Wall clock time and date at job start Sun Mar 7 2021 15:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35453 * 125.56687 * 2 1 4 4 C 1.50706 * 126.06748 * 0.05979 * 3 2 1 5 5 O 1.42897 * 109.47380 * 296.40454 * 4 3 2 6 6 Si 1.86305 * 109.46771 * 56.40306 * 4 3 2 7 7 C 1.39834 * 107.86691 * 180.02562 * 3 2 1 8 8 C 1.50703 * 126.45662 * 180.02562 * 7 3 2 9 9 C 1.37870 * 107.08743 * 359.97438 * 7 3 2 10 10 C 1.46673 * 126.23703 * 180.02562 * 9 7 3 11 11 O 1.21692 * 119.99852 * 0.02562 * 10 9 7 12 12 N 1.34780 * 120.00130 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99915 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.45068 * 205.00391 * 13 12 10 15 15 C 1.53093 * 109.41124 * 179.56686 * 14 13 12 16 16 C 1.52481 * 109.51931 * 59.16975 * 15 14 13 17 17 C 1.52467 * 110.72356 * 301.24139 * 16 15 14 18 18 C 1.52988 * 109.45784 * 84.89986 * 13 12 10 19 19 N 1.46862 * 110.47918 * 63.97622 * 16 15 14 20 20 C 1.34679 * 106.41333 * 118.55833 * 19 16 15 21 21 O 1.21534 * 123.78375 * 180.02562 * 20 19 16 22 22 N 1.33868 * 112.42130 * 0.26796 * 20 19 16 23 23 C 1.46505 * 124.19023 * 179.69093 * 22 20 19 24 24 C 1.34912 * 111.61127 * 359.53698 * 22 20 19 25 25 O 1.21237 * 127.25711 * 180.17944 * 24 22 20 26 26 N 1.35536 * 125.56481 * 180.34217 * 2 1 3 27 27 H 1.09000 * 109.47131 * 94.30958 * 1 2 3 28 28 H 1.08992 * 109.47539 * 214.31296 * 1 2 3 29 29 H 1.09004 * 109.46855 * 334.31437 * 1 2 3 30 30 H 1.08995 * 109.46807 * 176.39908 * 4 3 2 31 31 H 0.96698 * 113.99771 * 59.99364 * 5 4 3 32 32 H 1.48501 * 109.99849 * 63.72890 * 6 4 3 33 33 H 1.48498 * 109.99902 * 185.04955 * 6 4 3 34 34 H 1.08994 * 109.47570 * 269.98097 * 8 7 3 35 35 H 1.09002 * 109.47247 * 29.98807 * 8 7 3 36 36 H 1.09005 * 109.46779 * 149.98316 * 8 7 3 37 37 H 0.96997 * 119.99957 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.43716 * 324.94702 * 13 12 10 39 39 H 1.08997 * 109.48672 * 59.58569 * 14 13 12 40 40 H 1.09000 * 109.48204 * 299.54547 * 14 13 12 41 41 H 1.08995 * 109.46553 * 299.15574 * 15 14 13 42 42 H 1.09006 * 109.46481 * 179.18599 * 15 14 13 43 43 H 1.09003 * 109.46571 * 178.76939 * 17 16 15 44 44 H 1.08999 * 109.46371 * 298.73308 * 17 16 15 45 45 H 1.08998 * 109.48194 * 300.40921 * 18 13 12 46 46 H 1.09008 * 109.48139 * 60.44320 * 18 13 12 47 47 H 0.96997 * 126.78974 * 298.55446 * 19 16 15 48 48 H 1.08997 * 109.46954 * 0.02747 * 23 22 20 49 49 H 1.09006 * 109.46362 * 120.02433 * 23 22 20 50 50 H 1.09001 * 109.47345 * 240.02487 * 23 22 20 51 51 H 0.97000 * 125.67856 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8200 2.5321 0.0013 5 8 1.1002 2.7962 -1.2046 6 14 0.7031 2.8143 1.4655 7 6 3.6270 0.6767 -0.0006 8 6 4.8486 1.5592 -0.0003 9 6 3.6122 -0.7019 -0.0004 10 6 4.7859 -1.5816 -0.0003 11 8 5.9048 -1.1031 0.0001 12 7 4.6252 -2.9197 0.0005 13 6 5.7976 -3.7983 0.0011 14 6 5.4213 -5.1505 -0.6079 15 6 6.6497 -6.0641 -0.6167 16 6 7.1546 -6.2526 0.8097 17 6 7.5135 -4.9101 1.4369 18 6 6.2821 -4.0004 1.4381 19 7 6.1485 -6.9475 1.6232 20 6 6.7173 -8.0983 2.0306 21 8 6.1555 -8.9200 2.7280 22 7 7.9725 -8.2331 1.5854 23 6 8.8315 -9.3828 1.8799 24 6 8.3473 -7.1805 0.8294 25 8 9.4172 -7.0120 0.2846 26 7 2.2953 -1.1025 -0.0066 27 1 -0.3633 -0.0772 -1.0248 28 1 -0.3634 -0.8487 0.5792 29 1 -0.3633 0.9262 0.4454 30 1 2.6789 3.2000 0.0655 31 1 0.3211 2.2369 -1.3281 32 1 1.4640 2.6305 2.7275 33 1 0.1315 4.1838 1.4118 34 1 5.1431 1.7724 -1.0278 35 1 4.6220 2.4931 0.5141 36 1 5.6643 1.0502 0.5133 37 1 3.7333 -3.3011 0.0014 38 1 6.5925 -3.3428 -0.5894 39 1 5.0699 -5.0041 -1.6293 40 1 4.6311 -5.6095 -0.0138 41 1 7.4344 -5.6117 -1.2229 42 1 6.3790 -7.0327 -1.0372 43 1 7.8506 -5.0664 2.4616 44 1 8.3107 -4.4413 0.8600 45 1 6.5434 -3.0356 1.8728 46 1 5.4898 -4.4622 2.0274 47 1 5.2519 -6.6386 1.8269 48 1 8.2887 -10.0910 2.5059 49 1 9.1201 -9.8687 0.9477 50 1 9.7247 -9.0441 2.4048 51 1 1.9834 -2.0210 -0.0124 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:05:22 Heat of formation + Delta-G solvation = -73.124977 kcal Electronic energy + Delta-G solvation = -35569.361451 eV Core-core repulsion = 30857.290829 eV Total energy + Delta-G solvation = -4712.070623 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.183 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.86618 -42.65170 -40.74089 -39.88452 -39.11021 -37.72939 -37.11020 -36.03513 -34.24971 -33.78770 -32.62933 -32.15664 -30.35276 -29.22826 -28.89703 -27.49279 -26.39469 -25.01701 -24.19575 -23.55969 -22.27600 -21.72932 -21.20067 -20.65127 -20.29856 -19.35814 -19.04192 -17.99370 -17.84276 -17.59853 -17.24836 -16.82030 -16.64124 -16.58756 -16.45972 -16.09666 -15.74001 -15.52373 -15.47854 -15.34834 -15.11362 -14.74304 -14.41690 -14.39928 -14.20850 -14.10067 -13.97940 -13.81152 -13.59931 -13.58958 -13.47735 -13.38421 -13.20408 -13.11515 -13.05612 -12.62724 -12.38183 -12.36753 -12.08907 -12.06207 -11.95860 -11.68435 -11.32035 -11.02908 -10.99669 -10.57437 -10.52432 -10.22508 -9.53183 -8.96240 -4.99209 0.37949 0.40587 1.11090 1.23311 1.54569 1.75873 1.81628 1.92378 1.98880 2.03765 2.14827 2.28273 2.76994 3.28100 3.36838 3.65717 3.68169 3.81668 3.90033 3.91950 3.95034 4.00466 4.04936 4.06993 4.12378 4.26815 4.34556 4.35179 4.36740 4.42039 4.51430 4.54306 4.60442 4.62325 4.71027 4.74506 4.75850 4.84617 4.88513 4.92829 4.95880 4.97153 5.04091 5.13007 5.15218 5.22132 5.29425 5.40111 5.70291 5.73319 5.82577 5.86825 6.21709 6.41233 6.59881 6.84381 6.97797 7.12735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.232 4.232 4 C -0.038 4.038 5 O -0.558 6.558 6 Si 0.768 3.232 7 C -0.083 4.083 8 C -0.091 4.091 9 C -0.075 4.075 10 C 0.590 3.410 11 O -0.564 6.564 12 N -0.710 5.710 13 C 0.145 3.855 14 C -0.113 4.113 15 C -0.107 4.107 16 C 0.133 3.867 17 C -0.107 4.107 18 C -0.119 4.119 19 N -0.695 5.695 20 C 0.701 3.299 21 O -0.577 6.577 22 N -0.584 5.584 23 C 0.078 3.922 24 C 0.529 3.471 25 O -0.486 6.486 26 N -0.514 5.514 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.389 0.611 32 H -0.301 1.301 33 H -0.293 1.293 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.450 0.550 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -4.220 -1.424 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.029 4.029 3 C -0.238 4.238 4 C -0.148 4.148 5 O -0.365 6.365 6 Si 0.674 3.326 7 C -0.092 4.092 8 C -0.148 4.148 9 C -0.188 4.188 10 C 0.379 3.621 11 O -0.443 6.443 12 N -0.362 5.362 13 C 0.040 3.960 14 C -0.151 4.151 15 C -0.146 4.146 16 C 0.042 3.958 17 C -0.146 4.146 18 C -0.158 4.158 19 N -0.361 5.361 20 C 0.402 3.598 21 O -0.454 6.454 22 N -0.330 5.330 23 C -0.063 4.063 24 C 0.316 3.684 25 O -0.356 6.356 26 N -0.113 5.113 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.239 0.761 32 H -0.229 1.229 33 H -0.221 1.221 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.298 0.702 48 H 0.116 0.884 49 H 0.107 0.893 50 H 0.104 0.896 51 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.103 -3.629 -0.717 8.908 hybrid contribution 0.574 -0.164 0.051 0.599 sum -7.530 -3.793 -0.666 8.457 Atomic orbital electron populations 1.20867 0.84008 1.05042 1.05802 1.20744 0.95253 0.84712 1.02216 1.19562 0.92651 0.95621 1.15964 1.24445 1.00339 0.93061 0.97002 1.86501 1.44691 1.63955 1.41396 0.94337 0.83414 0.81889 0.72970 1.19969 0.95278 0.92087 1.01854 1.20289 0.94841 0.97892 1.01811 1.19870 0.84034 0.93393 1.21465 1.17140 0.87034 0.82254 0.75697 1.90831 1.25759 1.75844 1.51879 1.45692 1.10590 1.04492 1.75405 1.21037 0.88114 0.90435 0.96395 1.21744 0.97642 0.92126 1.03568 1.21650 0.99591 1.02243 0.91155 1.21108 0.86071 0.93184 0.95441 1.21599 0.99677 0.91344 1.01953 1.21831 0.97321 0.99505 0.97101 1.45493 1.17670 1.19087 1.53823 1.16039 0.80938 0.83175 0.79641 1.91021 1.66280 1.46282 1.41768 1.46455 1.15196 1.22957 1.48359 1.22051 0.94138 0.86314 1.03783 1.21019 0.88760 0.82054 0.76544 1.90824 1.24828 1.75753 1.44190 1.41659 1.03865 1.09315 1.56475 0.87057 0.87459 0.88551 0.88969 0.76081 1.22887 1.22092 0.92006 0.91885 0.91483 0.75207 0.90567 0.88570 0.88643 0.88884 0.89131 0.90434 0.89315 0.92021 0.89525 0.70190 0.88413 0.89304 0.89575 0.72319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.62 8.94 71.23 0.64 2.26 16 2 C 0.09 -0.61 6.75 41.34 0.28 -0.33 16 3 C -0.23 -0.23 4.67 -20.12 -0.09 -0.32 16 4 C -0.04 -0.06 2.89 71.24 0.21 0.15 16 5 O -0.56 -0.63 12.88 -148.98 -1.92 -2.55 16 6 Si 0.77 -0.96 29.29 68.60 2.01 1.05 16 7 C -0.08 -0.48 6.21 -19.56 -0.12 -0.60 16 8 C -0.09 -0.74 9.53 71.24 0.68 -0.06 16 9 C -0.08 -0.09 7.06 40.35 0.28 0.19 16 10 C 0.59 1.41 7.75 86.44 0.67 2.08 16 11 O -0.56 -6.27 14.46 -4.32 -0.06 -6.33 16 12 N -0.71 4.95 5.07 -446.51 -2.26 2.69 16 13 C 0.14 -0.98 2.44 44.99 0.11 -0.87 16 14 C -0.11 1.38 5.28 30.63 0.16 1.54 16 15 C -0.11 0.91 4.98 30.45 0.15 1.06 16 16 C 0.13 -0.67 0.84 2.57 0.00 -0.67 16 17 C -0.11 0.50 4.98 30.45 0.15 0.65 16 18 C -0.12 0.72 5.38 30.62 0.16 0.89 16 19 N -0.70 3.95 5.23 -442.69 -2.31 1.64 16 20 C 0.70 1.45 8.63 179.37 1.55 3.00 16 21 O -0.58 -5.56 17.24 -3.82 -0.07 -5.63 16 22 N -0.58 -0.73 3.01 -796.76 -2.40 -3.13 16 23 C 0.08 -0.11 10.89 127.77 1.39 1.28 16 24 C 0.53 0.69 6.95 87.77 0.61 1.30 16 25 O -0.49 -3.50 17.86 -2.90 -0.05 -3.55 16 26 N -0.51 3.98 5.99 -171.94 -1.03 2.95 16 27 H 0.11 -2.13 8.14 -2.39 -0.02 -2.15 16 28 H 0.11 -2.15 8.14 -2.39 -0.02 -2.17 16 29 H 0.10 -1.64 4.06 -2.38 -0.01 -1.65 16 30 H 0.09 0.47 6.77 -2.39 -0.02 0.45 16 31 H 0.39 -3.36 7.37 -74.06 -0.55 -3.91 16 32 H -0.30 -1.89 7.11 99.48 0.71 -1.19 16 33 H -0.29 -1.63 7.11 99.48 0.71 -0.92 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.40 7.24 -2.39 -0.02 0.38 16 36 H 0.07 0.73 6.48 -2.38 -0.02 0.71 16 37 H 0.41 -5.88 7.73 -92.71 -0.72 -6.60 16 38 H 0.08 -0.10 7.58 -2.39 -0.02 -0.11 16 39 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 40 H 0.10 -1.56 7.33 -2.39 -0.02 -1.57 16 41 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 43 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.09 -0.24 8.14 -2.39 -0.02 -0.25 16 45 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.09 -0.85 7.33 -2.38 -0.02 -0.87 16 47 H 0.45 -4.73 7.70 -92.71 -0.71 -5.44 16 48 H 0.10 -0.11 7.45 -2.39 -0.02 -0.13 16 49 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 50 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 51 H 0.44 -7.00 8.19 -92.71 -0.76 -7.76 16 Total: 0.00 -34.76 404.20 -2.93 -37.69 By element: Atomic # 1 Polarization: -34.70 SS G_CDS: -1.67 Total: -36.37 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.83 Total: 11.53 kcal Atomic # 7 Polarization: 12.16 SS G_CDS: -8.01 Total: 4.15 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -2.10 Total: -18.06 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.01 Total: 1.05 kcal Total: -34.76 -2.93 -37.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.434 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds