Wall clock time and date at job start Sun Mar 7 2021 12:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00255 * 2 1 4 4 C 1.50703 * 109.47107 * 293.95458 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47194 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.85241 * 45.33204 * 8 7 6 10 10 C 1.53781 * 113.61610 * 176.52955 * 8 7 6 11 11 C 1.53782 * 87.08462 * 89.11296 * 10 8 7 12 12 H 1.08993 * 113.61536 * 270.80526 * 11 10 8 13 13 S 1.81392 * 113.61373 * 139.98090 * 11 10 8 14 14 C 1.81401 * 101.92054 * 185.00266 * 13 11 10 15 15 O 1.42101 * 108.58088 * 299.48808 * 13 11 10 16 16 O 1.42099 * 108.58155 * 70.51787 * 13 11 10 17 17 C 1.53787 * 113.61519 * 274.13553 * 8 7 6 18 18 C 1.39669 * 110.99847 * 123.95449 * 2 1 3 19 19 C 1.38897 * 120.07557 * 115.77135 * 18 2 1 20 20 C 1.50698 * 120.03503 * 359.97438 * 19 18 2 21 21 O 1.42907 * 109.47237 * 284.99963 * 20 19 18 22 22 Si 1.86298 * 109.47034 * 165.00577 * 20 19 18 23 23 C 1.38123 * 119.92729 * 179.79120 * 19 18 2 24 24 C 1.38268 * 120.07077 * 0.48495 * 23 19 18 25 25 C 1.50705 * 119.92433 * 179.76810 * 24 23 19 26 26 F 1.39893 * 109.47105 * 179.97438 * 25 24 23 27 27 F 1.39904 * 109.47011 * 299.97625 * 25 24 23 28 28 F 1.39900 * 109.47248 * 59.97287 * 25 24 23 29 29 C 1.38305 * 120.15167 * 359.74113 * 24 23 19 30 30 C 1.38081 * 120.07393 * 0.03071 * 29 24 23 31 31 H 1.09005 * 109.46528 * 59.99744 * 1 2 3 32 32 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47044 * 300.00388 * 1 2 3 34 34 H 1.09002 * 109.47043 * 53.95437 * 3 2 1 35 35 H 1.09001 * 109.47354 * 173.95499 * 3 2 1 36 36 H 0.97005 * 119.99463 * 359.97438 * 6 4 3 37 37 H 1.09002 * 109.47021 * 299.99722 * 7 6 4 38 38 H 1.09001 * 109.47001 * 59.99554 * 7 6 4 39 39 H 1.09004 * 113.61469 * 203.66471 * 10 8 7 40 40 H 1.09004 * 113.61130 * 334.56199 * 10 8 7 41 41 H 1.08997 * 109.47187 * 60.00163 * 14 13 11 42 42 H 1.09000 * 109.47195 * 180.02562 * 14 13 11 43 43 H 1.08999 * 109.47038 * 300.00012 * 14 13 11 44 44 H 1.09000 * 113.61010 * 25.42893 * 17 8 7 45 45 H 1.08996 * 113.61679 * 156.33550 * 17 8 7 46 46 H 1.09000 * 109.47677 * 45.00172 * 20 19 18 47 47 H 0.96694 * 114.00468 * 300.00271 * 21 20 19 48 48 H 1.48500 * 110.00473 * 58.68001 * 22 20 19 49 49 H 1.48507 * 110.00216 * 180.02562 * 22 20 19 50 50 H 1.08000 * 119.96471 * 180.22466 * 23 19 18 51 51 H 1.07999 * 119.96366 * 179.97438 * 29 24 23 52 52 H 1.08004 * 120.03636 * 179.97438 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4454 -2.1411 6 7 2.0190 3.3198 -1.5238 7 6 1.6700 3.9769 -2.7857 8 6 2.2185 5.4052 -2.7858 9 1 3.2475 5.4635 -2.4310 10 6 1.9785 6.1572 -4.1055 11 6 0.6371 6.6155 -3.5093 12 1 -0.1862 5.9295 -3.7082 13 16 0.2243 8.3404 -3.8895 14 6 -1.2955 8.5824 -2.9291 15 8 1.2383 9.1778 -3.3510 16 8 -0.0932 8.4361 -5.2712 17 6 1.2791 6.4258 -2.1218 18 6 1.9695 -0.7283 1.0816 19 6 2.7068 -1.8845 0.8607 20 6 2.9676 -2.3555 -0.5468 21 8 1.7770 -2.9361 -1.0831 22 14 4.3277 -3.6285 -0.5337 23 6 3.2040 -2.6000 1.9325 24 6 2.9599 -2.1719 3.2244 25 6 3.4995 -2.9580 4.3914 26 9 3.1265 -2.3338 5.5865 27 9 2.9780 -4.2558 4.3606 28 9 4.8950 -3.0143 4.3105 29 6 2.2221 -1.0237 3.4480 30 6 1.7262 -0.3011 2.3810 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.5612 1.9273 0.8309 35 1 3.0798 1.3444 0.1082 36 1 2.5244 3.8010 -0.8499 37 1 2.1036 3.4208 -3.6169 38 1 0.5857 4.0044 -2.8933 39 1 2.6812 6.9726 -4.2775 40 1 1.8710 5.5006 -4.9689 41 1 -1.0879 8.4153 -1.8722 42 1 -1.6574 9.6006 -3.0721 43 1 -2.0546 7.8767 -3.2664 44 1 0.6074 5.9859 -1.3847 45 1 1.7909 7.3145 -1.7524 46 1 3.2685 -1.5086 -1.1636 47 1 1.4508 -3.6970 -0.5835 48 1 3.9429 -4.7742 0.3292 49 1 4.5948 -4.1007 -1.9162 50 1 3.7805 -3.4971 1.7613 51 1 2.0329 -0.6923 4.4583 52 1 1.1498 0.5953 2.5563 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_6406254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:27:11 Heat of formation + Delta-G solvation = -205.963645 kcal Electronic energy + Delta-G solvation = -41097.235623 eV Core-core repulsion = 35163.735346 eV Total energy + Delta-G solvation = -5933.500276 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.136 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -51.20533 -48.73211 -48.66938 -41.71053 -40.85241 -39.88937 -38.01355 -37.83246 -37.56785 -37.05521 -35.38565 -33.00962 -32.12846 -30.56335 -30.24519 -28.33906 -27.52162 -26.99006 -26.80906 -25.39808 -24.67203 -23.23245 -22.08680 -21.47731 -20.35189 -19.66785 -19.61996 -19.52770 -19.41522 -18.46409 -18.33242 -17.80658 -17.51294 -17.13457 -17.00806 -16.92532 -16.80019 -16.48841 -16.22915 -16.02548 -15.75607 -15.57628 -15.49978 -15.40379 -15.18545 -15.10946 -15.07489 -14.84156 -14.82923 -14.64670 -14.50498 -14.21524 -14.12130 -13.99123 -13.93407 -13.81784 -13.65956 -13.59810 -13.25140 -13.21543 -13.19746 -13.06231 -12.93618 -12.79365 -12.68439 -12.53248 -12.21885 -11.96571 -11.79385 -11.60058 -11.55637 -11.01785 -10.79004 -10.56640 -10.20201 -10.09248 -10.04445 -9.50810 -4.99281 -0.91732 -0.31547 0.03498 1.25786 1.50815 1.60002 1.67661 1.83176 1.91439 1.98827 2.20551 2.63439 2.65012 2.79610 2.92570 2.94755 3.29519 3.35101 3.41845 3.44204 3.51682 3.63737 3.65007 3.69092 3.81893 4.07040 4.07744 4.08863 4.15088 4.17069 4.24585 4.27242 4.36812 4.42564 4.46728 4.50566 4.57790 4.61147 4.64391 4.67677 4.77214 4.91085 4.92993 4.94276 4.96413 4.99754 5.00693 5.06094 5.20314 5.27557 5.43324 5.50760 5.70365 6.20192 6.54578 6.61732 7.33304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.501 5.501 3 C 0.037 3.963 4 C 0.512 3.488 5 O -0.564 6.564 6 N -0.716 5.716 7 C 0.138 3.862 8 C -0.103 4.103 9 H 0.110 0.890 10 C -0.115 4.115 11 C -0.592 4.592 12 H 0.174 0.826 13 S 2.415 3.585 14 C -0.642 4.642 15 O -0.979 6.979 16 O -0.996 6.996 17 C -0.106 4.106 18 C 0.144 3.856 19 C -0.097 4.097 20 C -0.055 4.055 21 O -0.534 6.534 22 Si 0.746 3.254 23 C -0.070 4.070 24 C -0.186 4.186 25 C 0.507 3.493 26 F -0.177 7.177 27 F -0.185 7.185 28 F -0.178 7.178 29 C -0.052 4.052 30 C -0.141 4.141 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.418 0.582 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.155 0.845 42 H 0.129 0.871 43 H 0.148 0.852 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.119 0.881 47 H 0.380 0.620 48 H -0.278 1.278 49 H -0.302 1.302 50 H 0.142 0.858 51 H 0.157 0.843 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 3.380 7.340 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.222 5.222 3 C -0.092 4.092 4 C 0.298 3.702 5 O -0.442 6.442 6 N -0.371 5.371 7 C 0.014 3.986 8 C -0.123 4.123 9 H 0.128 0.872 10 C -0.154 4.154 11 C -0.704 4.704 12 H 0.192 0.808 13 S 2.604 3.396 14 C -0.794 4.794 15 O -0.976 6.976 16 O -0.993 6.993 17 C -0.144 4.144 18 C 0.050 3.950 19 C -0.099 4.099 20 C -0.165 4.165 21 O -0.341 6.341 22 Si 0.652 3.348 23 C -0.088 4.088 24 C -0.188 4.188 25 C 0.453 3.547 26 F -0.158 7.158 27 F -0.167 7.167 28 F -0.159 7.159 29 C -0.070 4.070 30 C -0.161 4.161 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.173 0.827 42 H 0.148 0.852 43 H 0.167 0.833 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.137 0.863 47 H 0.228 0.772 48 H -0.204 1.204 49 H -0.230 1.230 50 H 0.160 0.840 51 H 0.174 0.826 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.531 3.028 5.115 5.968 hybrid contribution -1.574 -0.719 1.205 2.109 sum -1.043 2.310 6.320 6.809 Atomic orbital electron populations 1.22461 0.84434 1.02487 1.01811 1.59069 1.09588 1.13064 1.40512 1.22197 1.03778 0.88059 0.95146 1.20787 0.78740 0.81608 0.89027 1.90735 1.40819 1.64912 1.47781 1.45796 1.57888 1.13170 1.20199 1.21072 1.00214 0.91102 0.86181 1.22333 1.01334 0.92197 0.96403 0.87182 1.22739 0.92602 1.01247 0.98845 1.31718 1.08175 1.22028 1.08435 0.80817 1.07645 0.78005 0.78600 0.75359 1.30095 1.19866 1.12844 1.16619 1.93548 1.57710 1.65361 1.80984 1.93542 1.85395 1.86919 1.33461 1.22971 0.98311 1.01017 0.92137 1.18843 0.94105 0.93015 0.89026 1.20107 0.98959 0.95414 0.95377 1.24884 0.94322 1.04923 0.92325 1.86699 1.41995 1.49534 1.55894 0.94551 0.83531 0.78629 0.78128 1.20868 0.97713 0.99471 0.90732 1.19916 1.06864 0.99790 0.92194 1.18411 0.75752 0.77668 0.82867 1.93173 1.91224 1.82190 1.49233 1.93222 1.86628 1.40162 1.96641 1.93232 1.29985 1.96332 1.96339 1.21142 0.92913 0.91562 1.01417 1.21914 1.00911 1.01779 0.91486 0.90654 0.92142 0.93509 0.88149 0.85475 0.74443 0.92369 0.91378 0.88482 0.89012 0.82690 0.85240 0.83339 0.87131 0.87095 0.86279 0.77226 1.20416 1.22981 0.84029 0.82555 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 8.94 127.69 1.14 1.12 16 2 N -0.50 1.08 3.71 -724.42 -2.69 -1.61 16 3 C 0.04 -0.30 5.03 85.56 0.43 0.13 16 4 C 0.51 -1.44 7.55 87.66 0.66 -0.78 16 5 O -0.56 -4.36 14.31 -3.02 -0.04 -4.40 16 6 N -0.72 6.47 5.56 -463.07 -2.57 3.90 16 7 C 0.14 -0.97 5.35 86.38 0.46 -0.51 16 8 C -0.10 1.07 3.93 -10.27 -0.04 1.03 16 9 H 0.11 -1.38 8.14 -2.39 -0.02 -1.40 16 10 C -0.12 0.77 7.26 31.12 0.23 0.99 16 11 C -0.59 5.36 3.82 31.22 0.12 5.48 16 12 H 0.17 -2.30 7.70 -2.39 -0.02 -2.31 16 13 S 2.41 -6.72 5.30 -56.49 -0.30 -7.02 16 14 C -0.64 6.61 10.62 113.37 1.20 7.82 16 15 O -0.98 -4.46 17.34 -127.37 -2.21 -6.66 16 16 O -1.00 -7.67 18.10 -127.37 -2.30 -9.98 16 17 C -0.11 1.30 7.19 31.22 0.22 1.52 16 18 C 0.14 -0.52 4.65 38.22 0.18 -0.35 16 19 C -0.10 0.20 5.28 -19.73 -0.10 0.10 16 20 C -0.05 0.00 2.34 71.24 0.17 0.16 16 21 O -0.53 -2.11 12.88 -148.98 -1.92 -4.03 16 22 Si 0.75 -0.72 30.24 68.60 2.07 1.36 16 23 C -0.07 0.16 8.20 22.25 0.18 0.34 16 24 C -0.19 0.42 5.37 -19.84 -0.11 0.32 16 25 C 0.51 0.23 3.31 71.24 0.24 0.47 16 26 F -0.18 -0.10 15.96 44.97 0.72 0.62 16 27 F -0.19 -0.61 17.24 44.97 0.78 0.16 16 28 F -0.18 -0.29 17.23 44.97 0.78 0.49 16 29 C -0.05 0.30 9.42 22.25 0.21 0.51 16 30 C -0.14 1.03 8.70 22.40 0.19 1.22 16 31 H 0.07 0.29 5.88 -2.38 -0.01 0.28 16 32 H 0.06 0.11 8.12 -2.39 -0.02 0.09 16 33 H 0.05 -0.26 7.48 -2.39 -0.02 -0.27 16 34 H 0.10 -1.39 7.48 -2.39 -0.02 -1.41 16 35 H 0.13 -1.45 8.06 -2.39 -0.02 -1.47 16 36 H 0.42 -6.55 8.47 -92.70 -0.79 -7.33 16 37 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.07 -0.40 7.37 -2.39 -0.02 -0.42 16 39 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 40 H 0.09 -0.58 8.10 -2.38 -0.02 -0.60 16 41 H 0.15 -2.37 8.14 -2.39 -0.02 -2.39 16 42 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H 0.15 -2.06 8.14 -2.39 -0.02 -2.08 16 44 H 0.11 -1.78 8.10 -2.39 -0.02 -1.80 16 45 H 0.11 -1.31 7.49 -2.39 -0.02 -1.33 16 46 H 0.12 0.13 7.78 -2.39 -0.02 0.11 16 47 H 0.38 -0.74 8.70 -74.06 -0.64 -1.38 16 48 H -0.28 -0.57 6.69 99.48 0.67 0.09 16 49 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 50 H 0.14 -0.41 4.86 -2.91 -0.01 -0.42 16 51 H 0.16 -1.36 7.15 -2.91 -0.02 -1.38 16 52 H 0.16 -1.93 7.16 -2.91 -0.02 -1.95 16 Total: 0.00 -35.72 447.36 -2.74 -38.46 By element: Atomic # 1 Polarization: -30.43 SS G_CDS: -0.43 Total: -30.86 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.39 Total: 19.58 kcal Atomic # 7 Polarization: 7.55 SS G_CDS: -5.26 Total: 2.29 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -6.48 Total: -25.07 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 2.27 Total: 1.27 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.07 Total: 1.36 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -0.30 Total: -7.02 kcal Total: -35.72 -2.74 -38.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_6406254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.504 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds