Wall clock time and date at job start Sun Mar 7 2021 15:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47091 * 2 1 4 4 C 1.50700 * 109.47110 * 120.00137 * 2 1 3 5 5 C 1.38339 * 119.87045 * 64.99992 * 4 2 1 6 6 C 1.38002 * 120.12131 * 179.97438 * 5 4 2 7 7 C 1.39398 * 119.87474 * 0.02562 * 6 5 4 8 8 C 1.48279 * 120.12599 * 180.02562 * 7 6 5 9 9 C 1.39499 * 119.97522 * 180.02562 * 8 7 6 10 10 C 1.37674 * 120.02500 * 179.97438 * 9 8 7 11 11 C 1.39704 * 119.97277 * 0.02562 * 10 9 8 12 12 C 1.47718 * 120.02125 * 180.02562 * 11 10 9 13 13 O 1.21569 * 120.00479 * 0.26677 * 12 11 10 14 14 N 1.34784 * 119.99792 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 H 1.09007 * 109.46956 * 325.00197 * 15 14 12 17 17 C 1.52995 * 109.47022 * 84.99732 * 15 14 12 18 18 C 1.53005 * 109.47228 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47076 * 300.00529 * 18 17 15 20 20 H 1.08996 * 109.46825 * 299.99460 * 19 18 17 21 21 O 1.42902 * 109.47167 * 179.97438 * 19 18 17 22 22 C 1.42900 * 113.99682 * 89.99490 * 21 19 18 23 23 F 1.39903 * 109.47057 * 60.00516 * 22 21 19 24 24 F 1.39905 * 109.46779 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47714 * 299.99956 * 22 21 19 26 26 C 1.52996 * 109.47151 * 59.99647 * 19 18 17 27 27 C 1.52999 * 109.47155 * 205.00183 * 15 14 12 28 28 C 1.39704 * 119.95387 * 0.26529 * 11 10 9 29 29 C 1.37669 * 119.97454 * 359.43119 * 28 11 10 30 30 C 1.39399 * 119.74785 * 0.27161 * 7 6 5 31 31 C 1.38004 * 119.86926 * 359.47047 * 30 7 6 32 32 H 0.96699 * 113.99957 * 299.99403 * 1 2 3 33 33 H 1.08998 * 109.46825 * 239.99741 * 2 1 3 34 34 H 1.48495 * 110.00015 * 178.67960 * 3 2 1 35 35 H 1.48501 * 109.99952 * 300.00214 * 3 2 1 36 36 H 1.07993 * 119.93746 * 359.97438 * 5 4 2 37 37 H 1.08007 * 120.05735 * 179.97438 * 6 5 4 38 38 H 1.08001 * 119.99018 * 0.02562 * 9 8 7 39 39 H 1.07994 * 120.01191 * 180.02562 * 10 9 8 40 40 H 0.96999 * 120.00044 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47831 * 300.00098 * 17 15 14 42 42 H 1.08996 * 109.47227 * 60.00172 * 17 15 14 43 43 H 1.08996 * 109.47630 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46829 * 60.00417 * 18 17 15 45 45 H 1.09006 * 109.46787 * 180.02562 * 26 19 18 46 46 H 1.09003 * 109.47095 * 60.00411 * 26 19 18 47 47 H 1.08996 * 109.46825 * 299.99663 * 27 15 14 48 48 H 1.08993 * 109.47204 * 60.00070 * 27 15 14 49 49 H 1.08001 * 120.01481 * 179.72546 * 28 11 10 50 50 H 1.07997 * 119.98866 * 180.29261 * 29 28 11 51 51 H 1.08004 * 120.06660 * 179.72256 * 30 7 6 52 52 H 1.07997 * 119.93840 * 180.24682 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6830 -2.0613 1.3957 6 6 2.1411 -2.7171 2.5202 7 6 2.8547 -2.0157 3.4908 8 6 3.3499 -2.7150 4.7009 9 6 4.0633 -2.0099 5.6704 10 6 4.5231 -2.6580 6.7946 11 6 4.2755 -4.0224 6.9640 12 6 4.7679 -4.7188 8.1701 13 8 5.3846 -4.1036 9.0181 14 7 4.5284 -6.0351 8.3333 15 6 5.0172 -6.7258 9.5292 16 1 5.9771 -6.3032 9.8260 17 6 4.0093 -6.5509 10.6669 18 6 4.5195 -7.2729 11.9157 19 6 4.6901 -8.7622 11.6098 20 1 3.7300 -9.1844 11.3129 21 8 5.1671 -9.4364 12.7760 22 6 4.1305 -9.9289 13.6275 23 9 3.3385 -10.8392 12.9194 24 9 4.7002 -10.5690 14.7334 25 9 3.3381 -8.8615 14.0630 26 6 5.6979 -8.9371 10.4721 27 6 5.1882 -8.2152 9.2237 28 6 3.5663 -4.7289 5.9895 29 6 3.1020 -4.0775 4.8691 30 6 3.0965 -0.6533 3.3218 31 6 2.6382 -0.0090 2.1906 32 1 -0.3933 0.4416 0.7651 33 1 1.7923 -0.5139 -0.8900 34 1 3.5345 1.7703 0.0322 35 1 1.5614 2.4679 -1.2085 36 1 1.1297 -2.6035 0.6434 37 1 1.9462 -3.7717 2.6484 38 1 4.2542 -0.9550 5.5395 39 1 5.0750 -2.1118 7.5453 40 1 4.0323 -6.5250 7.6589 41 1 3.8874 -5.4898 10.8845 42 1 3.0494 -6.9735 10.3701 43 1 3.8013 -7.1487 12.7261 44 1 5.4796 -6.8506 12.2127 45 1 5.8191 -9.9982 10.2539 46 1 6.6580 -8.5149 10.7691 47 1 4.2283 -8.6378 8.9270 48 1 5.9062 -8.3398 8.4133 49 1 3.3782 -5.7847 6.1174 50 1 2.5496 -4.6224 4.1179 51 1 3.6450 -0.1039 4.0726 52 1 2.8284 1.0456 2.0567 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:01:46 Heat of formation + Delta-G solvation = -223.710862 kcal Electronic energy + Delta-G solvation = -38962.726318 eV Core-core repulsion = 33249.809138 eV Total energy + Delta-G solvation = -5712.917180 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.154 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -51.26008 -49.01437 -48.94310 -41.59724 -40.89455 -40.25465 -39.25008 -37.93470 -37.48300 -35.06695 -33.94424 -32.58440 -31.99286 -31.59945 -31.12250 -29.71291 -27.02417 -26.31455 -24.66635 -24.64605 -23.97002 -23.37414 -22.57741 -22.13412 -21.49674 -21.13204 -20.44534 -19.97063 -19.75153 -19.19461 -18.42310 -17.75242 -17.55903 -16.95616 -16.75094 -16.35337 -16.29064 -16.08966 -15.98418 -15.87941 -15.73687 -15.55305 -15.40942 -15.38240 -15.36872 -15.15085 -15.09751 -15.03006 -14.95782 -14.86007 -14.67173 -14.35467 -14.29297 -14.18997 -14.05124 -13.90216 -13.57653 -13.35042 -13.21185 -12.99299 -12.77518 -12.72236 -12.53347 -12.26327 -12.12339 -12.11092 -11.93367 -11.61798 -11.59405 -11.25741 -11.06171 -10.75821 -10.41476 -10.16565 -10.05028 -9.95231 -9.06738 -5.01431 -0.68090 0.36212 0.40942 0.50945 0.80386 1.30405 1.62180 1.79776 1.95594 1.95678 2.09472 2.61655 2.93997 3.02098 3.04011 3.40417 3.47003 3.50644 3.54611 3.63873 3.67345 3.78093 3.81811 3.88234 3.89322 3.95799 4.02000 4.05989 4.07314 4.22963 4.27883 4.29676 4.35435 4.37810 4.44311 4.47879 4.61870 4.65806 4.68960 4.74549 4.89545 4.92563 4.94767 5.01828 5.03712 5.05907 5.09368 5.14778 5.18225 5.21691 5.28109 5.34910 5.42461 5.43296 5.50569 5.66237 5.80946 5.93751 6.46208 6.75700 7.13829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.770 3.230 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.123 4.123 10 C -0.071 4.071 11 C -0.152 4.152 12 C 0.557 3.443 13 O -0.579 6.579 14 N -0.707 5.707 15 C 0.141 3.859 16 H 0.071 0.929 17 C -0.120 4.120 18 C -0.142 4.142 19 C 0.079 3.921 20 H 0.098 0.902 21 O -0.375 6.375 22 C 0.596 3.404 23 F -0.174 7.174 24 F -0.150 7.150 25 F -0.176 7.176 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.073 4.073 29 C -0.121 4.121 30 C -0.107 4.107 31 C -0.119 4.119 32 H 0.395 0.605 33 H 0.107 0.893 34 H -0.287 1.287 35 H -0.301 1.301 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.127 0.873 40 H 0.416 0.584 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.160 0.840 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -1.575 -3.489 4.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.677 3.323 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.024 4.024 9 C -0.141 4.141 10 C -0.090 4.090 11 C -0.155 4.155 12 C 0.346 3.654 13 O -0.460 6.460 14 N -0.359 5.359 15 C 0.037 3.963 16 H 0.089 0.911 17 C -0.158 4.158 18 C -0.180 4.180 19 C 0.024 3.976 20 H 0.116 0.884 21 O -0.299 6.299 22 C 0.504 3.496 23 F -0.156 7.156 24 F -0.131 7.131 25 F -0.158 7.158 26 C -0.146 4.146 27 C -0.151 4.151 28 C -0.092 4.092 29 C -0.139 4.139 30 C -0.125 4.125 31 C -0.136 4.136 32 H 0.245 0.755 33 H 0.124 0.876 34 H -0.214 1.214 35 H -0.229 1.229 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.255 0.745 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.177 0.823 50 H 0.173 0.827 51 H 0.164 0.836 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.890 -0.930 -3.789 4.335 hybrid contribution -0.207 -0.578 -0.056 0.617 sum -2.097 -1.508 -3.845 4.632 Atomic orbital electron populations 1.86474 1.17159 1.82157 1.50516 1.25145 0.85323 1.10570 0.97284 0.93783 0.77904 0.75657 0.84939 1.20527 0.99388 0.95219 0.96867 1.21108 0.99030 0.93993 0.97953 1.21518 0.96884 1.01015 0.93109 1.18942 0.99184 0.93871 0.94002 1.19150 0.96080 0.93994 0.93128 1.21385 0.98276 1.01262 0.93133 1.21264 0.96948 0.93524 0.97311 1.20001 1.04340 0.95142 0.96024 1.18549 0.78572 0.82480 0.85805 1.90782 1.42751 1.67018 1.45457 1.45820 1.57460 1.08603 1.24018 1.21071 0.97507 0.93256 0.84494 0.91058 1.21797 0.99662 1.00510 0.93867 1.22111 1.03079 0.93917 0.98902 1.22852 1.00340 0.91811 0.82618 0.88441 1.88376 1.30532 1.74167 1.36827 1.19550 0.76613 0.75418 0.78001 1.93261 1.75351 1.68274 1.78739 1.93268 1.85486 1.81689 1.52673 1.93261 1.75428 1.56925 1.90219 1.21546 0.98154 1.03054 0.91828 1.21731 1.04378 0.91401 0.97603 1.21481 0.94632 1.00908 0.92141 1.21477 1.00349 0.93488 0.98538 1.21493 0.99264 0.93734 0.98007 1.21135 0.98400 1.00182 0.93874 0.75479 0.87600 1.21393 1.22946 0.85110 0.83592 0.83481 0.85513 0.74534 0.92571 0.89610 0.90637 0.91027 0.88660 0.90570 0.88460 0.88635 0.82255 0.82709 0.83574 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.47 12.83 -148.98 -1.91 -1.44 16 2 C -0.07 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.77 -2.17 29.79 68.60 2.04 -0.13 16 4 C -0.12 0.19 5.36 -19.82 -0.11 0.09 16 5 C -0.10 0.14 9.67 22.24 0.21 0.35 16 6 C -0.11 0.28 9.43 22.49 0.21 0.49 16 7 C -0.06 0.10 5.88 -20.05 -0.12 -0.02 16 8 C -0.02 0.04 5.88 -20.00 -0.12 -0.08 16 9 C -0.12 0.09 9.41 22.44 0.21 0.30 16 10 C -0.07 -0.17 9.58 22.49 0.22 0.04 16 11 C -0.15 -0.14 5.88 -20.06 -0.12 -0.26 16 12 C 0.56 2.08 7.73 86.75 0.67 2.75 16 13 O -0.58 -7.35 16.00 -3.93 -0.06 -7.41 16 14 N -0.71 2.76 5.03 -445.52 -2.24 0.52 16 15 C 0.14 -0.48 2.45 44.99 0.11 -0.37 16 16 H 0.07 0.15 7.58 -2.38 -0.02 0.13 16 17 C -0.12 0.28 5.49 30.59 0.17 0.45 16 18 C -0.14 0.22 5.39 30.60 0.17 0.38 16 19 C 0.08 -0.26 2.40 30.59 0.07 -0.19 16 20 H 0.10 -0.58 7.20 -2.39 -0.02 -0.59 16 21 O -0.37 -0.51 10.24 -148.98 -1.52 -2.04 16 22 C 0.60 1.16 3.71 113.37 0.42 1.58 16 23 F -0.17 -0.21 16.61 44.97 0.75 0.54 16 24 F -0.15 -0.64 17.53 44.97 0.79 0.15 16 25 F -0.18 -0.42 15.44 44.97 0.69 0.27 16 26 C -0.11 0.69 5.57 30.58 0.17 0.86 16 27 C -0.11 1.04 5.39 30.58 0.16 1.21 16 28 C -0.07 0.37 9.52 22.49 0.21 0.59 16 29 C -0.12 0.56 9.41 22.44 0.21 0.77 16 30 C -0.11 0.29 9.43 22.49 0.21 0.50 16 31 C -0.12 0.37 8.65 22.24 0.19 0.56 16 32 H 0.40 -3.47 8.70 -74.06 -0.64 -4.12 16 33 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H -0.29 -0.60 7.11 99.48 0.71 0.10 16 35 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 36 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.15 -1.03 6.19 -2.91 -0.02 -1.05 16 38 H 0.15 -0.66 6.19 -2.91 -0.02 -0.68 16 39 H 0.13 0.53 7.64 -2.91 -0.02 0.51 16 40 H 0.42 -4.48 6.62 -92.71 -0.61 -5.09 16 41 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.08 -0.03 6.50 -2.39 -0.02 -0.04 16 44 H 0.07 0.05 8.14 -2.38 -0.02 0.04 16 45 H 0.09 -0.76 8.14 -2.38 -0.02 -0.77 16 46 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 48 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.16 -1.98 6.39 -2.91 -0.02 -1.99 16 50 H 0.16 -1.46 6.19 -2.91 -0.02 -1.48 16 51 H 0.15 -0.94 6.19 -2.91 -0.02 -0.96 16 52 H 0.15 -1.04 4.89 -2.91 -0.01 -1.05 16 Total: 0.00 -22.18 429.99 1.70 -20.48 By element: Atomic # 1 Polarization: -21.07 SS G_CDS: -0.20 Total: -21.27 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 3.37 Total: 10.33 kcal Atomic # 7 Polarization: 2.76 SS G_CDS: -2.24 Total: 0.52 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -3.50 Total: -10.89 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 2.23 Total: 0.96 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.04 Total: -0.13 kcal Total: -22.18 1.70 -20.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.229 kcal (2) G-P(sol) polarization free energy of solvation -22.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds