Wall clock time and date at job start Sun Mar 7 2021 15:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47317 * 2 1 4 4 C 1.50701 * 109.47024 * 240.00278 * 2 1 3 5 5 C 1.33743 * 125.11733 * 299.99686 * 4 2 1 6 6 C 1.37802 * 115.08030 * 179.97438 * 5 4 2 7 7 C 1.34977 * 114.70103 * 0.02562 * 6 5 4 8 8 C 1.47565 * 125.27550 * 180.02562 * 7 6 5 9 9 C 1.39815 * 119.99672 * 179.97438 * 8 7 6 10 10 C 1.36570 * 119.99954 * 179.97438 * 9 8 7 11 11 C 1.39832 * 119.99525 * 0.25927 * 10 9 8 12 12 C 1.47563 * 119.99691 * 179.72634 * 11 10 9 13 13 O 1.21593 * 119.99944 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00064 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.47028 * 34.99535 * 15 14 12 17 17 C 1.52995 * 109.47495 * 154.99712 * 15 14 12 18 18 C 1.52998 * 109.47152 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47229 * 299.99860 * 18 17 15 20 20 H 1.08993 * 109.47008 * 300.00448 * 19 18 17 21 21 O 1.42895 * 109.46700 * 179.97438 * 19 18 17 22 22 C 1.42905 * 113.99464 * 150.00225 * 21 19 18 23 23 F 1.39897 * 109.47272 * 60.00281 * 22 21 19 24 24 F 1.39905 * 109.47127 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47226 * 299.99658 * 22 21 19 26 26 C 1.53001 * 109.46959 * 60.00338 * 19 18 17 27 27 C 1.53001 * 109.46744 * 275.00111 * 15 14 12 28 28 C 1.39828 * 120.00130 * 359.50888 * 11 10 9 29 29 C 1.36565 * 119.99829 * 0.46689 * 28 11 10 30 30 S 1.75861 * 125.12349 * 120.28122 * 4 2 1 31 31 H 0.96698 * 113.99893 * 59.99667 * 1 2 3 32 32 H 1.08997 * 109.47474 * 120.00427 * 2 1 3 33 33 H 1.48501 * 109.99784 * 60.00190 * 3 2 1 34 34 H 1.48498 * 109.99952 * 181.32233 * 3 2 1 35 35 H 1.08003 * 122.46036 * 0.02562 * 5 4 2 36 36 H 1.08003 * 122.64814 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.00101 * 359.95406 * 9 8 7 38 38 H 1.08002 * 119.99809 * 179.97438 * 10 9 8 39 39 H 0.97000 * 119.99891 * 359.97438 * 14 12 11 40 40 H 1.09004 * 109.47225 * 300.00095 * 17 15 14 41 41 H 1.09007 * 109.46745 * 59.99505 * 17 15 14 42 42 H 1.08999 * 109.46893 * 60.00310 * 18 17 15 43 43 H 1.09008 * 109.46869 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.47227 * 59.99511 * 26 19 18 45 45 H 1.08992 * 109.46925 * 180.02562 * 26 19 18 46 46 H 1.09008 * 109.46888 * 299.99510 * 27 15 14 47 47 H 1.08995 * 109.47849 * 59.99621 * 27 15 14 48 48 H 1.07995 * 120.00567 * 180.23525 * 28 11 10 49 49 H 1.07991 * 120.00541 * 179.77063 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6721 -1.9847 -1.5429 6 6 2.2371 -2.4240 -2.7205 7 6 2.9666 -1.4969 -3.3764 8 6 3.6710 -1.7147 -4.6547 9 6 4.3969 -0.6725 -5.2392 10 6 5.0493 -0.8742 -6.4219 11 6 4.9866 -2.1215 -7.0510 12 6 5.6865 -2.3377 -8.3320 13 8 6.3172 -1.4311 -8.8407 14 7 5.6266 -3.5400 -8.9380 15 6 6.3218 -3.7549 -10.2095 16 1 7.2502 -3.1837 -10.2170 17 6 6.6372 -5.2430 -10.3733 18 6 7.3627 -5.4674 -11.7015 19 6 6.4698 -5.0054 -12.8549 20 1 5.5415 -5.5765 -12.8469 21 8 7.1477 -5.2144 -14.0953 22 6 6.2761 -5.4772 -15.1968 23 9 5.4117 -4.3921 -15.3767 24 9 7.0348 -5.6656 -16.3571 25 9 5.5288 -6.6305 -14.9354 26 6 6.1545 -3.5172 -12.6911 27 6 5.4294 -3.2926 -11.3631 28 6 4.2646 -3.1652 -6.4639 29 6 3.6127 -2.9635 -5.2809 30 16 2.9524 0.0093 -2.4683 31 1 -0.3933 0.4417 -0.7650 32 1 1.7924 -0.5139 0.8899 33 1 1.5616 2.4678 1.2085 34 1 3.5347 1.7702 -0.0322 35 1 1.0639 -2.6224 -0.9185 36 1 2.1066 -3.4306 -3.0894 37 1 4.4415 0.2921 -4.7556 38 1 5.6097 -0.0690 -6.8737 39 1 5.1237 -4.2633 -8.5320 40 1 7.2730 -5.5723 -9.5514 41 1 5.7087 -5.8141 -10.3658 42 1 8.2911 -4.8962 -11.7094 43 1 7.5878 -6.5276 -11.8180 44 1 7.0828 -2.9461 -12.6990 45 1 5.5180 -3.1882 -13.5124 46 1 4.5010 -3.8638 -11.3557 47 1 5.2047 -2.2325 -11.2465 48 1 4.2193 -4.1296 -6.9478 49 1 3.0520 -3.7684 -4.8293 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:02:29 Heat of formation + Delta-G solvation = -216.200585 kcal Electronic energy + Delta-G solvation = -37407.911640 eV Core-core repulsion = 31784.472376 eV Total energy + Delta-G solvation = -5623.439264 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.110 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.25640 -49.01058 -48.93918 -41.57790 -40.53844 -39.79156 -39.01882 -37.91954 -37.34574 -35.05949 -33.46943 -32.28273 -31.98244 -30.75382 -29.73123 -27.22394 -26.32302 -24.83675 -24.10247 -23.88620 -23.61847 -23.02438 -21.59527 -21.34051 -20.44366 -20.24007 -19.96618 -19.74528 -19.17300 -18.56667 -17.75085 -17.38548 -16.91729 -16.58199 -16.31927 -16.22235 -16.16786 -16.00707 -15.97198 -15.73309 -15.60836 -15.47455 -15.38175 -15.36047 -15.12768 -15.08408 -14.99117 -14.69667 -14.51295 -14.41153 -14.37345 -14.24742 -13.90179 -13.88368 -13.60579 -13.34414 -13.31155 -13.08370 -12.99171 -12.75870 -12.58650 -12.29148 -12.25150 -12.12657 -12.04101 -11.60727 -11.56530 -11.25271 -11.07129 -10.80596 -10.53259 -10.17795 -10.15478 -9.55071 -9.02334 -5.16314 -0.87969 0.26251 0.35352 0.38805 0.76731 0.80912 1.22006 1.52792 1.59419 1.84729 1.95865 1.97477 2.09637 2.84347 2.94437 3.04468 3.39862 3.44746 3.48260 3.51478 3.67672 3.70300 3.75847 3.83147 3.86354 3.89065 3.96641 4.07237 4.21451 4.23750 4.32405 4.36521 4.37167 4.45623 4.47260 4.56767 4.62428 4.64588 4.75370 4.93391 4.95458 5.01592 5.02882 5.04909 5.06930 5.12101 5.19045 5.24519 5.29815 5.33524 5.35950 5.43562 5.49133 5.74758 6.46747 6.66277 7.14206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.024 4.024 3 Si 0.716 3.284 4 C -0.222 4.222 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.159 4.159 8 C 0.006 3.994 9 C -0.129 4.129 10 C -0.065 4.065 11 C -0.150 4.150 12 C 0.558 3.442 13 O -0.579 6.579 14 N -0.706 5.706 15 C 0.141 3.859 16 H 0.071 0.929 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.079 3.921 20 H 0.098 0.902 21 O -0.375 6.375 22 C 0.596 3.404 23 F -0.176 7.176 24 F -0.150 7.150 25 F -0.174 7.174 26 C -0.142 4.142 27 C -0.120 4.120 28 C -0.066 4.066 29 C -0.109 4.109 30 S 0.120 5.880 31 H 0.396 0.604 32 H 0.123 0.877 33 H -0.269 1.269 34 H -0.268 1.268 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.166 0.834 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -4.905 2.276 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.619 3.381 4 C -0.339 4.339 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.276 4.276 8 C 0.003 3.997 9 C -0.148 4.148 10 C -0.084 4.084 11 C -0.154 4.154 12 C 0.347 3.653 13 O -0.460 6.460 14 N -0.358 5.358 15 C 0.037 3.963 16 H 0.089 0.911 17 C -0.151 4.151 18 C -0.146 4.146 19 C 0.024 3.976 20 H 0.116 0.884 21 O -0.299 6.299 22 C 0.504 3.496 23 F -0.158 7.158 24 F -0.131 7.131 25 F -0.156 7.156 26 C -0.180 4.180 27 C -0.159 4.159 28 C -0.085 4.085 29 C -0.128 4.128 30 S 0.387 5.613 31 H 0.247 0.753 32 H 0.140 0.860 33 H -0.194 1.194 34 H -0.194 1.194 35 H 0.171 0.829 36 H 0.185 0.815 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.183 0.817 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.101 -2.526 2.663 4.230 hybrid contribution -0.760 -1.628 0.190 1.806 sum -2.861 -4.154 2.854 5.795 Atomic orbital electron populations 1.86491 1.16518 1.82041 1.50413 1.24390 0.85297 1.08980 0.95101 0.94189 0.79507 0.76488 0.87877 1.25157 1.06949 0.99404 1.02396 1.20189 1.01243 0.94828 0.97728 1.20638 0.97729 1.01379 0.94911 1.23172 1.06588 0.98179 0.99640 1.18468 0.95143 0.94702 0.91338 1.21024 0.98377 0.99296 0.96116 1.20946 0.96624 0.96671 0.94162 1.20033 1.03156 0.96179 0.96017 1.18469 0.79718 0.82631 0.84525 1.90793 1.44288 1.43755 1.67195 1.45803 1.53454 1.13126 1.23412 1.21074 0.95386 0.97726 0.82154 0.91085 1.21743 1.02935 0.93302 0.97117 1.21556 0.98527 1.03571 0.90949 1.22856 0.97323 0.97150 0.80302 0.88395 1.88377 1.33511 1.90072 1.17964 1.19551 0.75513 0.74498 0.80026 1.93261 1.71291 1.55900 1.95395 1.93268 1.76856 1.95026 1.47985 1.93260 1.77566 1.51035 1.93739 1.22103 1.02014 0.95285 0.98633 1.21795 0.99360 1.01929 0.92773 1.21277 0.93725 0.98683 0.94799 1.21207 0.99945 0.96328 0.95355 1.84212 1.48898 1.13476 1.14701 0.75327 0.86025 1.19425 1.19422 0.82865 0.81521 0.84982 0.85457 0.74440 0.88598 0.88367 0.90619 0.88658 0.91075 0.90654 0.89525 0.92580 0.81703 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.83 12.86 -148.98 -1.92 -1.09 16 2 C -0.02 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.72 -1.17 30.96 68.60 2.12 0.95 16 4 C -0.22 0.27 5.73 24.66 0.14 0.41 16 5 C -0.11 0.22 10.00 21.14 0.21 0.43 16 6 C -0.12 0.36 9.64 21.42 0.21 0.57 16 7 C -0.16 0.13 6.37 23.98 0.15 0.28 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.14 9.54 22.26 0.21 0.07 16 10 C -0.07 -0.20 9.53 22.27 0.21 0.02 16 11 C -0.15 -0.09 5.88 -20.05 -0.12 -0.21 16 12 C 0.56 1.86 7.73 86.70 0.67 2.53 16 13 O -0.58 -7.26 15.99 -4.01 -0.06 -7.32 16 14 N -0.71 3.18 5.03 -445.66 -2.24 0.94 16 15 C 0.14 -0.54 2.45 44.99 0.11 -0.43 16 16 H 0.07 0.12 7.58 -2.38 -0.02 0.11 16 17 C -0.11 1.09 5.39 30.59 0.16 1.25 16 18 C -0.11 0.72 5.57 30.59 0.17 0.89 16 19 C 0.08 -0.28 2.40 30.59 0.07 -0.20 16 20 H 0.10 -0.61 7.20 -2.39 -0.02 -0.63 16 21 O -0.38 -0.46 10.24 -148.98 -1.52 -1.99 16 22 C 0.60 1.09 3.71 113.37 0.42 1.51 16 23 F -0.18 -0.40 15.44 44.97 0.69 0.29 16 24 F -0.15 -0.63 17.53 44.97 0.79 0.16 16 25 F -0.17 -0.18 16.61 44.97 0.75 0.57 16 26 C -0.14 0.25 5.39 30.58 0.16 0.41 16 27 C -0.12 0.32 5.49 30.58 0.17 0.49 16 28 C -0.07 0.40 9.48 22.26 0.21 0.61 16 29 C -0.11 0.57 9.48 22.26 0.21 0.78 16 30 S 0.12 -0.08 19.46 -56.49 -1.10 -1.18 16 31 H 0.40 -3.58 8.70 -74.06 -0.64 -4.23 16 32 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H -0.27 -1.16 7.11 99.48 0.71 -0.45 16 34 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 35 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 36 H 0.17 -1.38 6.88 -2.91 -0.02 -1.40 16 37 H 0.13 -0.05 7.26 -2.91 -0.02 -0.08 16 38 H 0.13 0.62 7.64 -2.91 -0.02 0.60 16 39 H 0.42 -4.85 6.61 -92.71 -0.61 -5.47 16 40 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.10 -1.33 8.14 -2.38 -0.02 -1.35 16 42 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 44 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.07 -0.04 6.50 -2.39 -0.02 -0.05 16 46 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 47 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.17 -2.28 6.38 -2.91 -0.02 -2.30 16 49 H 0.16 -1.73 6.74 -2.92 -0.02 -1.75 16 Total: 0.00 -20.54 425.46 0.81 -19.72 By element: Atomic # 1 Polarization: -20.42 SS G_CDS: -0.17 Total: -20.59 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 3.48 Total: 9.54 kcal Atomic # 7 Polarization: 3.18 SS G_CDS: -2.24 Total: 0.94 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -3.50 Total: -10.39 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 2.23 Total: 1.02 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.12 Total: 0.95 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.10 Total: -1.18 kcal Total: -20.54 0.81 -19.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.478 kcal (2) G-P(sol) polarization free energy of solvation -20.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds