Wall clock time and date at job start Sun Mar 7 2021 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.33873 * 124.19491 * 2 1 4 4 O 1.21543 * 123.78882 * 359.96089 * 3 2 1 5 5 N 1.34668 * 112.42210 * 179.69375 * 3 2 1 6 6 C 1.46847 * 106.42112 * 0.27168 * 5 3 2 7 7 C 1.52474 * 110.49025 * 241.43843 * 6 5 3 8 8 C 1.53095 * 109.51486 * 296.01556 * 7 6 5 9 9 C 1.52997 * 109.41704 * 300.83442 * 8 7 6 10 10 N 1.46505 * 109.45661 * 180.42687 * 9 8 7 11 11 C 1.34782 * 119.99899 * 84.89977 * 10 9 8 12 12 O 1.21585 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.47527 * 119.99897 * 180.02562 * 11 10 9 14 14 C 1.40137 * 120.19200 * 179.97438 * 13 11 10 15 15 O 1.35650 * 120.14732 * 0.02562 * 14 13 11 16 16 C 1.38707 * 119.70192 * 179.97438 * 14 13 11 17 17 C 1.38054 * 120.08494 * 0.03373 * 16 14 13 18 18 C 1.50697 * 119.80619 * 179.97438 * 17 16 14 19 19 O 1.42897 * 109.47333 * 64.99473 * 18 17 16 20 20 Si 1.86303 * 109.47321 * 184.99512 * 18 17 16 21 21 C 1.38557 * 120.38980 * 359.96820 * 17 16 14 22 22 C 1.37787 * 120.29774 * 359.74729 * 21 17 16 23 23 C 1.53006 * 109.57143 * 60.39626 * 9 8 7 24 24 C 1.52472 * 110.48837 * 118.54997 * 6 5 3 25 25 C 1.34918 * 124.19877 * 180.17464 * 2 1 3 26 26 O 1.21232 * 127.25172 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.47023 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47295 * 120.02653 * 1 2 3 29 29 H 1.09002 * 109.46914 * 240.02887 * 1 2 3 30 30 H 0.97003 * 126.79295 * 180.26969 * 5 3 2 31 31 H 1.08996 * 109.46541 * 56.02444 * 7 6 5 32 32 H 1.09001 * 109.46604 * 176.00106 * 7 6 5 33 33 H 1.09002 * 109.48147 * 180.85622 * 8 7 6 34 34 H 1.09002 * 109.48597 * 60.82031 * 8 7 6 35 35 H 1.09002 * 109.45518 * 300.36572 * 9 8 7 36 36 H 0.96995 * 120.00073 * 264.89888 * 10 9 8 37 37 H 0.96700 * 114.00725 * 90.00090 * 15 14 13 38 38 H 1.08002 * 119.96313 * 179.97438 * 16 14 13 39 39 H 1.09001 * 109.47321 * 304.99324 * 18 17 16 40 40 H 0.96703 * 114.00200 * 60.00401 * 19 18 17 41 41 H 1.48501 * 110.00405 * 179.97438 * 20 18 17 42 42 H 1.48496 * 109.99977 * 301.31869 * 20 18 17 43 43 H 1.07994 * 119.84439 * 180.02562 * 21 17 16 44 44 H 1.07993 * 120.04612 * 180.27641 * 22 21 17 45 45 H 1.08997 * 109.48323 * 179.61336 * 23 9 8 46 46 H 1.09009 * 109.47470 * 59.57912 * 23 9 8 47 47 H 1.09004 * 109.46319 * 183.98645 * 24 6 5 48 48 H 1.08997 * 109.46734 * 303.96772 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2174 1.1073 0.0000 4 8 1.7618 2.2341 -0.0007 5 7 3.5357 0.8325 0.0067 6 6 3.6548 -0.6311 0.0049 7 6 4.3719 -1.1098 1.2625 8 6 5.8074 -0.5778 1.2664 9 6 6.5389 -1.0787 0.0194 10 7 7.9159 -0.5784 0.0275 11 6 8.8720 -1.2476 0.7018 12 8 8.5916 -2.2661 1.3037 13 6 10.2585 -0.7436 0.7104 14 6 11.2557 -1.4359 1.4105 15 8 10.9508 -2.5735 2.0836 16 6 12.5560 -0.9531 1.4113 17 6 12.8649 0.2046 0.7256 18 6 14.2796 0.7237 0.7312 19 8 15.1314 -0.2075 0.0609 20 14 14.3421 2.3657 -0.1467 21 6 11.8818 0.8919 0.0322 22 6 10.5861 0.4236 0.0158 23 6 5.8206 -0.5736 -1.2336 24 6 4.3851 -1.1056 -1.2466 25 6 2.2234 -1.1159 -0.0034 26 8 1.8377 -2.2652 -0.0073 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5142 -0.8897 29 1 -0.3633 -0.5134 0.8903 30 1 4.2630 1.4745 0.0116 31 1 3.8457 -0.7414 2.1431 32 1 4.3883 -2.1995 1.2787 33 1 6.3242 -0.9329 2.1581 34 1 5.7913 0.5121 1.2652 35 1 6.5489 -2.1686 0.0177 36 1 8.1394 0.2343 -0.4524 37 1 11.0400 -3.3788 1.5558 38 1 13.3278 -1.4831 1.9499 39 1 14.6167 0.8488 1.7602 40 1 14.8900 -0.3678 -0.8617 41 1 15.7320 2.8887 -0.1476 42 1 13.8549 2.2149 -1.5413 43 1 12.1333 1.7964 -0.5016 44 1 9.8240 0.9601 -0.5296 45 1 6.3468 -0.9255 -2.1209 46 1 5.8043 0.5163 -1.2287 47 1 4.4019 -2.1954 -1.2660 48 1 3.8682 -0.7345 -2.1315 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:07:52 Heat of formation + Delta-G solvation = -117.264568 kcal Electronic energy + Delta-G solvation = -34768.024231 eV Core-core repulsion = 29983.632389 eV Total energy + Delta-G solvation = -4784.391842 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.83630 -41.67331 -40.36738 -39.83739 -39.08989 -38.42365 -37.21215 -37.04421 -35.90503 -34.11430 -32.66717 -32.11347 -31.07462 -30.19028 -28.83845 -27.38469 -25.19552 -24.17999 -23.88189 -23.83877 -22.93695 -21.77780 -21.42106 -21.03570 -19.47265 -19.09527 -18.66304 -18.28075 -17.96295 -17.73407 -17.43959 -16.77988 -16.62776 -16.55069 -16.46888 -16.26492 -16.09138 -15.86349 -15.59557 -15.46165 -15.32050 -15.24120 -14.80848 -14.50284 -14.37262 -14.22619 -13.80580 -13.73705 -13.56970 -13.46833 -13.35166 -13.15624 -13.06229 -12.94189 -12.35583 -12.33342 -12.13352 -12.02851 -11.90151 -11.64831 -11.55777 -11.25183 -10.97519 -10.88375 -10.60903 -10.53544 -10.21111 -9.97691 -9.75156 -4.88458 -0.38105 0.18016 0.43228 1.13881 1.29387 1.61982 1.75174 1.84389 1.99768 2.00762 2.05471 2.60981 2.79722 3.13746 3.31476 3.40484 3.42693 3.50893 3.70725 3.72225 3.81470 3.94464 3.98836 4.08311 4.13766 4.16933 4.30337 4.31261 4.36954 4.38741 4.43271 4.45983 4.55751 4.63525 4.66475 4.73153 4.78522 4.80249 4.88646 4.98948 5.00967 5.06081 5.13393 5.19990 5.23104 5.27670 5.47154 5.62934 5.73752 5.89637 6.24364 6.47557 6.52658 6.72959 7.00893 7.22569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.701 3.299 4 O -0.578 6.578 5 N -0.695 5.695 6 C 0.133 3.867 7 C -0.106 4.106 8 C -0.120 4.120 9 C 0.144 3.856 10 N -0.707 5.707 11 C 0.557 3.443 12 O -0.561 6.561 13 C -0.178 4.178 14 C 0.151 3.849 15 O -0.499 6.499 16 C -0.142 4.142 17 C -0.071 4.071 18 C -0.095 4.095 19 O -0.548 6.548 20 Si 0.779 3.221 21 C -0.134 4.134 22 C -0.051 4.051 23 C -0.114 4.114 24 C -0.107 4.107 25 C 0.529 3.471 26 O -0.486 6.486 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.451 0.549 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.406 0.594 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.388 0.612 41 H -0.309 1.309 42 H -0.267 1.267 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 4.857 -5.027 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C 0.402 3.598 4 O -0.454 6.454 5 N -0.360 5.360 6 C 0.042 3.958 7 C -0.146 4.146 8 C -0.158 4.158 9 C 0.040 3.960 10 N -0.360 5.360 11 C 0.345 3.655 12 O -0.440 6.440 13 C -0.182 4.182 14 C 0.104 3.896 15 O -0.311 6.311 16 C -0.161 4.161 17 C -0.072 4.072 18 C -0.203 4.203 19 O -0.357 6.357 20 Si 0.683 3.317 21 C -0.151 4.151 22 C -0.070 4.070 23 C -0.152 4.152 24 C -0.146 4.146 25 C 0.316 3.684 26 O -0.357 6.357 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.299 0.701 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.266 0.734 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.238 0.762 41 H -0.238 1.238 42 H -0.193 1.193 43 H 0.179 0.821 44 H 0.190 0.810 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.447 4.876 -4.233 6.617 hybrid contribution 0.623 -1.178 -0.708 1.509 sum 2.069 3.697 -4.941 6.509 Atomic orbital electron populations 1.22044 0.74175 1.05505 1.04554 1.46460 1.10459 1.07936 1.68138 1.16042 0.83033 0.83615 0.77121 1.91023 1.75991 1.21631 1.56732 1.45494 1.05670 1.07268 1.77608 1.21109 0.92618 0.81375 1.00697 1.21598 0.95816 1.02623 0.94518 1.21838 0.93350 1.02079 0.98556 1.21021 0.80081 0.99654 0.95282 1.45773 1.07962 1.29360 1.52893 1.18261 0.85274 0.83358 0.78591 1.90827 1.82940 1.25952 1.44268 1.20467 0.93543 1.00268 1.03910 1.18770 0.91263 0.88868 0.90649 1.84715 1.90511 1.15663 1.40257 1.21341 0.95142 0.98302 1.01272 1.20466 0.96541 0.94354 0.95798 1.25463 0.87126 1.03074 1.04598 1.86609 1.55427 1.63531 1.30105 0.93916 0.80876 0.76900 0.79961 1.21284 0.92576 1.00901 1.00336 1.21515 0.97511 0.92770 0.95160 1.21756 0.93348 1.02771 0.97277 1.21652 0.95715 1.03016 0.94259 1.21037 0.89143 0.84440 0.73767 1.90819 1.79687 1.18739 1.46417 0.88427 0.89325 0.89597 0.70123 0.90520 0.89385 0.92206 0.89421 0.90672 0.74561 0.73414 0.85122 0.85944 0.76235 1.23817 1.19252 0.82117 0.81028 0.88417 0.88588 0.88904 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.11 10.89 127.77 1.39 1.28 16 2 N -0.58 -0.75 3.01 -796.76 -2.40 -3.15 16 3 C 0.70 1.49 8.63 179.37 1.55 3.04 16 4 O -0.58 -5.61 17.24 -3.85 -0.07 -5.67 16 5 N -0.69 3.92 5.23 -442.72 -2.31 1.60 16 6 C 0.13 -0.67 0.84 2.58 0.00 -0.67 16 7 C -0.11 0.49 4.98 30.45 0.15 0.64 16 8 C -0.12 0.71 5.38 30.62 0.16 0.88 16 9 C 0.14 -1.02 2.44 44.99 0.11 -0.91 16 10 N -0.71 5.26 5.03 -445.69 -2.24 3.02 16 11 C 0.56 0.64 7.73 86.69 0.67 1.31 16 12 O -0.56 -5.70 14.82 16.94 0.25 -5.45 16 13 C -0.18 0.18 5.89 -20.01 -0.12 0.06 16 14 C 0.15 0.42 6.72 22.84 0.15 0.58 16 15 O -0.50 -3.06 11.58 -68.73 -0.80 -3.85 16 16 C -0.14 -0.07 9.60 22.34 0.21 0.14 16 17 C -0.07 0.27 5.36 -19.83 -0.11 0.16 16 18 C -0.09 0.39 2.79 71.23 0.20 0.59 16 19 O -0.55 0.22 12.83 -148.98 -1.91 -1.69 16 20 Si 0.78 -5.25 29.86 68.60 2.05 -3.21 16 21 C -0.13 1.08 8.64 22.24 0.19 1.27 16 22 C -0.05 0.43 9.54 22.52 0.21 0.65 16 23 C -0.11 1.42 5.28 30.63 0.16 1.58 16 24 C -0.11 0.93 4.98 30.45 0.15 1.08 16 25 C 0.53 0.69 6.95 87.77 0.61 1.30 16 26 O -0.49 -3.48 17.86 -2.88 -0.05 -3.53 16 27 H 0.10 -0.11 7.45 -2.38 -0.02 -0.13 16 28 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.45 -4.72 7.70 -92.71 -0.71 -5.43 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.09 -0.85 7.33 -2.39 -0.02 -0.87 16 35 H 0.08 -0.13 7.58 -2.39 -0.02 -0.15 16 36 H 0.42 -6.06 6.63 -92.71 -0.61 -6.68 16 37 H 0.41 -0.20 9.06 -74.06 -0.67 -0.87 16 38 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.12 -0.54 7.96 -2.39 -0.02 -0.56 16 40 H 0.39 -2.63 8.70 -74.05 -0.64 -3.27 16 41 H -0.31 -0.79 7.11 99.48 0.71 -0.08 16 42 H -0.27 1.38 7.00 99.48 0.70 2.07 16 43 H 0.16 -2.12 4.81 -2.91 -0.01 -2.13 16 44 H 0.17 -2.88 6.40 -2.91 -0.02 -2.90 16 45 H 0.10 -1.34 8.14 -2.39 -0.02 -1.36 16 46 H 0.10 -1.58 7.33 -2.38 -0.02 -1.59 16 47 H 0.09 -0.66 8.14 -2.38 -0.02 -0.68 16 48 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -32.09 392.35 -3.31 -35.40 By element: Atomic # 1 Polarization: -24.92 SS G_CDS: -1.54 Total: -26.46 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 5.71 Total: 12.97 kcal Atomic # 7 Polarization: 8.43 SS G_CDS: -6.95 Total: 1.48 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -2.57 Total: -20.19 kcal Atomic # 14 Polarization: -5.25 SS G_CDS: 2.05 Total: -3.21 kcal Total: -32.09 -3.31 -35.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.861 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds