Wall clock time and date at job start Sun Mar 7 2021 15:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39282 * 121.03507 * 2 1 4 4 C 1.46490 * 134.19908 * 0.02562 * 3 2 1 5 5 C 1.50707 * 126.60005 * 0.02562 * 4 3 2 6 6 O 1.42900 * 109.46973 * 75.00235 * 5 4 3 7 7 Si 1.86305 * 109.47041 * 195.00501 * 5 4 3 8 8 C 1.34182 * 106.80508 * 180.02562 * 4 3 2 9 9 N 1.36949 * 109.94935 * 359.97438 * 8 4 3 10 10 C 1.37158 * 110.11287 * 359.97438 * 9 8 4 11 11 N 1.32820 * 132.96250 * 179.97438 * 10 9 8 12 12 C 1.31318 * 121.88612 * 179.75293 * 11 10 9 13 13 C 1.39758 * 121.02894 * 180.02562 * 2 1 3 14 14 C 1.47663 * 120.45182 * 359.95063 * 13 2 1 15 15 O 1.21574 * 120.00124 * 354.24851 * 14 13 2 16 16 N 1.34779 * 119.99883 * 174.24461 * 14 13 2 17 17 C 1.46500 * 119.99893 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.45286 * 205.00387 * 17 16 14 19 19 C 1.53098 * 109.41440 * 179.56925 * 18 17 16 20 20 C 1.52479 * 109.51127 * 59.17121 * 19 18 17 21 21 C 1.52472 * 110.72834 * 301.23704 * 20 19 18 22 22 C 1.52994 * 109.45455 * 84.90850 * 17 16 14 23 23 N 1.46850 * 110.48571 * 63.98244 * 20 19 18 24 24 C 1.34674 * 106.42189 * 118.54965 * 23 20 19 25 25 O 1.21531 * 123.79102 * 180.02562 * 24 23 20 26 26 N 1.33869 * 112.41715 * 0.26848 * 24 23 20 27 27 C 1.46508 * 124.19379 * 179.69015 * 26 24 23 28 28 C 1.34919 * 111.61433 * 359.53730 * 26 24 23 29 29 O 1.21233 * 127.26102 * 180.17135 * 28 26 24 30 30 H 1.09000 * 109.46856 * 263.75649 * 1 2 3 31 31 H 1.09006 * 109.46962 * 23.75206 * 1 2 3 32 32 H 1.08996 * 109.47171 * 143.75190 * 1 2 3 33 33 H 1.08997 * 109.47240 * 315.00029 * 5 4 3 34 34 H 0.96700 * 113.99978 * 179.97438 * 6 5 4 35 35 H 1.48497 * 109.99780 * 299.99715 * 7 5 4 36 36 H 1.48492 * 110.00170 * 61.31708 * 7 5 4 37 37 H 1.07999 * 125.02719 * 180.02562 * 8 4 3 38 38 H 0.96998 * 124.94389 * 180.02562 * 9 8 4 39 39 H 1.07995 * 119.31109 * 180.29129 * 12 11 10 40 40 H 0.97003 * 119.99747 * 0.02562 * 16 14 13 41 41 H 1.09001 * 109.43929 * 324.95102 * 17 16 14 42 42 H 1.08999 * 109.47982 * 59.58744 * 18 17 16 43 43 H 1.09003 * 109.49030 * 299.55515 * 18 17 16 44 44 H 1.08999 * 109.46414 * 299.16093 * 19 18 17 45 45 H 1.08992 * 109.46424 * 179.18317 * 19 18 17 46 46 H 1.08997 * 109.46074 * 178.77642 * 21 20 19 47 47 H 1.08998 * 109.46124 * 298.74063 * 21 20 19 48 48 H 1.09004 * 109.47782 * 300.40423 * 22 17 16 49 49 H 1.09001 * 109.48057 * 60.43782 * 22 17 16 50 50 H 0.97005 * 126.79123 * 298.54907 * 23 20 19 51 51 H 1.09003 * 109.46820 * 0.03085 * 27 26 24 52 52 H 1.09001 * 109.46903 * 120.02182 * 27 26 24 53 53 H 1.08990 * 109.47252 * 240.02840 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8517 2.6100 0.0005 5 6 0.4528 3.1705 0.0017 6 8 -0.1180 3.0238 1.3035 7 14 0.5070 4.9764 -0.4529 8 6 2.9949 3.3125 -0.0004 9 7 4.0670 2.4603 -0.0008 10 6 3.6348 1.1586 0.0004 11 7 4.2721 -0.0067 0.0001 12 6 3.6266 -1.1503 0.0063 13 6 2.2274 -1.1976 -0.0005 14 6 1.5224 -2.4951 0.0000 15 8 0.3118 -2.5290 0.1064 16 7 2.2210 -3.6416 -0.1176 17 6 1.5215 -4.9288 -0.1176 18 6 2.4751 -6.0271 0.3574 19 6 1.7401 -7.3700 0.3672 20 6 1.2346 -7.6842 -1.0366 21 6 0.2990 -6.5867 -1.5315 22 6 1.0391 -5.2466 -1.5344 23 7 2.3616 -7.8551 -1.9624 24 6 2.2859 -9.1175 -2.4255 25 8 3.0730 -9.5947 -3.2191 26 7 1.2432 -9.7859 -1.9175 27 6 0.9138 -11.1741 -2.2504 28 6 0.5352 -9.0238 -1.0583 29 8 -0.4561 -9.3443 -0.4382 30 1 -0.3633 -0.1118 1.0216 31 1 -0.3633 0.9407 -0.4139 32 1 -0.3633 -0.8287 -0.6076 33 1 -0.1554 2.6312 -0.7245 34 1 -1.0200 3.3644 1.3782 35 1 1.3331 5.7228 0.5296 36 1 1.0692 5.1400 -1.8175 37 1 3.0601 4.3905 0.0001 38 1 4.9967 2.7371 -0.0010 39 1 4.1868 -2.0736 0.0106 40 1 3.1869 -3.6145 -0.2022 41 1 0.6649 -4.8762 0.5544 42 1 2.8232 -5.7958 1.3641 43 1 3.3286 -6.0848 -0.3181 44 1 0.8954 -7.3167 1.0540 45 1 2.4228 -8.1553 0.6916 46 1 -0.0323 -6.8208 -2.5431 47 1 -0.5663 -6.5224 -0.8718 48 1 0.3652 -4.4600 -1.8739 49 1 1.8961 -5.3060 -2.2054 50 1 3.0287 -7.1902 -2.1945 51 1 1.6432 -11.5597 -2.9628 52 1 0.9354 -11.7799 -1.3446 53 1 -0.0820 -11.2155 -2.6916 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_12890568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:06:49 Heat of formation + Delta-G solvation = -26.560078 kcal Electronic energy + Delta-G solvation = -40231.832299 eV Core-core repulsion = 35071.676550 eV Total energy + Delta-G solvation = -5160.155749 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.178 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.82716 -42.93617 -41.16561 -39.90531 -39.41376 -38.63339 -37.67699 -37.08217 -36.05460 -35.05435 -34.03572 -32.13319 -32.08766 -31.44782 -29.95583 -29.01491 -28.61695 -26.49105 -25.35141 -24.62817 -24.11196 -24.09859 -23.21713 -21.86347 -21.59569 -20.99804 -20.41115 -19.33857 -19.12473 -18.74286 -18.31844 -17.96050 -17.88098 -17.50371 -17.30728 -16.71327 -16.66999 -16.58778 -16.49283 -16.04175 -15.85020 -15.47538 -15.34644 -15.31234 -15.20448 -15.11945 -14.76240 -14.45285 -14.37062 -14.15602 -14.08139 -13.78546 -13.75220 -13.68128 -13.56695 -13.40239 -13.34793 -13.30445 -13.14527 -12.89581 -12.59138 -12.31164 -12.02372 -11.94410 -11.88807 -11.61390 -11.28517 -11.21457 -11.08634 -10.96872 -10.52895 -10.43478 -10.13301 -10.10486 -9.69169 -9.24044 -4.91676 -0.38792 -0.14988 0.44239 1.14363 1.24835 1.33850 1.54443 1.73190 1.80147 1.84781 1.98652 2.00490 2.05447 2.71844 2.80754 3.23963 3.33557 3.35488 3.42849 3.48743 3.62680 3.70308 3.74744 3.85807 3.95361 3.99450 4.04717 4.07277 4.13977 4.18644 4.26887 4.30710 4.33846 4.37360 4.39611 4.46862 4.56283 4.58313 4.64654 4.70267 4.73552 4.77997 4.82027 4.90675 4.96511 5.01747 5.03334 5.10844 5.19197 5.21387 5.23303 5.35493 5.51739 5.64131 5.73590 5.90200 6.08541 6.25294 6.50459 6.74868 6.98610 7.00866 7.20154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.067 3.933 3 C -0.169 4.169 4 C -0.157 4.157 5 C -0.054 4.054 6 O -0.563 6.563 7 Si 0.782 3.218 8 C 0.063 3.937 9 N -0.563 5.563 10 C 0.288 3.712 11 N -0.518 5.518 12 C 0.184 3.816 13 C -0.240 4.240 14 C 0.575 3.425 15 O -0.558 6.558 16 N -0.708 5.708 17 C 0.145 3.855 18 C -0.116 4.116 19 C -0.107 4.107 20 C 0.132 3.868 21 C -0.106 4.106 22 C -0.120 4.120 23 N -0.696 5.696 24 C 0.701 3.299 25 O -0.579 6.579 26 N -0.584 5.584 27 C 0.078 3.922 28 C 0.529 3.471 29 O -0.485 6.485 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.400 0.600 35 H -0.282 1.282 36 H -0.288 1.288 37 H 0.197 0.803 38 H 0.437 0.563 39 H 0.201 0.799 40 H 0.414 0.586 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.450 0.550 51 H 0.096 0.904 52 H 0.088 0.912 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 4.826 0.252 4.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.058 3.942 3 C -0.176 4.176 4 C -0.164 4.164 5 C -0.163 4.163 6 O -0.373 6.373 7 Si 0.686 3.314 8 C -0.064 4.064 9 N -0.169 5.169 10 C 0.054 3.946 11 N -0.232 5.232 12 C 0.015 3.985 13 C -0.248 4.248 14 C 0.363 3.637 15 O -0.438 6.438 16 N -0.360 5.360 17 C 0.041 3.959 18 C -0.154 4.154 19 C -0.146 4.146 20 C 0.041 3.959 21 C -0.145 4.145 22 C -0.158 4.158 23 N -0.361 5.361 24 C 0.402 3.598 25 O -0.455 6.455 26 N -0.330 5.330 27 C -0.063 4.063 28 C 0.317 3.683 29 O -0.356 6.356 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.251 0.749 35 H -0.209 1.209 36 H -0.215 1.215 37 H 0.214 0.786 38 H 0.277 0.723 39 H 0.217 0.783 40 H 0.252 0.748 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.298 0.702 51 H 0.115 0.885 52 H 0.107 0.893 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.367 4.832 0.129 5.024 hybrid contribution 0.583 -0.286 -0.243 0.693 sum 1.950 4.546 -0.114 4.948 Atomic orbital electron populations 1.21048 0.88602 1.03668 1.03502 1.20149 0.97619 0.89766 0.86666 1.19718 0.93268 0.94197 1.10399 1.20011 0.94814 0.90465 1.11157 1.24378 0.90438 1.12516 0.88978 1.86492 1.35507 1.86353 1.28940 0.93814 0.88736 0.72861 0.76030 1.21997 0.85102 0.96457 1.02801 1.41515 1.10203 1.02123 1.63102 1.18774 0.89652 0.86646 0.99489 1.66534 1.40896 0.96346 1.19395 1.23106 0.89945 0.95186 0.90218 1.20569 0.95335 0.93662 1.15198 1.17826 0.86462 0.83760 0.75693 1.90752 1.14794 1.87354 1.50871 1.45760 1.11315 1.04667 1.74244 1.21045 0.96109 0.81842 0.96942 1.21766 0.97958 0.91284 1.04366 1.21647 1.02343 0.98963 0.91635 1.21138 0.87588 0.93351 0.93802 1.21600 0.97580 0.92400 1.02888 1.21847 1.01055 0.95636 0.97312 1.45517 1.31471 1.12373 1.46763 1.16048 0.80771 0.82622 0.80400 1.91018 1.44909 1.72124 1.37473 1.46456 1.27561 1.16364 1.42598 1.22043 1.03368 0.77341 1.03517 1.21028 0.82768 0.87228 0.77302 1.90819 1.23426 1.77847 1.43471 0.90467 0.90437 0.89338 0.89955 0.74872 1.20856 1.21457 0.78618 0.72255 0.78270 0.74834 0.90111 0.88552 0.88855 0.88708 0.89375 0.90476 0.89081 0.91586 0.89754 0.70213 0.88511 0.89340 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 8.69 71.24 0.62 0.01 16 2 C 0.07 0.46 5.98 -19.25 -0.12 0.35 16 3 C -0.17 -1.28 6.16 -20.19 -0.12 -1.40 16 4 C -0.16 -0.71 5.61 -18.64 -0.10 -0.81 16 5 C -0.05 0.05 2.05 71.24 0.15 0.20 16 6 O -0.56 0.23 12.86 -148.98 -1.92 -1.68 16 7 Si 0.78 -3.92 30.80 68.60 2.11 -1.80 16 8 C 0.06 0.10 10.44 82.97 0.87 0.96 16 9 N -0.56 -0.99 6.04 -192.25 -1.16 -2.15 16 10 C 0.29 1.93 8.42 134.02 1.13 3.06 16 11 N -0.52 -2.78 10.37 -191.75 -1.99 -4.77 16 12 C 0.18 0.08 10.67 85.20 0.91 0.99 16 13 C -0.24 -0.82 5.89 -19.99 -0.12 -0.94 16 14 C 0.57 1.17 7.68 86.73 0.67 1.84 16 15 O -0.56 -4.70 13.15 -3.95 -0.05 -4.75 16 16 N -0.71 4.35 5.03 -445.57 -2.24 2.11 16 17 C 0.14 -0.98 2.44 44.99 0.11 -0.87 16 18 C -0.12 1.31 5.28 30.63 0.16 1.47 16 19 C -0.11 0.85 4.98 30.45 0.15 1.00 16 20 C 0.13 -0.62 0.84 2.58 0.00 -0.62 16 21 C -0.11 0.52 4.98 30.45 0.15 0.67 16 22 C -0.12 0.75 5.38 30.62 0.16 0.92 16 23 N -0.70 3.36 5.23 -442.70 -2.31 1.04 16 24 C 0.70 1.99 8.63 179.37 1.55 3.54 16 25 O -0.58 -6.12 17.24 -3.81 -0.07 -6.19 16 26 N -0.58 -0.99 3.01 -796.76 -2.40 -3.39 16 27 C 0.08 -0.08 10.89 127.77 1.39 1.31 16 28 C 0.53 0.80 6.95 87.77 0.61 1.41 16 29 O -0.49 -3.48 17.86 -2.88 -0.05 -3.53 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.20 5.06 -2.38 -0.01 0.18 16 32 H 0.09 0.63 5.94 -2.39 -0.01 0.62 16 33 H 0.08 -0.26 6.05 -2.39 -0.01 -0.27 16 34 H 0.40 -4.32 8.74 -74.06 -0.65 -4.96 16 35 H -0.28 0.00 7.04 99.48 0.70 0.71 16 36 H -0.29 -0.13 7.11 99.48 0.71 0.58 16 37 H 0.20 -0.71 6.31 -2.91 -0.02 -0.73 16 38 H 0.44 -1.71 8.96 -92.71 -0.83 -2.54 16 39 H 0.20 -1.79 6.43 -2.91 -0.02 -1.81 16 40 H 0.41 -5.02 6.68 -92.71 -0.62 -5.64 16 41 H 0.08 -0.18 7.58 -2.39 -0.02 -0.20 16 42 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 43 H 0.09 -1.38 7.33 -2.39 -0.02 -1.39 16 44 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 46 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.08 -0.78 7.33 -2.39 -0.02 -0.80 16 50 H 0.45 -4.17 7.70 -92.70 -0.71 -4.88 16 51 H 0.10 -0.06 7.45 -2.39 -0.02 -0.08 16 52 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 53 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -32.99 422.53 -3.64 -36.63 By element: Atomic # 1 Polarization: -22.86 SS G_CDS: -1.73 Total: -24.59 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 8.17 Total: 13.08 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -10.10 Total: -7.16 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -2.08 Total: -16.15 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.11 Total: -1.80 kcal Total: -32.99 -3.64 -36.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_12890568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.071 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds