Wall clock time and date at job start Sun Mar 7 2021 15:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.46824 * 2 1 4 4 C 1.50699 * 109.47430 * 239.99910 * 2 1 3 5 5 C 1.38581 * 120.32170 * 299.72368 * 4 2 1 6 6 C 1.38637 * 118.48554 * 180.25099 * 5 4 2 7 7 C 1.39266 * 119.06238 * 0.04323 * 6 5 4 8 8 C 1.48164 * 119.72594 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99713 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00155 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99703 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47310 * 324.99505 * 11 10 8 13 13 C 1.53002 * 109.47207 * 84.99820 * 11 10 8 14 14 C 1.53003 * 109.46821 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47333 * 300.00227 * 14 13 11 16 16 H 1.09009 * 109.46996 * 299.99790 * 15 14 13 17 17 O 1.42903 * 109.47135 * 180.02562 * 15 14 13 18 18 C 1.42896 * 114.00058 * 89.99577 * 17 15 14 19 19 F 1.39897 * 109.47249 * 60.00245 * 18 17 15 20 20 F 1.39901 * 109.46930 * 180.02562 * 18 17 15 21 21 F 1.39894 * 109.47536 * 299.99912 * 18 17 15 22 22 C 1.52993 * 109.47317 * 59.99963 * 15 14 13 23 23 C 1.52998 * 109.47348 * 299.99971 * 22 15 14 24 24 N 1.32747 * 120.55287 * 359.95519 * 7 6 5 25 25 C 1.31491 * 121.64663 * 0.02562 * 24 7 6 26 26 H 0.96707 * 113.99884 * 60.00171 * 1 2 3 27 27 H 1.08995 * 109.46894 * 120.00043 * 2 1 3 28 28 H 1.48493 * 110.00260 * 298.67968 * 3 2 1 29 29 H 1.48502 * 110.00129 * 59.99833 * 3 2 1 30 30 H 1.07998 * 120.76266 * 0.25543 * 5 4 2 31 31 H 1.07996 * 120.46949 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00493 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47256 * 299.99999 * 13 11 10 34 34 H 1.09004 * 109.46901 * 59.99902 * 13 11 10 35 35 H 1.09001 * 109.46498 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.46658 * 60.00354 * 14 13 11 37 37 H 1.08999 * 109.47221 * 179.97438 * 22 15 14 38 38 H 1.09009 * 109.47229 * 59.99969 * 22 15 14 39 39 H 1.09004 * 109.47049 * 299.99710 * 23 22 15 40 40 H 1.09004 * 109.47307 * 180.02562 * 23 22 15 41 41 H 1.08000 * 119.55583 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6055 -2.0387 -1.4535 6 6 2.0926 -2.6564 -2.5951 7 6 2.8888 -1.9248 -3.4727 8 6 3.4177 -2.5704 -4.6969 9 8 3.1565 -3.7338 -4.9314 10 7 4.1884 -1.8675 -5.5503 11 6 4.7108 -2.5058 -6.7611 12 1 4.9391 -3.5507 -6.5513 13 6 3.6625 -2.4260 -7.8727 14 6 4.2084 -3.0921 -9.1373 15 6 5.4818 -2.3713 -9.5843 16 1 5.2532 -1.3263 -9.7939 17 8 5.9913 -2.9932 -10.7658 18 6 5.4831 -2.4377 -11.9803 19 9 5.8198 -1.0816 -12.0496 20 9 6.0405 -3.1133 -13.0712 21 9 4.0912 -2.5746 -12.0093 22 6 6.5300 -2.4512 -8.4728 23 6 5.9842 -1.7850 -7.2082 24 7 3.1776 -0.6536 -3.2218 25 6 2.7287 -0.0433 -2.1471 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8899 28 1 1.5879 2.4586 -1.2242 29 1 1.5613 2.4679 1.2085 30 1 0.9861 -2.5805 -0.7540 31 1 1.8581 -3.6903 -2.8008 32 1 4.3966 -0.9388 -5.3634 33 1 2.7552 -2.9391 -7.5540 34 1 3.4343 -1.3809 -8.0825 35 1 3.4617 -3.0348 -9.9293 36 1 4.4369 -4.1370 -8.9277 37 1 7.4373 -1.9381 -8.7915 38 1 6.7586 -3.4962 -8.2632 39 1 5.7557 -0.7400 -7.4177 40 1 6.7312 -1.8415 -6.4164 41 1 2.9843 0.9921 -1.9766 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:02:08 Heat of formation + Delta-G solvation = -240.477352 kcal Electronic energy + Delta-G solvation = -30275.940675 eV Core-core repulsion = 25320.850334 eV Total energy + Delta-G solvation = -4955.090341 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.26227 -49.01555 -48.94539 -41.94659 -40.91215 -39.95968 -38.11839 -37.86698 -35.04605 -33.72864 -32.99266 -31.99204 -30.19451 -27.72019 -26.32985 -25.02914 -24.31321 -23.94283 -23.12196 -21.71953 -21.43349 -20.45200 -19.97196 -19.77212 -19.18061 -18.69022 -17.92309 -17.19193 -16.82031 -16.61874 -16.45593 -16.24376 -16.13677 -16.00914 -15.73885 -15.63880 -15.42905 -15.37275 -15.17785 -15.13359 -15.09581 -14.77046 -14.45181 -14.36159 -14.30982 -14.22975 -13.91035 -13.48639 -13.34968 -13.02850 -12.79244 -12.63714 -12.26549 -12.15162 -12.10949 -11.61689 -11.45851 -11.21580 -11.09598 -10.69993 -10.66469 -10.38240 -10.10024 -4.92048 -0.60082 0.07860 0.80226 1.24722 1.54085 1.60542 1.88837 1.98183 2.04739 2.65935 2.93716 2.94051 3.03838 3.32742 3.46928 3.49899 3.50576 3.64904 3.77434 3.81717 3.88278 3.92996 3.95505 4.06554 4.13013 4.22498 4.35319 4.42763 4.48400 4.60153 4.62341 4.74157 4.86419 4.94450 4.98860 5.02076 5.04129 5.06370 5.17787 5.33722 5.37506 5.41686 6.27124 6.42172 6.61608 7.04405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.079 4.079 3 Si 0.768 3.232 4 C -0.140 4.140 5 C -0.054 4.054 6 C -0.117 4.117 7 C 0.064 3.936 8 C 0.570 3.430 9 O -0.565 6.565 10 N -0.694 5.694 11 C 0.139 3.861 12 H 0.078 0.922 13 C -0.120 4.120 14 C -0.141 4.141 15 C 0.078 3.922 16 H 0.096 0.904 17 O -0.374 6.374 18 C 0.596 3.404 19 F -0.174 7.174 20 F -0.149 7.149 21 F -0.176 7.176 22 C -0.106 4.106 23 C -0.114 4.114 24 N -0.457 5.457 25 C 0.102 3.898 26 H 0.388 0.612 27 H 0.137 0.863 28 H -0.275 1.275 29 H -0.301 1.301 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.421 0.579 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 4.831 3.646 6.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.188 4.188 3 Si 0.672 3.328 4 C -0.143 4.143 5 C -0.079 4.079 6 C -0.138 4.138 7 C -0.073 4.073 8 C 0.355 3.645 9 O -0.444 6.444 10 N -0.345 5.345 11 C 0.035 3.965 12 H 0.096 0.904 13 C -0.159 4.159 14 C -0.179 4.179 15 C 0.023 3.977 16 H 0.114 0.886 17 O -0.298 6.298 18 C 0.504 3.496 19 F -0.157 7.157 20 F -0.131 7.131 21 F -0.159 7.159 22 C -0.144 4.144 23 C -0.151 4.151 24 N -0.169 5.169 25 C -0.058 4.058 26 H 0.238 0.762 27 H 0.154 0.846 28 H -0.201 1.201 29 H -0.229 1.229 30 H 0.177 0.823 31 H 0.165 0.835 32 H 0.259 0.741 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.024 4.816 3.343 6.597 hybrid contribution -2.002 -0.367 -0.179 2.044 sum 1.021 4.449 3.164 5.554 Atomic orbital electron populations 1.86616 1.18019 1.80356 1.50275 1.25234 0.83706 1.12077 0.97827 0.94111 0.90022 0.71509 0.77126 1.21689 0.98595 0.95608 0.98364 1.21722 0.96231 0.94026 0.95957 1.22280 0.95601 1.02108 0.93824 1.21085 0.98889 0.91320 0.96046 1.18086 0.78489 0.85306 0.82618 1.90799 1.59897 1.17596 1.76077 1.45813 1.50087 1.16450 1.22135 1.21163 0.93765 0.98307 0.83258 0.90410 1.21802 0.98427 1.02033 0.93612 1.22104 0.96484 1.01017 0.98307 1.22853 0.95313 0.97439 0.82084 0.88617 1.88372 1.67895 1.60178 1.13343 1.19555 0.74554 0.74586 0.80924 1.93260 1.92210 1.34013 1.96172 1.93267 1.85746 1.80743 1.53325 1.93259 1.30802 1.95495 1.96299 1.21544 0.97525 1.03496 0.91871 1.21733 0.95647 1.00580 0.97171 1.67514 1.20699 1.08528 1.20116 1.23027 0.93479 1.00666 0.88599 0.76229 0.84560 1.20092 1.22906 0.82310 0.83498 0.74088 0.92344 0.89960 0.90607 0.90672 0.88654 0.90262 0.88839 0.88616 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.27 12.78 -148.98 -1.90 -0.63 16 2 C -0.08 0.47 2.83 71.24 0.20 0.67 16 3 Si 0.77 -5.40 29.82 68.60 2.05 -3.35 16 4 C -0.14 0.61 5.40 -19.70 -0.11 0.50 16 5 C -0.05 0.13 9.77 22.45 0.22 0.35 16 6 C -0.12 -0.15 9.63 22.61 0.22 0.07 16 7 C 0.06 0.17 6.75 41.89 0.28 0.45 16 8 C 0.57 2.82 7.78 86.88 0.68 3.49 16 9 O -0.57 -6.61 15.99 -3.76 -0.06 -6.67 16 10 N -0.69 0.74 5.07 -445.09 -2.26 -1.51 16 11 C 0.14 -0.32 2.46 44.99 0.11 -0.21 16 12 H 0.08 0.14 7.58 -2.39 -0.02 0.13 16 13 C -0.12 0.18 5.50 30.60 0.17 0.35 16 14 C -0.14 0.18 5.39 30.59 0.17 0.34 16 15 C 0.08 -0.21 2.40 30.59 0.07 -0.14 16 16 H 0.10 -0.48 7.20 -2.38 -0.02 -0.49 16 17 O -0.37 -0.61 10.24 -148.98 -1.53 -2.13 16 18 C 0.60 1.39 3.71 113.37 0.42 1.81 16 19 F -0.17 -0.31 16.61 44.97 0.75 0.44 16 20 F -0.15 -0.68 17.53 44.97 0.79 0.11 16 21 F -0.18 -0.49 15.44 44.97 0.69 0.21 16 22 C -0.11 0.62 5.57 30.59 0.17 0.79 16 23 C -0.11 0.87 5.39 30.59 0.16 1.04 16 24 N -0.46 0.16 9.54 -184.92 -1.76 -1.60 16 25 C 0.10 -0.42 9.84 84.83 0.83 0.41 16 26 H 0.39 -2.98 8.70 -74.05 -0.64 -3.62 16 27 H 0.14 -1.09 7.96 -2.39 -0.02 -1.11 16 28 H -0.27 1.00 7.11 99.48 0.71 1.70 16 29 H -0.30 -0.47 7.11 99.48 0.71 0.24 16 30 H 0.16 -0.80 8.06 -2.91 -0.02 -0.83 16 31 H 0.15 0.26 7.64 -2.91 -0.02 0.24 16 32 H 0.42 -2.01 7.93 -92.71 -0.74 -2.75 16 33 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.08 -0.01 6.50 -2.39 -0.02 -0.02 16 36 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 39 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 41 H 0.19 -1.77 4.89 -2.91 -0.01 -1.78 16 Total: 0.00 -16.78 353.10 0.13 -16.64 By element: Atomic # 1 Polarization: -11.20 SS G_CDS: -0.23 Total: -11.43 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 3.60 Total: 9.93 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -4.02 Total: -3.11 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -3.49 Total: -9.44 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 2.23 Total: 0.76 kcal Atomic # 14 Polarization: -5.40 SS G_CDS: 2.05 Total: -3.35 kcal Total: -16.78 0.13 -16.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.835 kcal (2) G-P(sol) polarization free energy of solvation -16.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds