Wall clock time and date at job start Sun Mar 7 2021 15:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.46824 * 2 1 4 4 C 1.50699 * 109.47430 * 239.99910 * 2 1 3 5 5 C 1.38581 * 120.32170 * 299.72368 * 4 2 1 6 6 C 1.38637 * 118.48554 * 180.25099 * 5 4 2 7 7 C 1.39266 * 119.06238 * 0.04323 * 6 5 4 8 8 C 1.48164 * 119.72594 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99713 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00155 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99703 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47310 * 324.99505 * 11 10 8 13 13 C 1.53002 * 109.47207 * 84.99820 * 11 10 8 14 14 C 1.53003 * 109.46821 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47333 * 300.00227 * 14 13 11 16 16 H 1.09009 * 109.46996 * 299.99790 * 15 14 13 17 17 O 1.42903 * 109.47135 * 180.02562 * 15 14 13 18 18 C 1.42896 * 114.00058 * 89.99577 * 17 15 14 19 19 F 1.39897 * 109.47249 * 60.00245 * 18 17 15 20 20 F 1.39901 * 109.46930 * 180.02562 * 18 17 15 21 21 F 1.39894 * 109.47536 * 299.99912 * 18 17 15 22 22 C 1.52993 * 109.47317 * 59.99963 * 15 14 13 23 23 C 1.52998 * 109.47348 * 299.99971 * 22 15 14 24 24 N 1.32747 * 120.55287 * 359.95519 * 7 6 5 25 25 C 1.31491 * 121.64663 * 0.02562 * 24 7 6 26 26 H 0.96707 * 113.99884 * 60.00171 * 1 2 3 27 27 H 1.08995 * 109.46894 * 120.00043 * 2 1 3 28 28 H 1.48493 * 110.00260 * 298.67968 * 3 2 1 29 29 H 1.48502 * 110.00129 * 59.99833 * 3 2 1 30 30 H 1.07998 * 120.76266 * 0.25543 * 5 4 2 31 31 H 1.07996 * 120.46949 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00493 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47256 * 299.99999 * 13 11 10 34 34 H 1.09004 * 109.46901 * 59.99902 * 13 11 10 35 35 H 1.09001 * 109.46498 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.46658 * 60.00354 * 14 13 11 37 37 H 1.08999 * 109.47221 * 179.97438 * 22 15 14 38 38 H 1.09009 * 109.47229 * 59.99969 * 22 15 14 39 39 H 1.09004 * 109.47049 * 299.99710 * 23 22 15 40 40 H 1.09004 * 109.47307 * 180.02562 * 23 22 15 41 41 H 1.08000 * 119.55583 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6055 -2.0387 -1.4535 6 6 2.0926 -2.6564 -2.5951 7 6 2.8888 -1.9248 -3.4727 8 6 3.4177 -2.5704 -4.6969 9 8 3.1565 -3.7338 -4.9314 10 7 4.1884 -1.8675 -5.5503 11 6 4.7108 -2.5058 -6.7611 12 1 4.9391 -3.5507 -6.5513 13 6 3.6625 -2.4260 -7.8727 14 6 4.2084 -3.0921 -9.1373 15 6 5.4818 -2.3713 -9.5843 16 1 5.2532 -1.3263 -9.7939 17 8 5.9913 -2.9932 -10.7658 18 6 5.4831 -2.4377 -11.9803 19 9 5.8198 -1.0816 -12.0496 20 9 6.0405 -3.1133 -13.0712 21 9 4.0912 -2.5746 -12.0093 22 6 6.5300 -2.4512 -8.4728 23 6 5.9842 -1.7850 -7.2082 24 7 3.1776 -0.6536 -3.2218 25 6 2.7287 -0.0433 -2.1471 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8899 28 1 1.5879 2.4586 -1.2242 29 1 1.5613 2.4679 1.2085 30 1 0.9861 -2.5805 -0.7540 31 1 1.8581 -3.6903 -2.8008 32 1 4.3966 -0.9388 -5.3634 33 1 2.7552 -2.9391 -7.5540 34 1 3.4343 -1.3809 -8.0825 35 1 3.4617 -3.0348 -9.9293 36 1 4.4369 -4.1370 -8.9277 37 1 7.4373 -1.9381 -8.7915 38 1 6.7586 -3.4962 -8.2632 39 1 5.7557 -0.7400 -7.4177 40 1 6.7312 -1.8415 -6.4164 41 1 2.9843 0.9921 -1.9766 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17849236_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:02:09 Heat of formation + Delta-G solvation = -241.352551 kcal Electronic energy + Delta-G solvation = -30275.978626 eV Core-core repulsion = 25320.850334 eV Total energy + Delta-G solvation = -4955.128292 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.17062 -48.90530 -48.86372 -41.96908 -40.96581 -39.92897 -38.20728 -37.87488 -35.02356 -33.80203 -33.04735 -32.12249 -30.24633 -27.80166 -26.28216 -25.11133 -24.37154 -24.06664 -23.19653 -21.69543 -21.52208 -20.41443 -19.89078 -19.72151 -19.20570 -18.78214 -17.97063 -17.26453 -16.83910 -16.69871 -16.48954 -16.30646 -16.16764 -15.99333 -15.64683 -15.61638 -15.47714 -15.27495 -15.18270 -15.05880 -15.00983 -14.79537 -14.50691 -14.44660 -14.33720 -14.28907 -13.93927 -13.56389 -13.48056 -13.11604 -12.82798 -12.76345 -12.39686 -12.22976 -12.18141 -11.74061 -11.38288 -11.27732 -11.17448 -10.83065 -10.69559 -10.40047 -10.12367 -5.14636 -0.63162 -0.00254 0.84059 1.04377 1.41356 1.57761 1.80251 1.88506 2.07686 2.63762 2.87273 2.99848 3.09219 3.11532 3.35954 3.36440 3.40921 3.55797 3.65083 3.71036 3.76159 3.85423 3.88290 3.91530 4.06870 4.11929 4.20984 4.29594 4.34413 4.47540 4.49273 4.63201 4.77390 4.78189 4.87749 4.89299 4.92600 4.99423 5.06283 5.26162 5.29069 5.36896 6.15795 6.26267 6.56477 7.07631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.074 4.074 3 Si 0.685 3.315 4 C -0.148 4.148 5 C -0.053 4.053 6 C -0.108 4.108 7 C 0.080 3.920 8 C 0.574 3.426 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.140 3.860 12 H 0.096 0.904 13 C -0.127 4.127 14 C -0.145 4.145 15 C 0.083 3.917 16 H 0.084 0.916 17 O -0.366 6.366 18 C 0.594 3.406 19 F -0.176 7.176 20 F -0.142 7.142 21 F -0.174 7.174 22 C -0.110 4.110 23 C -0.123 4.123 24 N -0.453 5.453 25 C 0.104 3.896 26 H 0.378 0.622 27 H 0.126 0.874 28 H -0.255 1.255 29 H -0.251 1.251 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 3.465 3.161 5.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.184 4.184 3 Si 0.585 3.415 4 C -0.151 4.151 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.058 4.058 8 C 0.359 3.641 9 O -0.402 6.402 10 N -0.358 5.358 11 C 0.035 3.965 12 H 0.114 0.886 13 C -0.165 4.165 14 C -0.183 4.183 15 C 0.027 3.973 16 H 0.102 0.898 17 O -0.290 6.290 18 C 0.502 3.498 19 F -0.158 7.158 20 F -0.123 7.123 21 F -0.157 7.157 22 C -0.148 4.148 23 C -0.161 4.161 24 N -0.164 5.164 25 C -0.056 4.056 26 H 0.226 0.774 27 H 0.144 0.856 28 H -0.179 1.179 29 H -0.176 1.176 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.249 0.751 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.342 3.444 2.882 5.065 hybrid contribution -1.740 0.013 -0.089 1.742 sum 0.602 3.458 2.792 4.485 Atomic orbital electron populations 1.86640 1.17193 1.79957 1.49416 1.25025 0.84295 1.11341 0.97768 0.95042 0.91419 0.73959 0.81048 1.21602 0.99208 0.95945 0.98319 1.21567 0.96379 0.93617 0.96317 1.22234 0.95234 1.02133 0.93247 1.21158 0.97971 0.90684 0.96009 1.17853 0.78546 0.85633 0.82097 1.90826 1.58282 1.15977 1.75090 1.45858 1.51197 1.16236 1.22553 1.21139 0.92832 0.98853 0.83644 0.88574 1.21888 0.99259 1.01712 0.93673 1.22166 0.96256 1.01359 0.98497 1.22665 0.95182 0.97090 0.82353 0.89802 1.88362 1.67825 1.59793 1.13043 1.19571 0.74685 0.74615 0.80917 1.93262 1.92223 1.34131 1.96163 1.93288 1.85638 1.80567 1.52811 1.93263 1.30643 1.95477 1.96282 1.21536 0.97564 1.03487 0.92177 1.21778 0.96794 1.00155 0.97395 1.67517 1.20401 1.09040 1.19449 1.22626 0.93965 0.99790 0.89199 0.77412 0.85649 1.17943 1.17570 0.83428 0.82962 0.75143 0.90215 0.91160 0.90055 0.89797 0.89695 0.89719 0.90544 0.89590 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.43 12.78 -35.23 -0.45 -0.02 16 2 C -0.07 0.18 2.83 36.01 0.10 0.28 16 3 Si 0.69 -2.09 29.82 -169.99 -5.07 -7.16 16 4 C -0.15 0.26 5.40 -104.36 -0.56 -0.31 16 5 C -0.05 0.06 9.77 -39.31 -0.38 -0.32 16 6 C -0.11 -0.02 9.63 -39.05 -0.38 -0.40 16 7 C 0.08 0.08 6.75 -83.01 -0.56 -0.48 16 8 C 0.57 1.04 7.78 -12.18 -0.09 0.95 16 9 O -0.53 -2.48 15.99 5.35 0.09 -2.39 16 10 N -0.71 0.52 5.07 -54.65 -0.28 0.24 16 11 C 0.14 -0.19 2.46 -67.92 -0.17 -0.36 16 12 H 0.10 0.01 7.58 -51.93 -0.39 -0.38 16 13 C -0.13 0.15 5.50 -26.73 -0.15 0.00 16 14 C -0.14 0.15 5.39 -26.73 -0.14 0.01 16 15 C 0.08 -0.11 2.40 -26.74 -0.06 -0.17 16 16 H 0.08 -0.17 7.20 -51.92 -0.37 -0.54 16 17 O -0.37 -0.27 10.24 -35.23 -0.36 -0.64 16 18 C 0.59 0.64 3.71 101.05 0.37 1.02 16 19 F -0.18 -0.18 16.61 2.25 0.04 -0.15 16 20 F -0.14 -0.29 17.53 2.25 0.04 -0.25 16 21 F -0.17 -0.21 15.44 2.25 0.03 -0.17 16 22 C -0.11 0.29 5.57 -26.74 -0.15 0.14 16 23 C -0.12 0.42 5.39 -26.73 -0.14 0.27 16 24 N -0.45 -0.01 9.54 -9.80 -0.09 -0.10 16 25 C 0.10 -0.16 9.84 -17.56 -0.17 -0.33 16 26 H 0.38 -1.33 8.70 45.56 0.40 -0.94 16 27 H 0.13 -0.41 7.96 -51.93 -0.41 -0.83 16 28 H -0.25 0.31 7.11 56.52 0.40 0.71 16 29 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 30 H 0.15 -0.35 8.06 -52.49 -0.42 -0.77 16 31 H 0.15 -0.01 7.64 -52.49 -0.40 -0.41 16 32 H 0.41 -0.89 7.93 -40.82 -0.32 -1.21 16 33 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.08 -0.04 6.50 -51.93 -0.34 -0.38 16 36 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 38 H 0.08 -0.19 8.14 -51.92 -0.42 -0.62 16 39 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 40 H 0.09 -0.32 8.14 -51.93 -0.42 -0.75 16 41 H 0.16 -0.62 4.89 -52.49 -0.26 -0.88 16 LS Contribution 353.10 15.07 5.32 5.32 Total: 0.00 -6.67 353.10 -7.90 -14.57 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -4.68 Total: -9.55 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.49 Total: 0.30 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.37 Total: 0.14 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: -0.73 Total: -3.05 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.11 Total: -0.57 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: -5.07 Total: -7.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -6.67 -7.90 -14.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.782 kcal (2) G-P(sol) polarization free energy of solvation -6.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds