Wall clock time and date at job start Sun Mar 7 2021 15:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33864 * 124.19297 * 2 1 4 4 O 1.21543 * 123.79115 * 0.03179 * 3 2 1 5 5 N 1.34668 * 112.41977 * 179.76467 * 3 2 1 6 6 C 1.46862 * 106.42757 * 0.22691 * 5 3 2 7 7 C 1.52461 * 110.48834 * 241.45833 * 6 5 3 8 8 C 1.53083 * 109.58419 * 178.66514 * 7 6 5 9 9 C 1.53011 * 109.41838 * 59.14377 * 8 7 6 10 10 N 1.46499 * 109.46522 * 179.51622 * 9 8 7 11 11 C 1.34778 * 120.00316 * 275.04319 * 10 9 8 12 12 O 1.21591 * 119.99717 * 359.97438 * 11 10 9 13 13 C 1.47571 * 120.00059 * 179.97438 * 11 10 9 14 14 C 1.40207 * 119.83221 * 359.97438 * 13 11 10 15 15 C 1.36238 * 120.38016 * 179.97438 * 14 13 11 16 16 C 1.39877 * 119.95894 * 0.02562 * 15 14 13 17 17 C 1.46253 * 133.84278 * 180.02562 * 16 15 14 18 18 C 1.50700 * 126.48406 * 359.97438 * 17 16 15 19 19 O 1.42900 * 109.46979 * 75.00157 * 18 17 16 20 20 Si 1.86298 * 109.47191 * 195.00451 * 18 17 16 21 21 C 1.34457 * 107.03648 * 179.97438 * 17 16 15 22 22 N 1.36561 * 109.98276 * 0.02562 * 21 17 16 23 23 C 1.37828 * 109.86090 * 359.97438 * 22 21 17 24 24 C 1.38649 * 133.37739 * 180.32700 * 23 22 21 25 25 C 1.52997 * 109.50933 * 299.53128 * 9 8 7 26 26 C 1.52477 * 110.48719 * 118.54255 * 6 5 3 27 27 C 1.34915 * 124.19445 * 180.18243 * 2 1 3 28 28 O 1.21231 * 127.25540 * 359.97438 * 27 2 1 29 29 H 1.08994 * 109.47505 * 0.02919 * 1 2 3 30 30 H 1.09004 * 109.46708 * 120.03202 * 1 2 3 31 31 H 1.09001 * 109.47423 * 240.02362 * 1 2 3 32 32 H 0.97002 * 126.79302 * 180.22541 * 5 3 2 33 33 H 1.09001 * 109.45356 * 298.69746 * 7 6 5 34 34 H 1.08995 * 109.45664 * 58.62910 * 7 6 5 35 35 H 1.09000 * 109.47786 * 299.16452 * 8 7 6 36 36 H 1.08993 * 109.48162 * 179.13373 * 8 7 6 37 37 H 1.09005 * 109.46270 * 59.54186 * 9 8 7 38 38 H 0.97004 * 119.99756 * 95.03680 * 10 9 8 39 39 H 1.08000 * 119.81153 * 0.02647 * 14 13 11 40 40 H 1.07996 * 120.01717 * 179.97438 * 15 14 13 41 41 H 1.09006 * 109.47009 * 315.00385 * 18 17 16 42 42 H 0.96701 * 114.00040 * 60.00327 * 19 18 17 43 43 H 1.48502 * 110.00190 * 58.68021 * 20 18 17 44 44 H 1.48496 * 110.00059 * 179.97438 * 20 18 17 45 45 H 1.08001 * 125.00782 * 180.02562 * 21 17 16 46 46 H 0.97005 * 125.06936 * 180.02562 * 22 21 17 47 47 H 1.08003 * 120.17097 * 359.93733 * 24 23 22 48 48 H 1.08992 * 109.48152 * 300.48271 * 25 9 8 49 49 H 1.09005 * 109.48621 * 180.45305 * 25 9 8 50 50 H 1.08997 * 109.45140 * 301.37437 * 26 6 5 51 51 H 1.09005 * 109.44254 * 61.29636 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7617 2.2341 0.0006 5 7 3.5357 0.8325 0.0051 6 6 3.6548 -0.6313 0.0033 7 6 4.3730 -1.1098 1.2602 8 6 4.4564 -2.6383 1.2531 9 6 5.2126 -3.1007 0.0059 10 7 5.3031 -4.5629 0.0040 11 6 6.2958 -5.1777 0.6771 12 8 7.1167 -4.5186 1.2856 13 6 6.3865 -6.6506 0.6756 14 6 5.4377 -7.4071 -0.0268 15 6 5.5112 -8.7675 -0.0362 16 6 6.5374 -9.4164 0.6583 17 6 6.9004 -10.8200 0.8507 18 6 6.1789 -12.0174 0.2880 19 8 6.4690 -12.1365 -1.1062 20 14 6.7443 -13.5559 1.1736 21 6 7.9997 -10.8401 1.6247 22 7 8.3693 -9.5647 1.9436 23 6 7.4961 -8.6665 1.3685 24 6 7.4168 -7.2823 1.3687 25 6 4.4670 -2.6343 -1.2460 26 6 4.3836 -1.1058 -1.2491 27 6 2.2233 -1.1159 -0.0036 28 8 1.8376 -2.2652 -0.0068 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5144 -0.8898 31 1 -0.3634 -0.5135 0.8902 32 1 4.2629 1.4744 0.0092 33 1 5.3793 -0.6915 1.2848 34 1 3.8218 -0.7804 2.1409 35 1 3.4501 -3.0571 1.2441 36 1 4.9835 -2.9777 2.1446 37 1 6.2160 -2.6749 0.0109 38 1 4.6483 -5.0887 -0.4817 39 1 4.6446 -6.9085 -0.5642 40 1 4.7770 -9.3444 -0.5788 41 1 5.1049 -11.8925 0.4262 42 1 7.4087 -12.2506 -1.3041 43 1 6.4771 -13.4313 2.6290 44 1 6.0396 -14.7438 0.6282 45 1 8.5146 -11.7332 1.9466 46 1 9.1329 -9.3264 2.4923 47 1 8.1484 -6.6967 1.9055 48 1 3.4608 -3.0532 -1.2470 49 1 5.0018 -2.9708 -2.1342 50 1 3.8398 -0.7736 -2.1334 51 1 5.3900 -0.6873 -1.2638 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17849352_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:05:40 Heat of formation + Delta-G solvation = -38.076393 kcal Electronic energy + Delta-G solvation = -37410.766107 eV Core-core repulsion = 32471.074503 eV Total energy + Delta-G solvation = -4939.691604 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.167 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.84096 -42.47485 -41.02122 -39.94364 -38.83353 -37.87062 -37.45959 -37.07979 -35.95593 -34.11643 -33.24402 -32.25410 -30.98828 -30.70180 -29.39418 -28.97284 -26.52770 -25.45452 -24.42130 -24.21726 -23.60180 -23.05030 -22.46346 -21.30724 -20.85306 -20.57232 -19.37591 -19.13111 -18.40680 -18.01166 -17.88502 -17.48813 -17.20182 -16.92312 -16.66799 -16.47689 -16.23810 -16.16503 -15.88862 -15.64127 -15.57071 -15.37587 -15.06531 -14.99149 -14.77372 -14.72730 -14.54153 -14.30634 -14.19490 -14.00827 -13.86280 -13.77862 -13.60844 -13.54120 -13.13627 -12.86330 -12.64284 -12.43173 -12.30909 -12.23396 -12.21801 -11.92904 -11.88287 -11.76471 -10.91228 -10.88581 -10.85160 -10.74472 -10.54098 -10.35510 -10.07731 -9.34355 -8.80616 -5.10685 -0.25057 0.41049 0.50785 1.12889 1.28432 1.37359 1.61743 1.86844 1.92709 1.96366 1.97111 2.03221 2.22323 2.75976 2.95080 3.25039 3.29010 3.54782 3.57399 3.64362 3.74015 3.76530 3.85507 3.87099 3.88894 4.02690 4.08459 4.12774 4.19380 4.27098 4.30208 4.36341 4.42303 4.43236 4.45856 4.47909 4.52484 4.57073 4.62265 4.67816 4.72185 4.75143 4.88599 4.91218 4.99139 5.06889 5.19259 5.25769 5.43528 5.45072 5.53558 5.61784 5.67455 5.93262 5.99558 6.28317 6.36467 6.51810 6.64946 7.04210 7.25494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.581 5.581 3 C 0.702 3.298 4 O -0.539 6.539 5 N -0.719 5.719 6 C 0.121 3.879 7 C -0.108 4.108 8 C -0.138 4.138 9 C 0.150 3.850 10 N -0.720 5.720 11 C 0.565 3.435 12 O -0.539 6.539 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.073 4.073 16 C -0.063 4.063 17 C -0.211 4.211 18 C -0.030 4.030 19 O -0.542 6.542 20 Si 0.684 3.316 21 C 0.077 3.923 22 N -0.584 5.584 23 C 0.081 3.919 24 C -0.057 4.057 25 C -0.136 4.136 26 C -0.107 4.107 27 C 0.532 3.468 28 O -0.454 6.454 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.442 0.558 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.377 0.623 43 H -0.256 1.256 44 H -0.254 1.254 45 H 0.179 0.821 46 H 0.422 0.578 47 H 0.136 0.864 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -3.602 -0.823 5.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.402 3.598 4 O -0.412 6.412 5 N -0.383 5.383 6 C 0.030 3.970 7 C -0.147 4.147 8 C -0.177 4.177 9 C 0.045 3.955 10 N -0.372 5.372 11 C 0.354 3.646 12 O -0.416 6.416 13 C -0.126 4.126 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.219 4.219 18 C -0.141 4.141 19 O -0.347 6.347 20 Si 0.586 3.414 21 C -0.052 4.052 22 N -0.186 5.186 23 C -0.025 4.025 24 C -0.078 4.078 25 C -0.174 4.174 26 C -0.146 4.146 27 C 0.318 3.682 28 O -0.323 6.323 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.129 0.871 42 H 0.224 0.776 43 H -0.181 1.181 44 H -0.179 1.179 45 H 0.195 0.805 46 H 0.260 0.740 47 H 0.154 0.846 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.100 0.900 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.005 -3.749 0.145 4.807 hybrid contribution -0.120 0.692 0.069 0.705 sum 2.885 -3.058 0.214 4.209 Atomic orbital electron populations 1.21908 0.74721 1.05360 1.03681 1.46346 1.09794 1.07985 1.68633 1.15943 0.82227 0.84183 0.77428 1.91047 1.75168 1.20282 1.54720 1.45599 1.06688 1.07080 1.78921 1.21179 0.94576 0.81411 0.99859 1.21617 1.01615 0.96873 0.94634 1.22069 1.02715 0.93795 0.99128 1.20936 1.00366 0.79733 0.94420 1.45897 1.30568 1.07325 1.53382 1.18141 0.80694 0.87333 0.78470 1.90786 1.40854 1.66660 1.43347 1.19424 0.97996 0.92393 1.02787 1.20704 0.98728 0.93845 0.99991 1.20208 0.97123 0.93713 0.98102 1.19174 0.96035 0.92295 0.99333 1.20732 1.00189 0.93747 1.07215 1.24333 1.01547 1.01489 0.86757 1.86507 1.30550 1.95752 1.21878 0.95290 0.90533 0.76769 0.78811 1.21745 0.97020 0.87377 0.99052 1.41717 1.26713 1.04625 1.45585 1.18078 0.93440 0.91087 0.99925 1.20070 0.98366 0.90193 0.99151 1.21939 1.02885 0.94589 0.98021 1.21592 1.01746 0.96290 0.94982 1.20649 0.88053 0.84921 0.74547 1.90763 1.78908 1.17514 1.45066 0.88314 0.90238 0.90254 0.71308 0.89079 0.90329 0.89710 0.90132 0.88940 0.76169 0.85590 0.85235 0.87138 0.77591 1.18103 1.17896 0.80456 0.74018 0.84635 0.89331 0.89849 0.90040 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.08 10.89 59.85 0.65 0.58 16 2 N -0.58 -0.42 3.01 -128.24 -0.39 -0.81 16 3 C 0.70 1.24 8.63 -87.83 -0.76 0.48 16 4 O -0.54 -2.91 17.24 5.33 0.09 -2.82 16 5 N -0.72 1.08 5.88 -53.87 -0.32 0.76 16 6 C 0.12 -0.22 1.01 -133.10 -0.13 -0.35 16 7 C -0.11 0.21 5.10 -26.96 -0.14 0.07 16 8 C -0.14 0.08 5.25 -26.68 -0.14 -0.06 16 9 C 0.15 -0.15 2.44 -67.93 -0.17 -0.32 16 10 N -0.72 0.30 5.03 -54.83 -0.28 0.03 16 11 C 0.57 1.31 7.72 -12.45 -0.10 1.21 16 12 O -0.54 -2.91 15.97 5.29 0.08 -2.83 16 13 C -0.12 -0.20 5.87 -104.95 -0.62 -0.82 16 14 C -0.11 -0.03 9.46 -39.56 -0.37 -0.41 16 15 C -0.07 -0.08 10.03 -39.69 -0.40 -0.48 16 16 C -0.06 -0.10 6.35 -105.05 -0.67 -0.77 16 17 C -0.21 0.03 5.57 -102.74 -0.57 -0.54 16 18 C -0.03 0.02 3.06 36.01 0.11 0.13 16 19 O -0.54 0.00 12.88 -35.23 -0.45 -0.45 16 20 Si 0.68 -1.41 30.75 -169.99 -5.23 -6.63 16 21 C 0.08 -0.17 10.43 -16.78 -0.17 -0.35 16 22 N -0.58 0.95 6.07 -10.68 -0.06 0.88 16 23 C 0.08 0.09 7.26 -84.00 -0.61 -0.52 16 24 C -0.06 -0.10 9.61 -39.03 -0.37 -0.47 16 25 C -0.14 0.34 5.14 -26.69 -0.14 0.20 16 26 C -0.11 0.33 5.10 -26.96 -0.14 0.19 16 27 C 0.53 0.19 6.53 -10.71 -0.07 0.12 16 28 O -0.45 -0.86 13.94 5.60 0.08 -0.78 16 29 H 0.10 -0.07 7.45 -51.93 -0.39 -0.46 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.44 -1.55 8.96 -40.82 -0.37 -1.92 16 33 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 34 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.08 0.04 6.11 -51.93 -0.32 -0.27 16 36 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.09 -0.01 7.58 -51.93 -0.39 -0.40 16 38 H 0.40 -0.92 6.59 -40.82 -0.27 -1.19 16 39 H 0.13 -0.29 6.36 -52.49 -0.33 -0.63 16 40 H 0.13 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.11 0.02 7.96 -51.93 -0.41 -0.39 16 42 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 43 H -0.26 -0.12 7.11 56.52 0.40 0.28 16 44 H -0.25 -0.40 7.11 56.52 0.40 0.01 16 45 H 0.18 -1.05 6.35 -52.49 -0.33 -1.39 16 46 H 0.42 -1.84 8.96 -40.82 -0.37 -2.21 16 47 H 0.14 0.20 7.62 -52.48 -0.40 -0.20 16 48 H 0.09 -0.13 6.11 -51.93 -0.32 -0.45 16 49 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 50 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 51 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 LS Contribution 412.38 15.07 6.21 6.21 Total: 0.00 -12.57 412.38 -11.56 -24.13 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: -6.50 Total: -15.60 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -4.80 Total: -2.10 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -1.04 Total: 0.86 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.23 Total: -6.63 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -12.57 -11.56 -24.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.943 kcal (2) G-P(sol) polarization free energy of solvation -12.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds