 2.89 71.24 0.21 0.21 16 23 O -0.56 -0.13 10.47 -148.98 -1.56 -1.69 16 24 Si 0.62 1.29 27.08 68.60 1.86 3.15 16 25 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 26 H 0.09 0.44 6.18 -2.39 -0.01 0.43 16 27 H 0.10 0.00 7.11 -2.39 -0.02 -0.02 16 28 H 0.42 -4.92 7.42 -92.71 -0.69 -5.61 16 29 H 0.08 -0.44 7.39 -2.39 -0.02 -0.46 16 30 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.11 -1.17 7.37 -2.39 -0.02 -1.18 16 32 H 0.11 -1.57 8.10 -2.38 -0.02 -1.59 16 33 H 0.15 -2.00 8.14 -2.39 -0.02 -2.02 16 34 H 0.13 -1.15 8.14 -2.39 -0.02 -1.16 16 35 H 0.15 -2.22 8.14 -2.39 -0.02 -2.24 16 36 H 0.09 -0.68 8.10 -2.39 -0.02 -0.70 16 37 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 38 H 0.19 -1.97 7.49 -2.91 -0.02 -2.00 16 39 H 0.11 -0.55 7.96 -2.39 -0.02 -0.57 16 40 H 0.40 -3.00 8.74 -74.06 -0.65 -3.65 16 41 H -0.30 -3.30 7.11 99.48 0.71 -2.60 16 42 H -0.25 -1.19 7.11 99.48 0.71 -0.48 16 Total: 0.00 -33.19 372.14 -4.43 -37.62 By element: Atomic # 1 Polarization: -28.01 SS G_CDS: -0.22 Total: -28.23 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 5.16 Total: 20.91 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -4.23 Total: -1.86 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -6.12 Total: -23.73 kcal Atomic # 14 Polarization: 1.29 SS G_CDS: 1.86 Total: 3.15 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -0.30 Total: -7.01 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.57 Total: -0.85 kcal Total: -33.19 -4.43 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_5000100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.769 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds