Wall clock time and date at job start Sun Mar 7 2021 15:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86306 * 109.47150 * 2 1 4 4 C 1.50700 * 109.47155 * 239.99983 * 2 1 3 5 5 C 1.31118 * 118.54399 * 119.99853 * 4 2 1 6 6 N 1.38933 * 121.84752 * 180.43158 * 5 4 2 7 7 C 1.47032 * 118.88079 * 346.68199 * 6 5 4 8 8 C 1.53542 * 107.71087 * 43.63341 * 7 6 5 9 9 C 1.50204 * 118.54689 * 300.02346 * 4 2 1 10 10 C 1.50698 * 109.33061 * 39.66289 * 9 4 2 11 11 O 1.21285 * 119.99674 * 119.99719 * 10 9 4 12 12 N 1.34774 * 120.00023 * 300.00188 * 10 9 4 13 13 C 1.46498 * 120.00027 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46958 * 324.99822 * 13 12 10 15 15 C 1.52994 * 109.47229 * 84.99609 * 13 12 10 16 16 C 1.52997 * 109.47303 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47147 * 300.00515 * 16 15 13 18 18 H 1.09001 * 109.46851 * 299.99718 * 17 16 15 19 19 O 1.42903 * 109.47406 * 180.02562 * 17 16 15 20 20 C 1.42900 * 113.99941 * 89.99508 * 19 17 16 21 21 F 1.39899 * 109.47322 * 60.00607 * 20 19 17 22 22 F 1.39904 * 109.46829 * 180.02562 * 20 19 17 23 23 F 1.39900 * 109.47261 * 300.00005 * 20 19 17 24 24 C 1.52994 * 109.47439 * 59.99569 * 17 16 15 25 25 C 1.52995 * 109.47265 * 205.00312 * 13 12 10 26 26 H 0.96695 * 113.99874 * 59.99977 * 1 2 3 27 27 H 1.09004 * 109.47287 * 120.00126 * 2 1 3 28 28 H 1.48498 * 109.99771 * 298.68303 * 3 2 1 29 29 H 1.48505 * 109.99911 * 60.00039 * 3 2 1 30 30 H 1.07995 * 119.07993 * 0.40616 * 5 4 2 31 31 H 0.96993 * 120.56089 * 166.66380 * 6 5 4 32 32 H 1.09002 * 109.82030 * 163.20634 * 7 6 5 33 33 H 1.08998 * 109.82172 * 284.06433 * 7 6 5 34 34 H 1.09004 * 109.62146 * 58.80244 * 8 7 6 35 35 H 1.09001 * 109.62186 * 179.35455 * 8 7 6 36 36 H 1.08994 * 109.32689 * 280.00692 * 9 4 2 37 37 H 0.96997 * 119.99654 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47526 * 299.99970 * 15 13 12 39 39 H 1.09001 * 109.46977 * 60.00225 * 15 13 12 40 40 H 1.08996 * 109.47553 * 180.02562 * 16 15 13 41 41 H 1.08995 * 109.47317 * 59.99827 * 16 15 13 42 42 H 1.08995 * 109.47526 * 180.02562 * 24 17 16 43 43 H 1.09001 * 109.46977 * 60.00226 * 24 17 16 44 44 H 1.09001 * 109.46733 * 299.99648 * 25 13 12 45 45 H 1.08996 * 109.47624 * 59.99394 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.6832 -0.0459 -2.0745 6 7 3.1760 -0.6304 -3.2346 7 6 3.1006 -2.0915 -3.3809 8 6 1.7098 -2.5373 -2.9072 9 6 1.5482 -2.1481 -1.4359 10 6 0.1127 -2.3459 -1.0220 11 8 -0.7021 -2.7408 -1.8289 12 7 -0.2656 -2.0838 0.2447 13 6 -1.6609 -2.2765 0.6472 14 1 -2.3176 -2.0205 -0.1843 15 6 -1.8812 -3.7389 1.0394 16 6 -3.3386 -3.9403 1.4591 17 6 -3.6545 -3.0386 2.6542 18 1 -2.9982 -3.2945 3.4859 19 8 -5.0156 -3.2271 3.0466 20 6 -5.2023 -4.2555 4.0212 21 9 -4.4796 -3.9397 5.1767 22 9 -6.5618 -4.3593 4.3348 23 9 -4.7487 -5.4744 3.5058 24 6 -3.4342 -1.5762 2.2620 25 6 -1.9762 -1.3748 1.8423 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 0.8900 28 1 1.5879 2.4586 -1.2242 29 1 1.5615 2.4679 1.2085 30 1 2.9258 0.9848 -1.8623 31 1 3.5630 -0.0839 -3.9362 32 1 3.2406 -2.3660 -4.4264 33 1 3.8686 -2.5644 -2.7688 34 1 0.9437 -2.0403 -3.5024 35 1 1.6159 -3.6180 -3.0134 36 1 2.1904 -2.7833 -0.8259 37 1 0.3861 -1.7675 0.8898 38 1 -1.6567 -4.3812 0.1879 39 1 -1.2246 -3.9949 1.8709 40 1 -3.4955 -4.9820 1.7390 41 1 -3.9950 -3.6844 0.6275 42 1 -3.6588 -0.9339 3.1134 43 1 -4.0906 -1.3203 1.4302 44 1 -1.3196 -1.6309 2.6738 45 1 -1.8192 -0.3331 1.5629 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849236_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:03:04 Heat of formation + Delta-G solvation = -233.380730 kcal Electronic energy + Delta-G solvation = -33411.766885 eV Core-core repulsion = 28402.361319 eV Total energy + Delta-G solvation = -5009.405565 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.149 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -51.28116 -49.03477 -48.96283 -41.64489 -40.44560 -39.15515 -37.98072 -37.51096 -34.53185 -33.35357 -32.69951 -31.94608 -29.95706 -27.21450 -26.43436 -25.62648 -23.95684 -23.45492 -23.07407 -21.48846 -21.29745 -20.43714 -19.99067 -19.74908 -19.31312 -18.81218 -17.98023 -17.51774 -17.14518 -16.65931 -16.31404 -16.11516 -16.05293 -15.75816 -15.74903 -15.51430 -15.39816 -15.31934 -15.15398 -15.14348 -15.05334 -14.79730 -14.62278 -14.41487 -14.22741 -13.95397 -13.87857 -13.65045 -13.30557 -13.19080 -12.85496 -12.74077 -12.58990 -12.23601 -12.20222 -12.05652 -11.84390 -11.70482 -11.52814 -11.31523 -11.18496 -10.60577 -10.46466 -9.46890 -8.38833 -4.81501 0.78751 1.31430 1.51071 1.66963 1.88488 1.98433 2.08072 2.42111 2.70881 2.92164 3.02146 3.47996 3.49269 3.57728 3.73333 3.84247 3.90084 3.91121 3.98931 4.08839 4.13259 4.25316 4.31855 4.37794 4.38376 4.42462 4.52983 4.65973 4.70798 4.75945 4.77684 4.84078 4.89429 4.95617 5.04894 5.08336 5.15763 5.26419 5.30066 5.31326 5.38635 5.49662 5.73447 6.35338 6.54172 6.82095 6.98555 7.50403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.057 4.057 3 Si 0.739 3.261 4 C -0.290 4.290 5 C 0.157 3.843 6 N -0.747 5.747 7 C 0.123 3.877 8 C -0.119 4.119 9 C -0.036 4.036 10 C 0.527 3.473 11 O -0.600 6.600 12 N -0.673 5.673 13 C 0.153 3.847 14 H 0.061 0.939 15 C -0.120 4.120 16 C -0.140 4.140 17 C 0.081 3.919 18 H 0.095 0.905 19 O -0.376 6.376 20 C 0.596 3.404 21 F -0.174 7.174 22 F -0.149 7.149 23 F -0.176 7.176 24 C -0.108 4.108 25 C -0.106 4.106 26 H 0.367 0.633 27 H 0.131 0.869 28 H -0.303 1.303 29 H -0.310 1.310 30 H 0.146 0.854 31 H 0.412 0.588 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.412 0.588 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 2.461 0.348 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.168 4.168 3 Si 0.648 3.352 4 C -0.301 4.301 5 C 0.034 3.966 6 N -0.377 5.377 7 C -0.002 4.002 8 C -0.158 4.158 9 C -0.057 4.057 10 C 0.314 3.686 11 O -0.481 6.481 12 N -0.325 5.325 13 C 0.047 3.953 14 H 0.079 0.921 15 C -0.159 4.159 16 C -0.178 4.178 17 C 0.026 3.974 18 H 0.113 0.887 19 O -0.300 6.300 20 C 0.504 3.496 21 F -0.156 7.156 22 F -0.131 7.131 23 F -0.158 7.158 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.216 0.784 27 H 0.148 0.852 28 H -0.232 1.232 29 H -0.239 1.239 30 H 0.162 0.838 31 H 0.247 0.753 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.406 2.650 0.301 8.819 hybrid contribution -1.157 -0.059 -0.472 1.251 sum 7.250 2.591 -0.171 7.701 Atomic orbital electron populations 1.86887 1.18456 1.78273 1.49939 1.24719 0.83716 1.09374 0.98983 0.94657 0.91565 0.73780 0.75226 1.20477 1.10591 0.96238 1.02822 1.20610 0.92360 0.96958 0.86683 1.44689 1.67104 1.06953 1.19004 1.21665 0.95461 0.80600 1.02460 1.21660 0.97908 1.01457 0.94767 1.19665 0.92335 0.95896 0.97812 1.20740 0.90660 0.75274 0.81883 1.90679 1.55431 1.49103 1.52927 1.45913 1.10367 1.64974 1.11260 1.20756 0.83687 0.93812 0.97017 0.92095 1.21826 0.95260 0.97235 1.01568 1.22092 0.97692 1.00093 0.97942 1.22829 0.78100 0.98643 0.97828 0.88677 1.88372 1.32891 1.52201 1.56559 1.19549 0.74709 0.77724 0.77619 1.93259 1.78336 1.92583 1.51462 1.93266 1.31607 1.95713 1.92474 1.93260 1.89084 1.46717 1.86727 1.21581 0.97786 0.92196 1.03016 1.21655 0.94562 1.01079 0.97074 0.78371 0.85158 1.23154 1.23893 0.83755 0.75265 0.88902 0.90731 0.93196 0.90846 0.87304 0.74799 0.92628 0.90045 0.90685 0.91281 0.89310 0.90882 0.89659 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.04 6.66 -148.98 -0.99 1.05 16 2 C -0.06 0.39 1.83 71.24 0.13 0.52 16 3 Si 0.74 -3.88 29.68 68.60 2.04 -1.85 16 4 C -0.29 1.34 5.26 -16.76 -0.09 1.25 16 5 C 0.16 -0.87 9.63 83.41 0.80 -0.07 16 6 N -0.75 4.61 5.83 -345.88 -2.02 2.59 16 7 C 0.12 -0.69 7.15 86.46 0.62 -0.07 16 8 C -0.12 0.00 4.92 30.79 0.15 0.15 16 9 C -0.04 0.06 2.74 -12.43 -0.03 0.02 16 10 C 0.53 1.93 6.25 87.66 0.55 2.48 16 11 O -0.60 -7.96 15.46 -3.04 -0.05 -8.01 16 12 N -0.67 1.04 2.58 -442.55 -1.14 -0.10 16 13 C 0.15 -0.03 2.23 44.99 0.10 0.07 16 14 H 0.06 0.34 7.58 -2.39 -0.02 0.33 16 15 C -0.12 -0.04 5.49 30.59 0.17 0.13 16 16 C -0.14 -0.15 5.39 30.59 0.17 0.02 16 17 C 0.08 -0.02 2.40 30.59 0.07 0.05 16 18 H 0.10 -0.26 7.20 -2.39 -0.02 -0.28 16 19 O -0.38 -1.42 10.24 -148.98 -1.53 -2.94 16 20 C 0.60 2.29 3.71 113.37 0.42 2.71 16 21 F -0.17 -0.55 16.61 44.97 0.75 0.20 16 22 F -0.15 -0.87 17.53 44.97 0.79 -0.08 16 23 F -0.18 -0.71 15.44 44.97 0.69 -0.02 16 24 C -0.11 0.26 5.58 30.61 0.17 0.44 16 25 C -0.11 0.46 5.15 30.61 0.16 0.62 16 26 H 0.37 -1.24 8.70 -74.06 -0.64 -1.89 16 27 H 0.13 -1.43 7.07 -2.38 -0.02 -1.44 16 28 H -0.30 -0.33 7.10 99.48 0.71 0.38 16 29 H -0.31 -1.02 7.11 99.48 0.71 -0.31 16 30 H 0.15 -1.25 4.37 -2.91 -0.01 -1.27 16 31 H 0.41 -3.89 8.96 -92.71 -0.83 -4.72 16 32 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.05 0.30 7.75 -2.38 -0.02 0.28 16 35 H 0.07 0.06 8.14 -2.39 -0.02 0.05 16 36 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.41 -2.37 5.70 -92.71 -0.53 -2.90 16 38 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 0.14 6.50 -2.39 -0.02 0.12 16 41 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.09 -0.36 7.07 -2.39 -0.02 -0.38 16 Total: 0.00 -16.53 354.28 1.03 -15.50 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: -0.90 Total: -14.65 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 3.39 Total: 8.31 kcal Atomic # 7 Polarization: 5.65 SS G_CDS: -3.16 Total: 2.49 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -2.56 Total: -9.90 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 2.23 Total: 0.10 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.04 Total: -1.85 kcal Total: -16.53 1.03 -15.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849236_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.876 kcal (2) G-P(sol) polarization free energy of solvation -16.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds