Wall clock time and date at job start Sun Mar 7 2021 15:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86300 * 109.47427 * 2 1 4 4 C 1.50704 * 109.47116 * 120.00195 * 2 1 3 5 5 C 1.34828 * 125.65400 * 64.96950 * 4 2 1 6 6 C 1.40797 * 107.05339 * 180.02562 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.93954 * 180.02562 * 7 6 5 9 9 C 1.39922 * 119.96127 * 359.72351 * 8 7 6 10 10 C 1.36423 * 120.28187 * 179.75813 * 9 8 7 11 11 C 1.39875 * 120.18219 * 0.52116 * 10 9 8 12 12 C 1.47298 * 120.04379 * 179.71539 * 11 10 9 13 13 O 1.21627 * 119.99888 * 180.02562 * 12 11 10 14 14 N 1.34779 * 120.00359 * 0.02562 * 12 11 10 15 15 C 1.46490 * 120.00462 * 180.02562 * 14 12 11 16 16 H 1.09006 * 109.47593 * 34.99737 * 15 14 12 17 17 C 1.52993 * 109.47460 * 155.00120 * 15 14 12 18 18 C 1.53000 * 109.47472 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.47089 * 300.00016 * 18 17 15 20 20 H 1.09000 * 109.46995 * 299.99625 * 19 18 17 21 21 O 1.42898 * 109.47207 * 179.97438 * 19 18 17 22 22 C 1.42900 * 114.00115 * 149.99626 * 21 19 18 23 23 F 1.39906 * 109.46726 * 60.00261 * 22 21 19 24 24 F 1.39894 * 109.47202 * 180.02562 * 22 21 19 25 25 F 1.39899 * 109.47582 * 300.00532 * 22 21 19 26 26 C 1.52993 * 109.46977 * 59.99680 * 19 18 17 27 27 C 1.53000 * 109.47472 * 300.00085 * 26 19 18 28 28 C 1.40403 * 119.91070 * 359.73512 * 11 10 9 29 29 O 1.35679 * 120.13780 * 180.02562 * 28 11 10 30 30 C 1.38267 * 119.72538 * 0.02562 * 28 11 10 31 31 O 1.34228 * 125.65131 * 244.97401 * 4 2 1 32 32 H 0.96699 * 114.00113 * 300.00255 * 1 2 3 33 33 H 1.09003 * 109.47143 * 239.99588 * 2 1 3 34 34 H 1.48502 * 110.00020 * 178.68256 * 3 2 1 35 35 H 1.48497 * 109.99559 * 299.99920 * 3 2 1 36 36 H 1.08003 * 126.47436 * 359.97438 * 5 4 2 37 37 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 38 38 H 1.08007 * 119.85667 * 0.02562 * 9 8 7 39 39 H 1.07997 * 119.91083 * 180.23409 * 10 9 8 40 40 H 0.96999 * 119.99452 * 0.02562 * 14 12 11 41 41 H 1.09002 * 109.47362 * 299.99593 * 17 15 14 42 42 H 1.09000 * 109.47304 * 59.99916 * 17 15 14 43 43 H 1.08998 * 109.47381 * 59.99886 * 18 17 15 44 44 H 1.08999 * 109.47552 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47304 * 60.00133 * 26 19 18 46 46 H 1.09002 * 109.47362 * 180.02562 * 26 19 18 47 47 H 1.09000 * 109.46896 * 300.00298 * 27 26 19 48 48 H 1.08999 * 109.47552 * 179.97438 * 27 26 19 49 49 H 0.96698 * 114.00227 * 269.98330 * 29 28 11 50 50 H 1.08002 * 120.09551 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7562 -2.0179 1.5096 6 6 2.3797 -2.2628 2.7480 7 6 2.9067 -1.0782 3.1624 8 6 3.6559 -0.8540 4.4137 9 6 3.8721 -1.9161 5.2986 10 6 4.5680 -1.7174 6.4550 11 6 5.0613 -0.4468 6.7693 12 6 5.8070 -0.2342 8.0217 13 8 6.2351 0.8711 8.2944 14 7 6.0148 -1.2645 8.8655 15 6 6.7559 -1.0530 10.1113 16 1 6.5318 -0.0610 10.5035 17 6 6.3437 -2.1116 11.1360 18 6 7.1182 -1.8912 12.4369 19 6 8.6191 -2.0043 12.1623 20 1 8.8429 -2.9964 11.7700 21 8 9.3425 -1.7978 13.3773 22 6 10.5851 -2.5007 13.4405 23 9 11.4114 -2.0823 12.3919 24 9 11.2106 -2.2330 14.6629 25 9 10.3497 -3.8752 13.3288 26 6 9.0313 -0.9457 11.1377 27 6 8.2569 -1.1662 9.8367 28 6 4.8443 0.6258 5.8896 29 8 5.3212 1.8601 6.1897 30 6 4.1427 0.4190 4.7163 31 8 2.6271 -0.1465 2.2302 32 1 -0.3933 0.4417 0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 3.5346 1.7702 0.0321 35 1 1.5615 2.4678 -1.2085 36 1 1.2354 -2.7406 0.8990 37 1 2.4330 -3.2084 3.2669 38 1 3.4900 -2.8985 5.0630 39 1 4.7347 -2.5422 7.1318 40 1 5.6737 -2.1460 8.6477 41 1 5.2743 -2.0313 11.3313 42 1 6.5679 -3.1036 10.7438 43 1 6.8944 -0.8992 12.8293 44 1 6.8248 -2.6457 13.1668 45 1 8.8076 0.0463 11.5300 46 1 10.1006 -1.0266 10.9417 47 1 8.4806 -2.1582 9.4444 48 1 8.5502 -0.4117 9.1068 49 1 4.7046 2.4080 6.6943 50 1 3.9720 1.2399 4.0355 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:01:37 Heat of formation + Delta-G solvation = -271.069526 kcal Electronic energy + Delta-G solvation = -40800.567348 eV Core-core repulsion = 34731.995917 eV Total energy + Delta-G solvation = -6068.571431 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.137 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -51.26090 -49.01613 -48.94327 -43.74226 -41.68413 -40.62599 -39.60314 -38.13158 -37.88535 -37.72597 -35.00214 -34.21633 -33.35384 -31.97249 -31.33928 -30.72617 -29.68399 -27.06594 -26.31003 -24.65282 -24.06729 -23.94861 -23.40854 -22.37565 -21.83172 -21.44197 -21.23574 -20.45119 -19.97085 -19.79621 -19.64501 -18.74384 -18.50798 -17.73304 -17.60805 -17.37983 -16.88294 -16.64978 -16.37083 -16.22036 -16.09321 -15.95830 -15.74549 -15.73688 -15.52516 -15.49128 -15.37768 -15.32408 -15.13562 -15.07892 -14.74120 -14.60681 -14.40672 -14.35972 -14.25398 -13.98482 -13.90093 -13.86315 -13.57924 -13.51125 -13.33234 -12.99101 -12.82691 -12.74587 -12.68581 -12.27270 -12.24925 -12.11433 -11.86418 -11.59448 -11.22360 -11.12361 -10.88942 -10.73132 -10.58014 -10.11846 -9.93605 -9.00826 -5.06574 -0.77937 0.16484 0.65084 0.80658 1.12714 1.39689 1.46417 1.74395 1.86535 1.93521 1.96735 2.10072 2.66401 2.94173 3.03147 3.03987 3.29381 3.41777 3.48057 3.52042 3.61879 3.66699 3.84327 3.87761 3.89086 3.96117 3.99394 4.02776 4.08490 4.23343 4.24745 4.31352 4.36618 4.41793 4.46089 4.63226 4.65632 4.71121 4.76192 4.79852 4.89225 4.96088 5.03199 5.04984 5.06996 5.08895 5.13537 5.20509 5.23453 5.36779 5.42933 5.45887 5.55633 5.96995 6.50316 6.59832 6.72106 7.19858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.769 3.231 4 C -0.054 4.054 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.005 3.995 8 C 0.024 3.976 9 C -0.110 4.110 10 C -0.050 4.050 11 C -0.179 4.179 12 C 0.557 3.443 13 O -0.562 6.562 14 N -0.708 5.708 15 C 0.144 3.856 16 H 0.072 0.928 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.079 3.921 20 H 0.097 0.903 21 O -0.375 6.375 22 C 0.596 3.404 23 F -0.177 7.177 24 F -0.150 7.150 25 F -0.174 7.174 26 C -0.142 4.142 27 C -0.121 4.121 28 C 0.159 3.841 29 O -0.496 6.496 30 C -0.154 4.154 31 O -0.175 6.175 32 H 0.399 0.601 33 H 0.138 0.862 34 H -0.298 1.298 35 H -0.277 1.277 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.416 0.584 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.052 0.948 49 H 0.409 0.591 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -6.365 1.069 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.674 3.326 4 C -0.104 4.104 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.024 3.976 9 C -0.128 4.128 10 C -0.068 4.068 11 C -0.183 4.183 12 C 0.345 3.655 13 O -0.441 6.441 14 N -0.361 5.361 15 C 0.039 3.961 16 H 0.090 0.910 17 C -0.150 4.150 18 C -0.146 4.146 19 C 0.024 3.976 20 H 0.115 0.885 21 O -0.299 6.299 22 C 0.504 3.496 23 F -0.159 7.159 24 F -0.131 7.131 25 F -0.156 7.156 26 C -0.180 4.180 27 C -0.159 4.159 28 C 0.113 3.887 29 O -0.309 6.309 30 C -0.172 4.172 31 O -0.072 6.072 32 H 0.250 0.750 33 H 0.155 0.845 34 H -0.226 1.226 35 H -0.203 1.203 36 H 0.183 0.817 37 H 0.200 0.800 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.255 0.745 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.269 0.731 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.151 -5.070 0.182 7.230 hybrid contribution 0.264 -0.485 -0.277 0.618 sum -4.886 -5.556 -0.095 7.399 Atomic orbital electron populations 1.86532 1.15835 1.82075 1.50354 1.24393 0.85442 1.10808 0.92769 0.93384 0.78016 0.75868 0.85338 1.23221 1.00527 0.94355 0.92296 1.21834 1.04172 0.95757 0.98514 1.22240 1.00885 0.98958 0.97054 1.20603 1.04525 0.87943 0.91326 1.17957 0.95509 0.93971 0.90201 1.21062 0.99381 0.99290 0.93084 1.21183 0.93631 0.95192 0.96833 1.20541 1.05535 0.96083 0.96104 1.18225 0.79253 0.84447 0.83588 1.90833 1.51791 1.25571 1.75946 1.45791 1.56840 1.12410 1.21026 1.21036 0.90430 1.00672 0.83958 0.90980 1.21741 1.01535 0.99171 0.92587 1.21562 0.89389 1.04736 0.98890 1.22865 0.93151 1.00420 0.81204 0.88462 1.88375 1.29752 1.68571 1.43200 1.19556 0.80319 0.75466 0.74268 1.93264 1.74014 1.90014 1.58609 1.93265 1.81734 1.93962 1.44157 1.93260 1.94141 1.32404 1.95799 1.22108 1.01154 0.99776 0.94994 1.21807 0.94659 1.03056 0.96410 1.18502 0.92218 0.85804 0.92169 1.84734 1.45708 1.23642 1.76835 1.21582 0.99510 0.98130 0.97988 1.83920 1.57940 1.38564 1.26809 0.74979 0.84500 1.22566 1.20322 0.81715 0.80038 0.81355 0.80805 0.74537 0.88375 0.88438 0.90552 0.88631 0.91048 0.90855 0.89668 0.92888 0.73115 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.20 12.88 -148.98 -1.92 -0.72 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.78 32.11 68.60 2.20 1.42 16 4 C -0.05 -0.02 6.21 24.90 0.15 0.13 16 5 C -0.18 0.13 10.78 22.11 0.24 0.36 16 6 C -0.17 0.40 10.26 22.40 0.23 0.63 16 7 C 0.01 0.00 7.02 24.24 0.17 0.17 16 8 C 0.02 -0.02 5.87 -20.08 -0.12 -0.14 16 9 C -0.11 0.72 9.48 22.25 0.21 0.93 16 10 C -0.05 0.36 9.47 22.24 0.21 0.57 16 11 C -0.18 -0.06 5.89 -19.97 -0.12 -0.17 16 12 C 0.56 1.63 7.72 86.63 0.67 2.30 16 13 O -0.56 -6.70 14.80 16.87 0.25 -6.45 16 14 N -0.71 3.59 5.02 -445.92 -2.24 1.35 16 15 C 0.14 -0.60 2.45 44.99 0.11 -0.49 16 16 H 0.07 0.08 7.58 -2.38 -0.02 0.06 16 17 C -0.11 1.15 5.39 30.59 0.16 1.31 16 18 C -0.11 0.75 5.57 30.60 0.17 0.92 16 19 C 0.08 -0.27 2.40 30.59 0.07 -0.20 16 20 H 0.10 -0.59 7.20 -2.39 -0.02 -0.61 16 21 O -0.37 -0.49 10.24 -148.98 -1.52 -2.01 16 22 C 0.60 1.21 3.71 113.37 0.42 1.63 16 23 F -0.18 -0.47 15.44 44.97 0.69 0.22 16 24 F -0.15 -0.65 17.53 44.97 0.79 0.14 16 25 F -0.17 -0.20 16.61 44.97 0.75 0.54 16 26 C -0.14 0.19 5.39 30.59 0.16 0.36 16 27 C -0.12 0.27 5.49 30.60 0.17 0.44 16 28 C 0.16 0.60 6.71 22.80 0.15 0.75 16 29 O -0.50 -3.24 11.56 -68.98 -0.80 -4.04 16 30 C -0.15 -0.31 9.65 22.61 0.22 -0.09 16 31 O -0.17 -0.42 8.79 -5.92 -0.05 -0.47 16 32 H 0.40 -3.93 8.70 -74.06 -0.64 -4.57 16 33 H 0.14 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H -0.30 -1.97 7.11 99.48 0.71 -1.27 16 35 H -0.28 -1.14 7.11 99.48 0.71 -0.43 16 36 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 37 H 0.18 -1.56 7.24 -2.91 -0.02 -1.58 16 38 H 0.17 -2.14 6.95 -2.91 -0.02 -2.16 16 39 H 0.17 -2.71 6.38 -2.91 -0.02 -2.73 16 40 H 0.42 -5.17 6.61 -92.71 -0.61 -5.79 16 41 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.10 -1.36 8.14 -2.39 -0.02 -1.38 16 43 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.07 0.01 6.50 -2.39 -0.02 0.00 16 47 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.41 -0.31 9.06 -74.06 -0.67 -0.98 16 50 H 0.14 0.27 7.90 -2.91 -0.02 0.25 16 Total: 0.00 -25.97 428.78 0.83 -25.15 By element: Atomic # 1 Polarization: -23.99 SS G_CDS: -0.83 Total: -24.82 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 3.50 Total: 9.68 kcal Atomic # 7 Polarization: 3.59 SS G_CDS: -2.24 Total: 1.35 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -4.04 Total: -13.68 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 2.23 Total: 0.90 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.20 Total: 1.42 kcal Total: -25.97 0.83 -25.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.922 kcal (2) G-P(sol) polarization free energy of solvation -25.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds