Wall clock time and date at job start Sun Mar 7 2021 15:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35650 * 116.99762 * 2 1 4 4 C 1.40137 * 120.14732 * 179.97438 * 3 2 1 5 5 C 1.47527 * 120.19200 * 0.02562 * 4 3 2 6 6 O 1.21585 * 120.00274 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99897 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99899 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.45339 * 205.00264 * 8 7 5 10 10 C 1.53093 * 109.41514 * 179.57009 * 9 8 7 11 11 C 1.52472 * 109.51475 * 59.16745 * 10 9 8 12 12 C 1.52474 * 110.72922 * 301.23427 * 11 10 9 13 13 C 1.52997 * 109.45661 * 84.89977 * 8 7 5 14 14 N 1.46847 * 110.48837 * 63.98337 * 11 10 9 15 15 C 1.34668 * 106.42112 * 118.54997 * 14 11 10 16 16 O 1.21543 * 123.78851 * 180.02562 * 15 14 11 17 17 N 1.33873 * 112.42210 * 0.27168 * 15 14 11 18 18 C 1.46502 * 124.19491 * 179.69375 * 17 15 14 19 19 C 1.34918 * 111.60612 * 359.53839 * 17 15 14 20 20 O 1.21232 * 127.25172 * 180.17903 * 19 17 15 21 21 C 1.39713 * 119.61521 * 180.27439 * 4 3 2 22 22 C 1.37789 * 119.90462 * 359.51915 * 21 4 3 23 23 C 1.50706 * 119.84827 * 180.20884 * 22 21 4 24 24 O 1.42896 * 109.46940 * 65.27584 * 23 22 21 25 25 Si 1.86296 * 109.47207 * 185.28152 * 23 22 21 26 26 C 1.38544 * 120.30438 * 0.48765 * 22 21 4 27 27 C 1.38059 * 120.38742 * 359.74489 * 26 22 21 28 28 H 1.09003 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47009 * 299.99495 * 1 2 3 30 30 H 1.08997 * 109.47464 * 59.99539 * 1 2 3 31 31 H 0.96995 * 120.00027 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.43659 * 324.94953 * 8 7 5 33 33 H 1.08997 * 109.48323 * 59.58078 * 9 8 7 34 34 H 1.09009 * 109.47470 * 299.54655 * 9 8 7 35 35 H 1.09004 * 109.45598 * 299.15996 * 10 9 8 36 36 H 1.08997 * 109.46417 * 179.18503 * 10 9 8 37 37 H 1.08996 * 109.46541 * 178.77246 * 12 11 10 38 38 H 1.09001 * 109.46604 * 298.74907 * 12 11 10 39 39 H 1.09002 * 109.47538 * 300.40881 * 13 8 7 40 40 H 1.09002 * 109.47941 * 60.43696 * 13 8 7 41 41 H 0.97003 * 126.78593 * 298.55196 * 14 11 10 42 42 H 1.09005 * 109.47023 * 0.02562 * 18 17 15 43 43 H 1.08992 * 109.47295 * 120.02653 * 18 17 15 44 44 H 1.09002 * 109.46914 * 240.02887 * 18 17 15 45 45 H 1.07993 * 120.04512 * 179.72937 * 21 4 3 46 46 H 1.09005 * 109.46850 * 305.28082 * 23 22 21 47 47 H 0.96703 * 114.00148 * 60.00428 * 24 23 22 48 48 H 1.48505 * 110.00040 * 179.97438 * 25 23 22 49 49 H 1.48508 * 109.99811 * 301.31506 * 25 23 22 50 50 H 1.08001 * 119.80607 * 179.71913 * 26 22 21 51 51 H 1.08002 * 119.95221 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2549 0.0532 0.0005 6 8 3.7095 -1.0334 0.0005 7 7 5.6005 0.1318 0.0005 8 6 6.4057 -1.0921 0.0000 9 6 7.7781 -0.7994 0.6099 10 6 8.6149 -2.0814 0.6187 11 6 8.7729 -2.5963 -0.8078 12 6 7.4112 -2.8725 -1.4357 13 6 6.5786 -1.5877 -1.4371 14 7 9.5283 -1.6346 -1.6207 15 6 10.6424 -2.2724 -2.0277 16 8 11.4973 -1.7618 -2.7246 17 7 10.7000 -3.5338 -1.5828 18 6 11.7952 -4.4613 -1.8768 19 6 9.6260 -3.8437 -0.8274 20 8 9.3922 -4.9014 -0.2831 21 6 4.0667 2.5364 0.0064 22 6 3.3037 3.6837 0.0015 23 6 3.9766 5.0321 0.0030 24 8 4.6991 5.2052 -1.2176 25 14 2.6884 6.3690 0.1571 26 6 1.9205 3.6033 0.0010 27 6 1.2924 2.3739 0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 6.0356 0.9987 0.0009 32 1 5.9021 -1.8579 0.5900 33 1 7.6529 -0.4400 1.6312 34 1 8.2849 -0.0386 0.0161 35 1 8.1149 -2.8372 1.2244 36 1 9.5980 -1.8705 1.0397 37 1 7.5472 -3.2182 -2.4604 38 1 6.8942 -3.6396 -0.8593 39 1 5.5998 -1.7893 -1.8723 40 1 7.0882 -0.8249 -2.0259 41 1 9.2750 -0.7206 -1.8242 42 1 12.5356 -3.9626 -2.5024 43 1 12.2621 -4.7794 -0.9447 44 1 11.4028 -5.3320 -2.4023 45 1 5.1445 2.6038 0.0112 46 1 4.6661 5.0931 0.8451 47 1 4.1475 5.1626 -2.0107 48 1 3.3393 7.7037 0.1605 49 1 1.7235 6.2767 -0.9680 50 1 1.3303 4.5078 0.0018 51 1 0.2137 2.3195 -0.0007 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_12496546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:06:24 Heat of formation + Delta-G solvation = -107.825162 kcal Electronic energy + Delta-G solvation = -37322.534523 eV Core-core repulsion = 32383.014385 eV Total energy + Delta-G solvation = -4939.520138 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.172 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.85125 -41.77818 -40.51350 -39.85830 -39.20655 -39.03270 -37.21249 -37.06366 -35.92368 -34.09374 -32.57640 -32.13119 -31.82612 -30.14464 -28.84157 -28.43393 -26.13906 -25.68893 -24.74314 -24.14572 -23.49873 -22.40436 -21.77171 -21.37495 -20.94550 -19.50826 -19.08949 -18.42567 -18.14991 -17.97242 -17.74690 -17.33203 -16.88862 -16.78815 -16.66351 -16.57842 -16.20281 -16.10164 -15.91760 -15.82107 -15.60185 -15.43904 -15.33375 -14.80960 -14.56847 -14.50922 -14.38506 -14.26675 -13.83828 -13.57899 -13.55377 -13.52189 -13.36806 -13.32566 -13.11171 -13.02112 -12.42461 -12.35127 -12.19765 -12.04671 -12.02521 -11.91511 -11.67462 -11.61805 -11.27819 -10.98888 -10.94471 -10.55236 -10.52178 -10.24235 -10.00452 -9.27576 -4.88518 -0.23281 0.24341 0.41811 1.12287 1.35086 1.61819 1.81016 1.82784 1.98805 2.00439 2.08279 2.28986 2.71011 2.78686 3.30039 3.39278 3.44491 3.58743 3.66322 3.70040 3.77654 3.92981 3.96157 4.02375 4.08437 4.15444 4.18603 4.29429 4.31881 4.36179 4.36738 4.37674 4.40037 4.47037 4.54341 4.62341 4.65017 4.70189 4.71994 4.74639 4.79787 4.86508 4.94364 4.97753 4.99157 5.12196 5.17962 5.20417 5.30514 5.48853 5.59201 5.71148 5.87849 6.22828 6.32003 6.53263 6.55941 6.98663 7.26602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.312 6.312 3 C 0.170 3.830 4 C -0.196 4.196 5 C 0.559 3.441 6 O -0.561 6.561 7 N -0.712 5.712 8 C 0.145 3.855 9 C -0.114 4.114 10 C -0.107 4.107 11 C 0.132 3.868 12 C -0.105 4.105 13 C -0.119 4.119 14 N -0.696 5.696 15 C 0.701 3.299 16 O -0.578 6.578 17 N -0.583 5.583 18 C 0.078 3.922 19 C 0.530 3.470 20 O -0.485 6.485 21 C -0.014 4.014 22 C -0.164 4.164 23 C -0.069 4.069 24 O -0.546 6.546 25 Si 0.756 3.244 26 C -0.046 4.046 27 C -0.214 4.214 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.450 0.550 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.155 0.845 46 H 0.133 0.867 47 H 0.386 0.614 48 H -0.307 1.307 49 H -0.282 1.282 50 H 0.153 0.847 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 5.359 3.341 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.122 3.878 4 C -0.200 4.200 5 C 0.347 3.653 6 O -0.440 6.440 7 N -0.364 5.364 8 C 0.040 3.960 9 C -0.152 4.152 10 C -0.146 4.146 11 C 0.041 3.959 12 C -0.145 4.145 13 C -0.158 4.158 14 N -0.362 5.362 15 C 0.402 3.598 16 O -0.454 6.454 17 N -0.329 5.329 18 C -0.063 4.063 19 C 0.317 3.683 20 O -0.355 6.355 21 C -0.032 4.032 22 C -0.165 4.165 23 C -0.179 4.179 24 O -0.354 6.354 25 Si 0.663 3.337 26 C -0.063 4.063 27 C -0.233 4.233 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.298 0.702 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.172 0.828 46 H 0.150 0.850 47 H 0.235 0.765 48 H -0.236 1.236 49 H -0.208 1.208 50 H 0.170 0.830 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.705 4.717 3.307 6.849 hybrid contribution 0.111 0.217 -1.494 1.513 sum -3.594 4.933 1.814 6.368 Atomic orbital electron populations 1.23429 0.76670 1.05401 1.02753 1.86334 1.23046 1.26397 1.86555 1.19436 0.91509 0.85439 0.91417 1.19436 0.91021 0.94195 1.15315 1.18233 0.82730 0.88474 0.75841 1.90825 1.72483 1.30193 1.50458 1.45799 1.04937 1.10373 1.75336 1.21009 0.91712 0.87002 0.96255 1.21752 0.92543 0.97334 1.03579 1.21647 1.02680 0.99066 0.91165 1.21118 0.92974 0.86320 0.95458 1.21594 0.91370 0.99576 1.01917 1.21829 0.99980 0.96717 0.97225 1.45517 1.20422 1.16373 1.53849 1.16042 0.83137 0.80978 0.79646 1.91020 1.42918 1.69640 1.41831 1.46452 1.23959 1.14129 1.48399 1.22050 0.88085 0.92332 1.03792 1.20990 0.81389 0.89351 0.76527 1.90818 1.73537 1.26976 1.44181 1.21139 1.00843 0.89005 0.92239 1.20149 0.93674 0.95956 1.06734 1.25044 1.04372 0.98511 0.89971 1.86581 1.38369 1.94234 1.16206 0.94197 0.76871 0.74323 0.88334 1.21298 0.94028 0.97854 0.93161 1.21447 1.01672 0.91037 1.09119 0.87507 0.90754 0.91148 0.74966 0.90651 0.88517 0.88948 0.88755 0.89146 0.90440 0.89233 0.92153 0.89767 0.70247 0.88455 0.89276 0.89525 0.82754 0.84953 0.76477 1.23552 1.20845 0.82993 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 -2.10 8.57 -68.73 -0.59 -2.69 16 3 C 0.17 0.57 6.70 22.84 0.15 0.72 16 4 C -0.20 -0.43 5.89 -20.01 -0.12 -0.55 16 5 C 0.56 2.75 7.73 86.69 0.67 3.42 16 6 O -0.56 -7.73 14.82 16.94 0.25 -7.48 16 7 N -0.71 2.42 5.03 -445.69 -2.24 0.18 16 8 C 0.14 -0.58 2.44 44.99 0.11 -0.47 16 9 C -0.11 1.08 5.28 30.63 0.16 1.24 16 10 C -0.11 0.70 4.98 30.45 0.15 0.85 16 11 C 0.13 -0.44 0.84 2.58 0.00 -0.44 16 12 C -0.11 0.31 4.98 30.45 0.15 0.46 16 13 C -0.12 0.42 5.38 30.63 0.16 0.59 16 14 N -0.70 2.52 5.23 -442.72 -2.31 0.21 16 15 C 0.70 2.57 8.63 179.37 1.55 4.12 16 16 O -0.58 -6.47 17.24 -3.85 -0.07 -6.54 16 17 N -0.58 -1.44 3.01 -796.76 -2.40 -3.83 16 18 C 0.08 -0.04 10.89 127.77 1.39 1.35 16 19 C 0.53 1.32 6.95 87.77 0.61 1.93 16 20 O -0.48 -3.92 17.86 -2.88 -0.05 -3.97 16 21 C -0.01 0.05 9.16 22.52 0.21 0.26 16 22 C -0.16 0.82 5.34 -19.90 -0.11 0.71 16 23 C -0.07 0.43 2.79 71.24 0.20 0.63 16 24 O -0.55 1.66 12.83 -148.98 -1.91 -0.25 16 25 Si 0.76 -4.47 29.87 68.60 2.05 -2.42 16 26 C -0.05 0.24 8.65 22.30 0.19 0.43 16 27 C -0.21 0.58 9.03 22.34 0.20 0.78 16 28 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 30 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 31 H 0.41 -3.85 6.63 -92.71 -0.61 -4.47 16 32 H 0.08 0.08 7.58 -2.39 -0.02 0.06 16 33 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.09 -1.19 7.33 -2.38 -0.02 -1.21 16 35 H 0.09 -0.51 8.14 -2.38 -0.02 -0.53 16 36 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.08 -0.58 7.33 -2.39 -0.02 -0.59 16 41 H 0.45 -3.56 7.70 -92.71 -0.71 -4.27 16 42 H 0.10 -0.02 7.45 -2.38 -0.02 -0.04 16 43 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.09 -0.19 8.14 -2.39 -0.02 -0.20 16 45 H 0.15 -1.35 6.40 -2.91 -0.02 -1.37 16 46 H 0.13 -1.14 7.96 -2.38 -0.02 -1.16 16 47 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 48 H -0.31 -0.89 7.11 99.48 0.71 -0.18 16 49 H -0.28 0.64 7.00 99.48 0.70 1.33 16 50 H 0.15 -1.43 4.81 -2.91 -0.01 -1.45 16 51 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 Total: 0.00 -30.59 410.85 -1.39 -31.98 By element: Atomic # 1 Polarization: -21.37 SS G_CDS: -0.92 Total: -22.29 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.80 Total: 17.12 kcal Atomic # 7 Polarization: 3.50 SS G_CDS: -6.95 Total: -3.45 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -2.37 Total: -20.93 kcal Atomic # 14 Polarization: -4.47 SS G_CDS: 2.05 Total: -2.42 kcal Total: -30.59 -1.39 -31.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_12496546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.849 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds