Wall clock time and date at job start Sun Mar 7 2021 15:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33871 * 124.19290 * 2 1 4 4 O 1.21536 * 123.79013 * 359.97438 * 3 2 1 5 5 N 1.34670 * 112.41891 * 180.02562 * 3 2 1 6 6 C 1.46860 * 106.42522 * 0.02562 * 5 3 2 7 7 C 1.52473 * 110.47735 * 118.54351 * 6 5 3 8 8 C 1.53082 * 109.58789 * 181.30160 * 7 6 5 9 9 C 1.53013 * 109.42022 * 300.85237 * 8 7 6 10 10 N 1.46502 * 109.46585 * 180.49621 * 9 8 7 11 11 C 1.34781 * 119.99893 * 155.00186 * 10 9 8 12 12 O 1.21695 * 119.99808 * 359.97438 * 11 10 9 13 13 C 1.46672 * 119.99848 * 179.97438 * 11 10 9 14 14 C 1.37867 * 126.23323 * 180.32579 * 13 11 10 15 15 C 1.39837 * 107.08803 * 180.11857 * 14 13 11 16 16 C 1.50693 * 126.07117 * 179.83783 * 15 14 13 17 17 O 1.42907 * 109.47661 * 299.72324 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 179.72014 * 16 15 14 19 19 C 1.35449 * 107.86224 * 359.58336 * 15 14 13 20 20 N 1.35533 * 108.87412 * 0.25891 * 19 15 14 21 21 C 1.53013 * 109.49894 * 60.48602 * 9 8 7 22 22 C 1.52469 * 110.48205 * 241.44304 * 6 5 3 23 23 C 1.34915 * 124.19786 * 180.02562 * 2 1 3 24 24 O 1.21231 * 127.25146 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47281 * 359.97188 * 1 2 3 26 26 H 1.08999 * 109.46976 * 119.97603 * 1 2 3 27 27 H 1.09002 * 109.46951 * 239.96924 * 1 2 3 28 28 H 0.97000 * 126.78799 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.45188 * 61.26714 * 7 6 5 30 30 H 1.09000 * 109.45012 * 301.33895 * 7 6 5 31 31 H 1.09003 * 109.47633 * 180.86598 * 8 7 6 32 32 H 1.08995 * 109.47908 * 60.83841 * 8 7 6 33 33 H 1.09004 * 109.46395 * 300.48153 * 9 8 7 34 34 H 0.96997 * 119.99733 * 334.99658 * 10 9 8 35 35 H 1.08005 * 126.45919 * 359.96450 * 14 13 11 36 36 H 1.09000 * 109.46936 * 59.71947 * 16 15 14 37 37 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 38 38 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 39 39 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 40 40 H 1.08006 * 125.56544 * 180.27862 * 19 15 14 41 41 H 0.97002 * 125.68230 * 179.97438 * 20 19 15 42 42 H 1.09001 * 109.47668 * 59.49344 * 21 9 8 43 43 H 1.08992 * 109.48065 * 179.53202 * 21 9 8 44 44 H 1.08997 * 109.45431 * 298.73692 * 22 6 5 45 45 H 1.08998 * 109.45019 * 58.66505 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7617 2.2340 -0.0005 5 7 3.5357 0.8325 -0.0006 6 6 3.6548 -0.6312 -0.0016 7 6 4.3780 -1.1067 -1.2569 8 6 4.4621 -2.6352 -1.2529 9 6 5.2140 -3.1000 -0.0039 10 7 5.3055 -4.5622 -0.0051 11 6 6.3019 -5.1756 0.6639 12 8 7.1259 -4.5148 1.2684 13 6 6.3931 -6.6395 0.6632 14 6 7.3496 -7.3966 1.3056 15 6 7.0598 -8.7381 1.0377 16 6 7.8395 -9.9298 1.5303 17 8 9.1825 -9.8531 1.0478 18 14 7.0437 -11.4942 0.9058 19 6 5.9505 -8.7766 0.2613 20 7 5.5355 -7.5079 0.0266 21 6 4.4631 -2.6370 1.2462 22 6 4.3789 -1.1085 1.2524 23 6 2.2233 -1.1159 -0.0005 24 8 1.8376 -2.2652 -0.0014 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5135 -0.8902 27 1 -0.3633 -0.5143 0.8897 28 1 4.2629 1.4745 -0.0003 29 1 5.3840 -0.6878 -1.2768 30 1 3.8298 -0.7756 -2.1389 31 1 4.9929 -2.9723 -2.1433 32 1 3.4561 -3.0546 -1.2486 33 1 6.2171 -2.6733 -0.0040 34 1 4.6489 -5.0888 -0.4872 35 1 8.1697 -7.0238 1.9013 36 1 7.8449 -9.9351 2.6203 37 1 9.7435 -10.5895 1.3271 38 1 5.6571 -11.6016 1.4266 39 1 7.0302 -11.4993 -0.5792 40 1 5.4742 -9.6720 -0.1098 41 1 4.7630 -7.2540 -0.5023 42 1 3.4570 -3.0564 1.2420 43 1 4.9945 -2.9754 2.1356 44 1 5.3850 -0.6897 1.2722 45 1 3.8315 -0.7787 2.1354 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_10543058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:05:07 Heat of formation + Delta-G solvation = -58.483056 kcal Electronic energy + Delta-G solvation = -31177.006455 eV Core-core repulsion = 26776.645992 eV Total energy + Delta-G solvation = -4400.360463 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.90467 -42.58403 -40.81990 -39.96456 -38.75860 -37.57277 -37.30301 -36.07222 -34.29906 -32.74244 -32.18298 -31.08665 -29.63290 -29.00959 -26.53318 -25.34731 -24.28823 -24.05936 -22.99062 -22.44755 -21.35918 -20.92762 -20.47641 -19.70558 -19.19150 -18.25754 -18.08887 -17.76897 -17.45172 -17.14867 -16.72281 -16.60287 -16.42876 -15.94909 -15.79426 -15.43178 -15.15861 -15.10664 -15.02098 -14.77030 -14.54002 -14.34446 -14.20114 -14.08298 -13.86410 -13.75237 -13.57202 -13.46908 -13.42004 -12.95152 -12.48073 -12.35846 -12.29052 -12.02882 -11.93951 -11.87932 -11.34680 -10.98040 -10.95349 -10.56184 -10.33031 -10.31114 -9.93107 -9.41275 -4.86792 0.24494 0.40992 1.09660 1.31322 1.46276 1.76756 1.79568 1.82984 1.95770 2.02060 2.06560 2.18824 2.73428 3.30049 3.35161 3.59834 3.63938 3.72989 3.87584 3.89259 3.91604 4.04254 4.06409 4.11827 4.24748 4.30271 4.33810 4.38210 4.40792 4.49965 4.52259 4.63076 4.68234 4.75117 4.79645 4.84438 4.89360 4.93263 4.97281 5.09382 5.12265 5.32849 5.47002 5.62943 5.69777 5.85978 6.21659 6.23532 6.40232 6.96002 6.98485 7.02389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.699 3.301 4 O -0.580 6.580 5 N -0.701 5.701 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.127 4.127 9 C 0.150 3.850 10 N -0.711 5.711 11 C 0.593 3.407 12 O -0.564 6.564 13 C -0.064 4.064 14 C -0.101 4.101 15 C -0.189 4.189 16 C -0.056 4.056 17 O -0.571 6.571 18 Si 0.786 3.214 19 C 0.030 3.970 20 N -0.516 5.516 21 C -0.132 4.132 22 C -0.105 4.105 23 C 0.529 3.471 24 O -0.471 6.471 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.452 0.548 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.408 0.592 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.400 0.600 38 H -0.282 1.282 39 H -0.291 1.291 40 H 0.187 0.813 41 H 0.436 0.564 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -5.583 -2.209 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C 0.400 3.600 4 O -0.456 6.456 5 N -0.365 5.365 6 C 0.037 3.963 7 C -0.144 4.144 8 C -0.165 4.165 9 C 0.046 3.954 10 N -0.362 5.362 11 C 0.381 3.619 12 O -0.443 6.443 13 C -0.177 4.177 14 C -0.128 4.128 15 C -0.195 4.195 16 C -0.165 4.165 17 O -0.380 6.380 18 Si 0.689 3.311 19 C -0.107 4.107 20 N -0.114 5.114 21 C -0.171 4.171 22 C -0.144 4.144 23 C 0.317 3.683 24 O -0.341 6.341 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.300 0.700 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.244 0.756 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.250 0.750 38 H -0.208 1.208 39 H -0.218 1.218 40 H 0.204 0.796 41 H 0.277 0.723 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.827 -4.814 -2.606 5.771 hybrid contribution -0.527 0.899 -0.064 1.044 sum -2.354 -3.915 -2.670 5.291 Atomic orbital electron populations 1.22043 0.74125 1.05426 1.04626 1.46462 1.10438 1.07895 1.68244 1.16088 0.83042 0.83751 0.77163 1.91019 1.76000 1.21805 1.56775 1.45540 1.05919 1.07462 1.77623 1.21194 0.93435 0.80974 1.00696 1.21639 1.02821 0.95738 0.94169 1.21874 1.02151 0.95058 0.97424 1.21039 1.00421 0.78723 0.95224 1.45780 1.29317 1.08179 1.52886 1.17071 0.81086 0.85137 0.78561 1.90842 1.42395 1.65684 1.45338 1.20325 0.98770 0.89815 1.08790 1.21260 0.98524 0.92289 1.00688 1.19238 0.99369 0.94573 1.06362 1.24363 0.86921 1.03789 1.01451 1.86458 1.21441 1.52861 1.77251 0.93879 0.79381 0.80307 0.77512 1.21978 0.98617 0.88117 1.02006 1.41797 1.24333 1.05035 1.40185 1.21961 1.01760 0.94837 0.98530 1.21600 1.02505 0.95802 0.94464 1.20954 0.88817 0.84574 0.73976 1.90745 1.79405 1.18033 1.45937 0.88715 0.89146 0.89483 0.70011 0.86910 0.89468 0.88553 0.90003 0.89373 0.75575 0.84605 0.90306 0.74984 1.20812 1.21823 0.79604 0.72295 0.90668 0.91820 0.87343 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.14 10.89 127.77 1.39 1.25 16 2 N -0.58 -0.70 3.01 -796.77 -2.40 -3.10 16 3 C 0.70 2.40 8.63 179.37 1.55 3.95 16 4 O -0.58 -6.61 17.24 -3.83 -0.07 -6.68 16 5 N -0.70 2.72 5.88 -442.70 -2.60 0.11 16 6 C 0.13 -0.60 1.01 2.57 0.00 -0.60 16 7 C -0.10 0.85 5.10 30.45 0.16 1.00 16 8 C -0.13 0.88 5.14 30.63 0.16 1.04 16 9 C 0.15 -0.43 2.44 45.00 0.11 -0.32 16 10 N -0.71 1.22 5.07 -446.45 -2.27 -1.05 16 11 C 0.59 3.58 7.75 86.44 0.67 4.25 16 12 O -0.56 -7.81 16.55 -4.33 -0.07 -7.89 16 13 C -0.06 -0.33 7.06 40.34 0.28 -0.05 16 14 C -0.10 -0.89 10.59 22.57 0.24 -0.66 16 15 C -0.19 -1.01 5.47 -20.12 -0.11 -1.12 16 16 C -0.06 -0.03 3.01 71.23 0.21 0.18 16 17 O -0.57 -1.18 12.86 -148.98 -1.92 -3.09 16 18 Si 0.79 -3.19 30.59 68.60 2.10 -1.09 16 19 C 0.03 0.03 10.45 83.48 0.87 0.90 16 20 N -0.52 0.74 5.99 -183.62 -1.10 -0.36 16 21 C -0.13 0.18 5.25 30.63 0.16 0.34 16 22 C -0.10 0.48 5.10 30.45 0.16 0.64 16 23 C 0.53 -0.01 6.53 87.77 0.57 0.56 16 24 O -0.47 -1.38 13.94 -2.88 -0.04 -1.42 16 25 H 0.09 -0.08 7.45 -2.39 -0.02 -0.10 16 26 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.45 -3.69 8.96 -92.71 -0.83 -4.52 16 29 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 30 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.08 -0.41 6.11 -2.39 -0.01 -0.42 16 33 H 0.09 -0.06 7.58 -2.38 -0.02 -0.07 16 34 H 0.41 -2.94 7.73 -92.71 -0.72 -3.66 16 35 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 37 H 0.40 -3.50 8.74 -74.06 -0.65 -4.15 16 38 H -0.28 0.02 7.11 99.48 0.71 0.73 16 39 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 40 H 0.19 -0.66 6.19 -2.91 -0.02 -0.68 16 41 H 0.44 -4.01 8.19 -92.71 -0.76 -4.77 16 42 H 0.07 0.05 6.11 -2.39 -0.01 0.04 16 43 H 0.06 0.17 8.14 -2.39 -0.02 0.16 16 44 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -30.25 367.97 -3.76 -34.01 By element: Atomic # 1 Polarization: -19.00 SS G_CDS: -1.82 Total: -20.82 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.42 Total: 11.38 kcal Atomic # 7 Polarization: 3.97 SS G_CDS: -8.37 Total: -4.40 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -2.09 Total: -19.08 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.10 Total: -1.09 kcal Total: -30.25 -3.76 -34.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_10543058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.472 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds