Wall clock time and date at job start Sun Mar 7 2021 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47521 * 2 1 4 4 C 1.50696 * 109.47207 * 120.00330 * 2 1 3 5 5 C 1.34857 * 125.89808 * 218.05937 * 4 2 1 6 6 C 1.40942 * 107.46594 * 180.02562 * 5 4 2 7 7 C 1.34847 * 107.46858 * 359.75043 * 6 5 4 8 8 N 1.36563 * 108.20011 * 0.39895 * 7 6 5 9 9 C 1.40209 * 125.67143 * 179.86510 * 8 7 6 10 10 C 1.38829 * 120.06333 * 56.07082 * 9 8 7 11 11 C 1.38116 * 119.93250 * 180.02562 * 10 9 8 12 12 C 1.38284 * 120.06823 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.93674 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47246 * 89.99879 * 13 12 11 15 15 O 1.21283 * 119.99961 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99826 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99706 * 179.97438 * 16 14 13 18 18 H 1.08992 * 109.47001 * 35.00207 * 17 16 14 19 19 C 1.52997 * 109.46699 * 155.00234 * 17 16 14 20 20 C 1.53001 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.46884 * 299.99783 * 20 19 17 22 22 H 1.09005 * 109.47048 * 300.00064 * 21 20 19 23 23 O 1.42896 * 109.47214 * 179.97438 * 21 20 19 24 24 C 1.42905 * 114.00138 * 149.99962 * 23 21 20 25 25 F 1.39895 * 109.46683 * 60.00175 * 24 23 21 26 26 F 1.39898 * 109.47276 * 180.02562 * 24 23 21 27 27 F 1.39905 * 109.46817 * 300.00383 * 24 23 21 28 28 C 1.53000 * 109.46874 * 59.99879 * 21 20 19 29 29 C 1.53001 * 109.47464 * 299.99766 * 28 21 20 30 30 C 1.38275 * 120.12677 * 0.27886 * 12 11 10 31 31 C 1.38122 * 120.06928 * 359.49066 * 30 12 11 32 32 H 0.96696 * 113.99941 * 59.99287 * 1 2 3 33 33 H 1.09009 * 109.47030 * 240.00099 * 2 1 3 34 34 H 1.48503 * 110.00000 * 298.68597 * 3 2 1 35 35 H 1.48500 * 109.99990 * 59.99889 * 3 2 1 36 36 H 1.07998 * 126.26642 * 359.97438 * 5 4 2 37 37 H 1.07997 * 126.26577 * 180.02562 * 6 5 4 38 38 H 1.08001 * 125.90319 * 180.22975 * 7 6 5 39 39 H 1.08003 * 120.03489 * 0.05026 * 10 9 8 40 40 H 1.08004 * 119.96719 * 180.02562 * 11 10 9 41 41 H 1.09008 * 109.46825 * 329.99701 * 13 12 11 42 42 H 1.09001 * 109.46895 * 210.00404 * 13 12 11 43 43 H 0.97001 * 119.99843 * 0.02562 * 16 14 13 44 44 H 1.09000 * 109.47275 * 300.00040 * 19 17 16 45 45 H 1.09002 * 109.47499 * 60.00380 * 19 17 16 46 46 H 1.08996 * 109.47497 * 59.99675 * 20 19 17 47 47 H 1.08998 * 109.47488 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.47049 * 60.00389 * 28 21 20 49 49 H 1.09000 * 109.47075 * 179.97438 * 28 21 20 50 50 H 1.09002 * 109.46834 * 300.00298 * 29 28 21 51 51 H 1.08996 * 109.46982 * 180.02562 * 29 28 21 52 52 H 1.08007 * 119.96629 * 179.74705 * 30 12 11 53 53 H 1.08000 * 120.03699 * 180.26126 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 3.0059 -0.3567 1.9644 6 6 3.1211 -1.2838 3.0197 7 6 2.1096 -2.1668 2.8950 8 7 1.3775 -1.8241 1.7944 9 6 0.2421 -2.4996 1.3249 10 6 -0.8480 -2.6932 2.1625 11 6 -1.9648 -3.3594 1.6974 12 6 -1.9982 -3.8330 0.3986 13 6 -3.2185 -4.5591 -0.1060 14 6 -4.1792 -3.5673 -0.7099 15 8 -3.9002 -2.3872 -0.7290 16 7 -5.3480 -3.9920 -1.2295 17 6 -6.2822 -3.0278 -1.8160 18 1 -5.7222 -2.2317 -2.3064 19 6 -7.1678 -3.7360 -2.8432 20 6 -8.1430 -2.7289 -3.4563 21 6 -9.0190 -2.1311 -2.3534 22 1 -9.5793 -2.9272 -1.8629 23 8 -9.9295 -1.1902 -2.9258 24 6 -11.1687 -1.0788 -2.2229 25 9 -10.9237 -0.6688 -0.9080 26 9 -11.9840 -0.1380 -2.8610 27 9 -11.8117 -2.3213 -2.2118 28 6 -8.1334 -1.4231 -1.3262 29 6 -7.1582 -2.4301 -0.7132 30 6 -0.9119 -3.6463 -0.4363 31 6 0.2059 -2.9766 0.0216 32 1 -0.3933 0.4418 -0.7650 33 1 1.7923 -0.5139 -0.8901 34 1 1.5879 2.4586 -1.2242 35 1 1.5616 2.4678 1.2085 36 1 3.6590 0.4829 1.7774 37 1 3.8781 -1.2841 3.7900 38 1 1.9141 -3.0025 3.5506 39 1 -0.8229 -2.3228 3.1768 40 1 -2.8133 -3.5100 2.3484 41 1 -3.7027 -5.0755 0.7229 42 1 -2.9221 -5.2851 -0.8631 43 1 -5.5710 -4.9359 -1.2145 44 1 -6.5438 -4.1615 -3.6291 45 1 -7.7278 -4.5322 -2.3528 46 1 -7.5828 -1.9330 -3.9468 47 1 -8.7743 -3.2335 -4.1877 48 1 -7.5732 -0.6271 -1.8167 49 1 -8.7575 -0.9968 -0.5408 50 1 -7.7185 -3.2261 -0.2226 51 1 -6.5276 -1.9257 0.0189 52 1 -0.9392 -4.0208 -1.4490 53 1 1.0524 -2.8273 -0.6323 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:02:18 Heat of formation + Delta-G solvation = -193.047909 kcal Electronic energy + Delta-G solvation = -41181.669533 eV Core-core repulsion = 35377.344609 eV Total energy + Delta-G solvation = -5804.324924 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.165 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -51.29672 -49.05134 -48.97944 -42.65197 -41.34047 -40.39924 -39.59615 -37.92366 -37.86487 -34.88929 -34.78852 -32.18261 -32.01535 -31.95395 -31.19259 -30.04065 -27.68254 -26.32996 -26.00539 -24.08895 -23.97799 -23.86900 -22.95536 -21.54913 -21.46223 -21.19229 -20.52076 -20.44533 -20.00727 -19.75239 -18.79294 -18.53485 -18.09324 -17.66835 -17.02894 -16.89246 -16.36460 -16.29478 -16.12417 -15.92459 -15.77170 -15.70206 -15.61237 -15.43532 -15.41826 -15.40223 -15.17431 -15.12610 -14.95266 -14.72066 -14.59339 -14.50043 -14.41678 -14.27506 -14.13530 -13.93276 -13.59882 -13.37020 -13.25722 -13.21037 -13.11933 -12.93961 -12.78835 -12.76160 -12.54556 -12.28318 -12.13683 -12.11837 -12.09606 -11.62691 -11.25181 -10.96969 -10.74184 -10.23643 -10.08560 -10.02130 -9.23622 -9.04784 -4.95219 0.01057 0.31927 0.77013 1.01716 1.38070 1.57688 1.65600 1.87562 1.95823 1.98081 2.08861 2.16235 2.70080 2.90431 3.00336 3.20296 3.44891 3.48089 3.61385 3.72338 3.73912 3.79941 3.82144 3.86324 3.90330 4.05359 4.06493 4.16761 4.21388 4.24244 4.29583 4.33171 4.33690 4.46028 4.51630 4.53588 4.60452 4.62596 4.64235 4.72229 4.83807 4.92406 4.94001 4.99948 5.02454 5.06972 5.17369 5.18782 5.19249 5.27570 5.33723 5.35071 5.47411 5.50322 5.78292 5.96076 6.19986 6.44494 6.51192 6.58220 7.30174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.064 4.064 3 Si 0.798 3.202 4 C 0.010 3.990 5 C -0.198 4.198 6 C -0.198 4.198 7 C -0.023 4.023 8 N -0.401 5.401 9 C 0.121 3.879 10 C -0.130 4.130 11 C -0.097 4.097 12 C -0.067 4.067 13 C -0.097 4.097 14 C 0.513 3.487 15 O -0.577 6.577 16 N -0.714 5.714 17 C 0.143 3.857 18 H 0.066 0.934 19 C -0.112 4.112 20 C -0.109 4.109 21 C 0.079 3.921 22 H 0.098 0.902 23 O -0.376 6.376 24 C 0.596 3.404 25 F -0.177 7.177 26 F -0.149 7.149 27 F -0.173 7.173 28 C -0.143 4.143 29 C -0.119 4.119 30 C -0.095 4.095 31 C -0.110 4.110 32 H 0.390 0.610 33 H 0.088 0.912 34 H -0.280 1.280 35 H -0.308 1.308 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.419 0.581 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.053 0.947 52 H 0.146 0.854 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 -8.444 -2.653 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.172 4.172 3 Si 0.702 3.298 4 C -0.099 4.099 5 C -0.222 4.222 6 C -0.222 4.222 7 C -0.150 4.150 8 N -0.074 5.074 9 C 0.032 3.968 10 C -0.149 4.149 11 C -0.116 4.116 12 C -0.068 4.068 13 C -0.136 4.136 14 C 0.300 3.700 15 O -0.456 6.456 16 N -0.367 5.367 17 C 0.038 3.962 18 H 0.084 0.916 19 C -0.150 4.150 20 C -0.147 4.147 21 C 0.024 3.976 22 H 0.116 0.884 23 O -0.300 6.300 24 C 0.504 3.496 25 F -0.159 7.159 26 F -0.131 7.131 27 F -0.156 7.156 28 C -0.181 4.181 29 C -0.158 4.158 30 C -0.113 4.113 31 C -0.130 4.130 32 H 0.240 0.760 33 H 0.106 0.894 34 H -0.207 1.207 35 H -0.235 1.235 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.195 0.805 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.257 0.743 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.072 0.928 52 H 0.163 0.837 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.667 -7.174 -2.386 7.589 hybrid contribution -1.539 0.027 0.090 1.542 sum -0.871 -7.146 -2.296 7.556 Atomic orbital electron populations 1.86623 1.18310 1.80586 1.50640 1.24781 0.84113 1.11985 0.96286 0.93804 0.89744 0.70147 0.76138 1.20311 0.98433 0.91529 0.99654 1.21003 0.99868 1.03724 0.97575 1.21217 1.01446 0.97496 1.01999 1.22373 0.95899 1.04150 0.92609 1.41609 1.21275 1.21792 1.22735 1.17783 0.86765 0.97577 0.94701 1.21119 0.92772 1.00838 1.00162 1.21063 0.97295 0.97045 0.96172 1.19583 0.95199 0.98553 0.93467 1.20766 0.91833 0.96969 1.04077 1.20993 0.82291 0.89362 0.77343 1.90769 1.76812 1.19972 1.58003 1.45912 1.18068 1.11977 1.60713 1.20950 0.89791 0.92007 0.93427 0.91578 1.21727 0.96940 0.97851 0.98469 1.21569 0.97186 0.99313 0.96603 1.22859 0.89168 0.89639 0.95921 0.88443 1.88376 1.24175 1.64632 1.52816 1.19554 0.80567 0.74474 0.75012 1.93260 1.93933 1.90616 1.38067 1.93267 1.71948 1.65372 1.82511 1.93262 1.82695 1.43429 1.96185 1.22114 0.98329 0.99202 0.98473 1.21790 0.97075 0.98762 0.98129 1.21087 0.92127 0.97971 1.00144 1.20998 0.99606 0.98234 0.94124 0.75991 0.89389 1.20713 1.23542 0.81293 0.82155 0.80520 0.86039 0.84073 0.84963 0.84665 0.74292 0.88608 0.88532 0.90762 0.88761 0.91344 0.90874 0.89613 0.92816 0.83656 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.60 10.92 -148.98 -1.63 -6.22 16 2 C -0.06 -0.29 2.47 71.23 0.18 -0.11 16 3 Si 0.80 1.38 30.88 68.60 2.12 3.50 16 4 C 0.01 0.08 6.13 41.04 0.25 0.33 16 5 C -0.20 -1.11 9.39 22.16 0.21 -0.91 16 6 C -0.20 -1.08 10.86 22.15 0.24 -0.84 16 7 C -0.02 -0.15 11.21 83.18 0.93 0.78 16 8 N -0.40 -3.70 2.84 -333.41 -0.95 -4.65 16 9 C 0.12 1.03 4.66 38.08 0.18 1.21 16 10 C -0.13 -0.94 9.77 22.38 0.22 -0.72 16 11 C -0.10 -0.33 9.69 22.25 0.22 -0.11 16 12 C -0.07 -0.06 4.38 -19.85 -0.09 -0.15 16 13 C -0.10 0.66 5.83 29.10 0.17 0.83 16 14 C 0.51 -0.50 7.79 87.66 0.68 0.18 16 15 O -0.58 -5.79 15.70 -3.04 -0.05 -5.84 16 16 N -0.71 5.12 5.08 -442.54 -2.25 2.87 16 17 C 0.14 -0.66 2.45 44.99 0.11 -0.55 16 18 H 0.07 0.10 7.58 -2.39 -0.02 0.08 16 19 C -0.11 1.11 5.39 30.59 0.16 1.27 16 20 C -0.11 0.69 5.57 30.60 0.17 0.86 16 21 C 0.08 -0.24 2.40 30.60 0.07 -0.17 16 22 H 0.10 -0.56 7.20 -2.38 -0.02 -0.58 16 23 O -0.38 -0.66 10.24 -148.98 -1.52 -2.19 16 24 C 0.60 1.39 3.71 113.37 0.42 1.81 16 25 F -0.18 -0.51 15.44 44.97 0.69 0.19 16 26 F -0.15 -0.69 17.53 44.97 0.79 0.10 16 27 F -0.17 -0.25 16.61 44.97 0.75 0.50 16 28 C -0.14 0.17 5.39 30.59 0.16 0.33 16 29 C -0.12 0.33 5.50 30.60 0.17 0.50 16 30 C -0.09 -0.20 9.69 22.25 0.22 0.02 16 31 C -0.11 -0.63 8.61 22.38 0.19 -0.44 16 32 H 0.39 0.63 8.74 -74.06 -0.65 -0.01 16 33 H 0.09 0.06 7.96 -2.38 -0.02 0.04 16 34 H -0.28 -1.32 7.11 99.48 0.71 -0.61 16 35 H -0.31 -3.33 7.11 99.48 0.71 -2.62 16 36 H 0.17 -0.05 6.60 -2.91 -0.02 -0.07 16 37 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 39 H 0.12 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 41 H 0.13 -1.57 8.08 -2.38 -0.02 -1.59 16 42 H 0.14 -1.69 8.08 -2.39 -0.02 -1.71 16 43 H 0.42 -6.01 8.60 -92.71 -0.80 -6.81 16 44 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 45 H 0.10 -1.30 8.14 -2.39 -0.02 -1.32 16 46 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.07 0.02 6.50 -2.39 -0.02 0.01 16 50 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 51 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 52 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 53 H 0.12 0.57 8.06 -2.91 -0.02 0.54 16 Total: 0.00 -26.44 445.03 2.39 -24.05 By element: Atomic # 1 Polarization: -16.01 SS G_CDS: -0.44 Total: -16.45 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 4.87 Total: 4.14 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -3.19 Total: -1.78 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -3.20 Total: -14.25 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 2.23 Total: 0.78 kcal Atomic # 14 Polarization: 1.38 SS G_CDS: 2.12 Total: 3.50 kcal Total: -26.44 2.39 -24.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.002 kcal (2) G-P(sol) polarization free energy of solvation -26.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds