Wall clock time and date at job start Sun Mar 7 2021 10:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21278 * 120.00478 * 2 1 4 4 C 1.50704 * 119.99613 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46783 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47165 * 304.99763 * 5 4 2 7 7 C 1.52998 * 109.47123 * 65.00521 * 5 4 2 8 8 C 1.52996 * 109.47125 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46870 * 299.99581 * 8 7 5 10 10 H 1.09003 * 109.47242 * 299.99798 * 9 8 7 11 11 C 1.53007 * 109.46685 * 180.02562 * 9 8 7 12 12 N 1.46492 * 109.47439 * 65.00138 * 11 9 8 13 13 C 1.34776 * 119.99973 * 179.97438 * 12 11 9 14 14 O 1.21281 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.46506 * 109.47042 * 180.02562 * 15 13 12 17 17 C 1.36831 * 125.06031 * 265.02641 * 16 15 13 18 18 C 1.34241 * 109.93666 * 179.97438 * 17 16 15 19 19 C 1.50696 * 126.49924 * 179.97438 * 18 17 16 20 20 O 1.42894 * 109.47306 * 105.02391 * 19 18 17 21 21 Si 1.86309 * 109.47211 * 345.02585 * 19 18 17 22 22 C 1.46483 * 107.00010 * 0.02562 * 18 17 16 23 23 C 1.39594 * 134.04211 * 180.02562 * 22 18 17 24 24 C 1.36664 * 119.76694 * 179.97438 * 23 22 18 25 25 C 1.38786 * 120.52938 * 0.02562 * 24 23 22 26 26 C 1.37786 * 120.66663 * 359.97438 * 25 24 23 27 27 C 1.37687 * 125.06497 * 84.71703 * 16 15 13 28 28 C 1.52998 * 109.47226 * 60.00080 * 9 8 7 29 29 C 1.52996 * 109.47134 * 300.00157 * 28 9 8 30 30 H 0.97000 * 120.00231 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00073 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47056 * 60.00703 * 4 2 1 33 33 H 1.09000 * 109.47350 * 300.00103 * 4 2 1 34 34 H 1.09007 * 109.46942 * 299.99756 * 7 5 4 35 35 H 1.08998 * 109.47475 * 59.99121 * 7 5 4 36 36 H 1.09001 * 109.47218 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47112 * 59.99999 * 8 7 5 38 38 H 1.08996 * 109.46934 * 304.99572 * 11 9 8 39 39 H 1.09004 * 109.46597 * 185.00368 * 11 9 8 40 40 H 0.97005 * 119.99789 * 359.97438 * 12 11 9 41 41 H 1.08996 * 109.47541 * 60.00533 * 15 13 12 42 42 H 1.08998 * 109.47222 * 300.00184 * 15 13 12 43 43 H 1.07999 * 125.02979 * 359.96210 * 17 16 15 44 44 H 1.09001 * 109.47007 * 225.02723 * 19 18 17 45 45 H 0.96701 * 114.00662 * 179.97438 * 20 19 18 46 46 H 1.48504 * 109.99844 * 60.00129 * 21 19 18 47 47 H 1.48495 * 109.99958 * 181.32007 * 21 19 18 48 48 H 1.07997 * 120.11321 * 359.97438 * 23 22 18 49 49 H 1.08002 * 119.73224 * 180.02562 * 24 23 22 50 50 H 1.08000 * 119.66743 * 179.97438 * 25 24 23 51 51 H 1.08000 * 120.11478 * 179.97438 * 26 25 24 52 52 H 1.09001 * 109.46556 * 60.00015 * 28 9 8 53 53 H 1.08994 * 109.46977 * 179.97438 * 28 9 8 54 54 H 1.09001 * 109.47230 * 180.02562 * 29 28 9 55 55 H 1.09006 * 109.47194 * 299.99898 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3052 0.0006 5 6 3.6055 -1.0256 -0.0002 6 1 3.8547 -0.3803 -0.8425 7 6 3.9960 -0.3323 1.3066 8 6 5.5001 -0.0522 1.3055 9 6 6.2645 -1.3716 1.1801 10 1 6.0157 -2.0172 2.0224 11 6 7.7687 -1.0915 1.1797 12 7 8.1626 -0.5373 2.4773 13 6 9.4500 -0.2123 2.7084 14 8 10.2823 -0.3782 1.8420 15 6 9.8550 0.3583 4.0431 16 7 11.2954 0.6264 4.0427 17 6 12.2540 -0.2275 4.5161 18 6 13.4699 0.3214 4.3672 19 6 14.7866 -0.2957 4.7628 20 8 15.4707 -0.7491 3.5930 21 14 14.4792 -1.7385 5.9008 22 6 13.2741 1.6346 3.7483 23 6 14.1359 2.6584 3.3512 24 6 13.6259 3.7939 2.7869 25 6 12.2574 3.9378 2.6058 26 6 11.3888 2.9398 2.9905 27 6 11.8865 1.7727 3.5605 28 6 5.8739 -2.0650 -0.1267 29 6 4.3698 -2.3451 -0.1257 30 1 -0.4850 -0.8400 0.0004 31 1 -0.4850 0.8400 -0.0004 32 1 1.8379 -1.8771 -0.8892 33 1 1.8378 -1.8764 0.8908 34 1 3.4517 0.6080 1.3958 35 1 3.7467 -0.9776 2.1489 36 1 5.7784 0.4413 2.2367 37 1 5.7489 0.5934 0.4633 38 1 8.0047 -0.3759 0.3921 39 1 8.3111 -2.0200 1.0013 40 1 7.4968 -0.4042 3.1701 41 1 9.6185 -0.3568 4.8309 42 1 9.3130 1.2871 4.2208 43 1 12.0609 -1.1992 4.9461 44 1 15.3969 0.4478 5.2754 45 1 16.3283 -1.1582 3.7726 46 1 13.6481 -2.7594 5.2135 47 1 15.7712 -2.3361 6.3235 48 1 15.2018 2.5536 3.4893 49 1 14.2932 4.5855 2.4794 50 1 11.8694 4.8411 2.1588 51 1 10.3255 3.0613 2.8458 52 1 6.1228 -1.4194 -0.9689 53 1 6.4188 -3.0047 -0.2162 54 1 4.0917 -2.8395 -1.0564 55 1 4.1210 -2.9906 0.7167 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17846942_9818708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:21:55 Heat of formation + Delta-G solvation = -61.571360 kcal Electronic energy + Delta-G solvation = -35393.489216 eV Core-core repulsion = 30782.263940 eV Total energy + Delta-G solvation = -4611.225277 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.204 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.53840 -41.09258 -40.62335 -39.29223 -38.10681 -37.74243 -36.18883 -34.62940 -34.27659 -33.47611 -31.65341 -31.49969 -30.30385 -29.79152 -28.55514 -26.15091 -25.16969 -23.80339 -23.67234 -22.72650 -22.18063 -21.65598 -21.06161 -20.67221 -20.53012 -18.60124 -18.48915 -18.19879 -18.13864 -17.72197 -17.57919 -16.77109 -16.72157 -16.42897 -16.26137 -15.98539 -15.77418 -15.53514 -15.20809 -15.19650 -14.92778 -14.89395 -14.78176 -14.64941 -14.41932 -14.25698 -14.13006 -13.83701 -13.54046 -13.32137 -13.20389 -13.00481 -12.74265 -12.65261 -12.58223 -12.52804 -12.48109 -12.10323 -11.99850 -11.82788 -11.72947 -11.42593 -11.33660 -11.24203 -10.97517 -10.70710 -10.55600 -10.50872 -10.35078 -10.21708 -9.16937 -8.64472 -4.90948 0.12697 0.63054 1.31228 1.38223 1.43270 1.61528 1.70813 1.72021 1.97647 2.19583 2.69827 2.92648 3.54996 3.56461 3.58553 3.70264 3.73881 3.78500 3.79169 3.82681 3.98339 4.00851 4.04397 4.12815 4.19285 4.21825 4.27010 4.36759 4.39791 4.48330 4.51941 4.56160 4.59153 4.62623 4.64901 4.70132 4.72147 4.78056 4.83589 4.84045 4.89396 5.00425 5.13178 5.14758 5.18794 5.23848 5.27824 5.32755 5.38841 5.50167 5.53478 5.61528 5.64961 5.72238 5.74733 5.93754 6.16521 6.22329 6.44771 6.52191 6.67770 7.10912 7.41007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.506 3.494 3 O -0.591 6.591 4 C -0.135 4.135 5 C -0.073 4.073 6 H 0.050 0.950 7 C -0.116 4.116 8 C -0.109 4.109 9 C -0.083 4.083 10 H 0.098 0.902 11 C 0.126 3.874 12 N -0.708 5.708 13 C 0.487 3.513 14 O -0.579 6.579 15 C 0.088 3.912 16 N -0.466 5.466 17 C 0.073 3.927 18 C -0.182 4.182 19 C -0.058 4.058 20 O -0.565 6.565 21 Si 0.783 3.217 22 C -0.117 4.117 23 C -0.086 4.086 24 C -0.153 4.153 25 C -0.107 4.107 26 C -0.136 4.136 27 C 0.090 3.910 28 C -0.115 4.115 29 C -0.106 4.106 30 H 0.417 0.583 31 H 0.402 0.598 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.420 0.580 41 H 0.167 0.833 42 H 0.146 0.854 43 H 0.194 0.806 44 H 0.080 0.920 45 H 0.389 0.611 46 H -0.291 1.291 47 H -0.284 1.284 48 H 0.123 0.877 49 H 0.139 0.861 50 H 0.146 0.854 51 H 0.131 0.869 52 H 0.051 0.949 53 H 0.071 0.929 54 H 0.071 0.929 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 -4.597 6.729 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.293 3.707 3 O -0.472 6.472 4 C -0.175 4.175 5 C -0.092 4.092 6 H 0.068 0.932 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.102 4.102 10 H 0.116 0.884 11 C 0.002 3.998 12 N -0.362 5.362 13 C 0.272 3.728 14 O -0.457 6.457 15 C -0.036 4.036 16 N -0.149 5.149 17 C -0.052 4.052 18 C -0.189 4.189 19 C -0.166 4.166 20 O -0.375 6.375 21 Si 0.686 3.314 22 C -0.122 4.122 23 C -0.104 4.104 24 C -0.172 4.172 25 C -0.126 4.126 26 C -0.156 4.156 27 C -0.015 4.015 28 C -0.153 4.153 29 C -0.144 4.144 30 H 0.248 0.752 31 H 0.232 0.768 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.258 0.742 41 H 0.184 0.816 42 H 0.164 0.836 43 H 0.210 0.790 44 H 0.098 0.902 45 H 0.239 0.761 46 H -0.218 1.218 47 H -0.211 1.211 48 H 0.141 0.859 49 H 0.157 0.843 50 H 0.163 0.837 51 H 0.149 0.851 52 H 0.070 0.930 53 H 0.090 0.910 54 H 0.090 0.910 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.633 -4.858 5.966 12.328 hybrid contribution 0.482 0.188 -1.214 1.320 sum -9.151 -4.669 4.752 11.319 Atomic orbital electron populations 1.43901 1.06764 1.13599 1.76657 1.21299 0.83296 0.92100 0.74020 1.90724 1.69096 1.35801 1.51593 1.21804 0.94911 0.94158 1.06583 1.20901 0.92995 0.96975 0.98356 0.93155 1.21641 0.95458 1.00919 0.97272 1.21539 0.95176 0.96315 1.01652 1.21336 0.91187 0.97646 1.00034 0.88401 1.21363 0.95838 0.97883 0.84669 1.45831 1.08622 1.64508 1.17273 1.21561 0.82713 0.77999 0.90500 1.90813 1.52145 1.54773 1.47999 1.22010 0.78996 1.06619 0.95988 1.43412 1.05973 1.13899 1.51611 1.21928 0.87052 0.95808 1.00433 1.19766 0.93643 0.94984 1.10485 1.24490 0.91815 1.07107 0.93183 1.86626 1.37392 1.80659 1.32817 0.94241 0.80817 0.74218 0.82125 1.19371 0.92739 0.95949 1.04100 1.20455 0.99229 0.92693 0.98066 1.20927 0.95960 0.98360 1.01927 1.21138 0.93165 0.98955 0.99365 1.20249 1.00484 0.92007 1.02850 1.18427 0.92160 0.89663 1.01270 1.21507 0.96926 1.00470 0.96404 1.21536 0.93537 0.96108 1.03182 0.75156 0.76762 0.86834 0.86269 0.92549 0.90739 0.91011 0.93922 0.93640 0.92480 0.74198 0.81558 0.83607 0.78953 0.90209 0.76094 1.21849 1.21092 0.85942 0.84285 0.83658 0.85109 0.93001 0.91013 0.91009 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 5.69 8.87 -173.54 -1.54 4.15 16 2 C 0.51 -0.07 7.82 87.66 0.69 0.62 16 3 O -0.59 -6.01 14.80 -3.02 -0.04 -6.05 16 4 C -0.14 0.89 5.18 29.85 0.15 1.05 16 5 C -0.07 0.20 1.84 -10.79 -0.02 0.18 16 6 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 7 C -0.12 0.22 4.94 30.59 0.15 0.37 16 8 C -0.11 0.29 5.08 30.59 0.16 0.44 16 9 C -0.08 0.40 2.22 -10.79 -0.02 0.38 16 10 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C 0.13 0.00 5.07 86.38 0.44 0.44 16 12 N -0.71 2.32 5.28 -463.07 -2.45 -0.12 16 13 C 0.49 1.51 7.90 87.66 0.69 2.20 16 14 O -0.58 -9.33 16.42 -3.03 -0.05 -9.38 16 15 C 0.09 -0.35 6.48 85.63 0.56 0.20 16 16 N -0.47 -2.47 2.27 -519.98 -1.18 -3.65 16 17 C 0.07 0.41 9.89 83.00 0.82 1.23 16 18 C -0.18 -1.72 5.61 -18.63 -0.10 -1.83 16 19 C -0.06 -0.31 3.05 71.23 0.22 -0.09 16 20 O -0.57 -5.30 12.85 -148.98 -1.92 -7.22 16 21 Si 0.78 -0.11 30.79 68.60 2.11 2.00 16 22 C -0.12 -1.50 6.35 -20.20 -0.13 -1.62 16 23 C -0.09 -0.95 10.05 22.23 0.22 -0.73 16 24 C -0.15 -1.24 9.97 22.03 0.22 -1.02 16 25 C -0.11 -0.75 10.01 22.29 0.22 -0.53 16 26 C -0.14 -1.09 10.00 22.37 0.22 -0.87 16 27 C 0.09 0.94 6.80 39.03 0.27 1.21 16 28 C -0.11 0.43 5.21 30.59 0.16 0.59 16 29 C -0.11 0.65 5.20 30.59 0.16 0.81 16 30 H 0.42 -5.60 8.83 -92.71 -0.82 -6.42 16 31 H 0.40 -2.59 8.93 -92.71 -0.83 -3.42 16 32 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.12 -1.35 8.14 -2.39 -0.02 -1.37 16 34 H 0.06 0.25 5.95 -2.38 -0.01 0.23 16 35 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.07 -0.37 7.18 -2.39 -0.02 -0.39 16 37 H 0.04 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.42 -4.53 7.65 -92.70 -0.71 -5.24 16 41 H 0.17 -2.15 8.12 -2.39 -0.02 -2.17 16 42 H 0.15 -1.38 8.14 -2.39 -0.02 -1.40 16 43 H 0.19 -0.17 6.30 -2.91 -0.02 -0.19 16 44 H 0.08 0.19 7.96 -2.39 -0.02 0.17 16 45 H 0.39 0.07 8.74 -74.06 -0.65 -0.57 16 46 H -0.29 -1.65 7.04 99.48 0.70 -0.95 16 47 H -0.28 -1.02 7.11 99.48 0.71 -0.31 16 48 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.14 0.48 8.06 -2.91 -0.02 0.45 16 50 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 51 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 52 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 53 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 54 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 55 H 0.08 -0.72 8.14 -2.38 -0.02 -0.74 16 Total: 0.00 -38.52 441.65 -2.03 -40.55 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -2.03 Total: -23.29 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.07 Total: 3.02 kcal Atomic # 7 Polarization: 5.54 SS G_CDS: -5.17 Total: 0.38 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -2.01 Total: -22.66 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: 2.11 Total: 2.00 kcal Total: -38.52 -2.03 -40.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17846942_9818708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.025 kcal (2) G-P(sol) polarization free energy of solvation -38.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds