Wall clock time and date at job start Sun Mar 7 2021 15:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46908 * 111.00235 * 2 1 4 4 C 1.39048 * 111.00358 * 123.94891 * 2 1 3 5 5 C 1.39198 * 119.93137 * 120.01958 * 4 2 1 6 6 C 1.50696 * 119.96331 * 0.02562 * 5 4 2 7 7 O 1.42901 * 109.47402 * 74.99710 * 6 5 4 8 8 Si 1.86302 * 109.47088 * 194.99726 * 6 5 4 9 9 C 1.37629 * 120.07271 * 179.74859 * 5 4 2 10 10 C 1.39779 * 119.92507 * 0.48979 * 9 5 4 11 11 C 1.47521 * 120.06461 * 179.76641 * 10 9 5 12 12 O 1.21591 * 120.00456 * 359.72474 * 11 10 9 13 13 N 1.34778 * 119.99827 * 179.72510 * 11 10 9 14 14 C 1.46499 * 120.00316 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46746 * 155.00249 * 14 13 11 16 16 C 1.53076 * 109.42700 * 180.48441 * 15 14 13 17 17 C 1.52477 * 109.58084 * 300.86108 * 16 15 14 18 18 C 1.52461 * 110.75242 * 58.56849 * 17 16 15 19 19 C 1.53011 * 109.46522 * 275.04319 * 14 13 11 20 20 N 1.46862 * 110.48719 * 181.33030 * 17 16 15 21 21 C 1.34668 * 106.42757 * 118.54255 * 20 17 16 22 22 O 1.21543 * 123.78851 * 179.97438 * 21 20 17 23 23 N 1.33864 * 112.41977 * 0.22691 * 21 20 17 24 24 C 1.46503 * 124.19297 * 179.76467 * 23 21 20 25 25 C 1.34915 * 111.61236 * 359.60236 * 23 21 20 26 26 O 1.21231 * 127.25540 * 180.14726 * 25 23 21 27 27 C 1.39809 * 119.86343 * 359.49058 * 10 9 5 28 28 C 1.37585 * 119.93348 * 0.27736 * 27 10 9 29 29 H 1.09005 * 109.47048 * 296.04644 * 1 2 3 30 30 H 1.09000 * 109.47309 * 56.04938 * 1 2 3 31 31 H 1.08997 * 109.46826 * 176.04804 * 1 2 3 32 32 H 1.08993 * 109.47309 * 183.95631 * 3 2 1 33 33 H 1.09000 * 109.46512 * 303.95763 * 3 2 1 34 34 H 1.09001 * 109.46908 * 63.94808 * 3 2 1 35 35 H 1.09003 * 109.47501 * 314.99528 * 6 5 4 36 36 H 0.96705 * 114.00201 * 179.97438 * 7 6 5 37 37 H 1.48496 * 110.00001 * 299.99793 * 8 6 5 38 38 H 1.48494 * 110.00041 * 61.32095 * 8 6 5 39 39 H 1.07999 * 120.03694 * 180.25992 * 9 5 4 40 40 H 0.97004 * 119.99928 * 0.02562 * 13 11 10 41 41 H 1.09005 * 109.45754 * 35.02071 * 14 13 11 42 42 H 1.08992 * 109.48152 * 60.49640 * 15 14 13 43 43 H 1.09005 * 109.47720 * 300.46536 * 15 14 13 44 44 H 1.08997 * 109.46227 * 180.82365 * 16 15 14 45 45 H 1.09005 * 109.45845 * 60.88530 * 16 15 14 46 46 H 1.09001 * 109.45356 * 61.45861 * 18 17 16 47 47 H 1.08995 * 109.45664 * 181.39025 * 18 17 16 48 48 H 1.09000 * 109.47736 * 299.49577 * 19 14 13 49 49 H 1.08993 * 109.48424 * 59.52786 * 19 14 13 50 50 H 0.97002 * 126.77941 * 298.54405 * 20 17 16 51 51 H 1.08994 * 109.47505 * 0.02919 * 24 23 21 52 52 H 1.09004 * 109.46708 * 120.03202 * 24 23 21 53 53 H 1.09001 * 109.47423 * 240.02362 * 24 23 21 54 54 H 1.08000 * 120.03475 * 180.29938 * 27 10 9 55 55 H 1.08003 * 119.96753 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9673 -0.7249 1.0768 5 6 2.7797 -1.8327 0.8519 6 6 3.1181 -2.2441 -0.5577 7 8 4.0873 -1.3431 -1.0973 8 14 3.8134 -3.9725 -0.5502 9 6 3.2788 -2.5492 1.9157 10 6 2.9607 -2.1696 3.2228 11 6 3.4898 -2.9385 4.3652 12 8 4.1993 -3.9066 4.1702 13 7 3.1868 -2.5680 5.6251 14 6 3.7118 -3.3318 6.7597 15 6 3.7775 -2.4307 7.9944 16 6 4.3374 -3.2264 9.1762 17 6 3.4427 -4.4299 9.4517 18 6 3.3474 -5.3251 8.2212 19 6 2.7914 -4.5209 7.0433 20 7 3.9446 -5.1906 10.6033 21 6 2.9730 -5.1563 11.5351 22 8 3.0599 -5.6926 12.6223 23 7 1.8985 -4.4698 11.1273 24 6 0.6912 -4.2748 11.9340 25 6 2.0667 -3.9769 9.8827 26 8 1.2784 -3.3141 9.2432 27 6 2.1449 -1.0562 3.4454 28 6 1.6530 -0.3412 2.3779 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 2.2169 -2.2177 -1.1703 36 1 4.3529 -1.5481 -2.0042 37 1 5.0426 -4.0218 0.2815 38 1 2.8035 -4.9239 -0.0211 39 1 3.9125 -3.4061 1.7407 40 1 2.6206 -1.7959 5.7807 41 1 4.7115 -3.6951 6.5214 42 1 2.7768 -2.0741 8.2378 43 1 4.4269 -1.5796 7.7890 44 1 4.3708 -2.5891 10.0598 45 1 5.3443 -3.5697 8.9383 46 1 4.3387 -5.7012 7.9683 47 1 2.6845 -6.1640 8.4331 48 1 1.7938 -4.1576 7.2899 49 1 2.7385 -5.1582 6.1607 50 1 4.8058 -5.6307 10.6778 51 1 0.8138 -4.7701 12.8971 52 1 0.5281 -3.2087 12.0918 53 1 -0.1665 -4.7003 11.4131 54 1 1.9014 -0.7576 4.4543 55 1 1.0230 0.5192 2.5492 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_13422196.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:08:01 Heat of formation + Delta-G solvation = -56.338189 kcal Electronic energy + Delta-G solvation = -39418.531646 eV Core-core repulsion = 34423.425194 eV Total energy + Delta-G solvation = -4995.106452 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.90596 -41.83164 -40.80316 -40.04063 -38.84751 -37.74356 -37.37070 -37.21579 -36.09169 -34.36260 -32.95476 -32.19322 -31.52330 -29.69550 -29.00958 -28.53027 -26.92358 -26.30772 -25.04976 -24.20642 -23.55125 -23.01075 -22.84819 -22.44474 -21.21818 -20.61144 -19.20543 -18.98111 -18.31493 -18.08892 -17.95349 -17.80624 -17.49324 -16.85986 -16.67991 -16.59714 -16.33921 -16.31426 -15.97028 -15.91005 -15.75486 -15.52521 -15.07692 -15.01976 -14.94353 -14.64111 -14.40510 -14.32522 -14.13740 -13.89445 -13.84542 -13.76265 -13.64496 -13.56003 -13.47946 -13.34601 -13.05880 -12.93497 -12.75582 -12.63642 -12.36757 -12.29893 -12.17617 -12.05155 -12.02121 -11.87884 -11.23590 -10.97618 -10.95449 -10.56619 -10.32523 -10.27008 -10.18309 -9.86268 -9.54856 -5.04102 -0.49876 0.01866 0.41094 1.09660 1.28326 1.51116 1.59373 1.79586 1.87826 1.94961 2.00317 2.49732 2.72916 2.74693 3.27643 3.34466 3.37061 3.52341 3.59120 3.64877 3.84377 3.87691 3.91007 3.97265 4.05045 4.08891 4.10848 4.16442 4.29190 4.34542 4.37200 4.37591 4.40368 4.40704 4.44208 4.49950 4.51885 4.58549 4.61124 4.68103 4.71814 4.75941 4.83262 4.91259 4.91763 4.96378 4.98372 5.00641 5.01604 5.09545 5.12687 5.16086 5.34154 5.44650 5.69259 5.85116 5.85828 6.22169 6.23322 6.33298 6.95735 6.97128 6.99229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.517 5.517 3 C 0.034 3.966 4 C 0.142 3.858 5 C -0.082 4.082 6 C -0.046 4.046 7 O -0.553 6.553 8 Si 0.754 3.246 9 C -0.082 4.082 10 C -0.152 4.152 11 C 0.560 3.440 12 O -0.579 6.579 13 N -0.704 5.704 14 C 0.148 3.852 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.128 3.872 18 C -0.104 4.104 19 C -0.132 4.132 20 N -0.702 5.702 21 C 0.699 3.301 22 O -0.580 6.580 23 N -0.584 5.584 24 C 0.078 3.922 25 C 0.529 3.471 26 O -0.470 6.470 27 C -0.057 4.057 28 C -0.155 4.155 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.400 0.600 37 H -0.301 1.301 38 H -0.297 1.297 39 H 0.113 0.887 40 H 0.414 0.586 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.452 0.548 51 H 0.094 0.906 52 H 0.091 0.909 53 H 0.087 0.913 54 H 0.164 0.836 55 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 5.628 -3.387 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.238 5.238 3 C -0.112 4.112 4 C 0.047 3.953 5 C -0.083 4.083 6 C -0.157 4.157 7 O -0.362 6.362 8 Si 0.663 3.337 9 C -0.101 4.101 10 C -0.155 4.155 11 C 0.348 3.652 12 O -0.460 6.460 13 N -0.355 5.355 14 C 0.044 3.956 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.037 3.963 18 C -0.143 4.143 19 C -0.171 4.171 20 N -0.366 5.366 21 C 0.400 3.600 22 O -0.456 6.456 23 N -0.330 5.330 24 C -0.062 4.062 25 C 0.317 3.683 26 O -0.339 6.339 27 C -0.076 4.076 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.251 0.749 37 H -0.230 1.230 38 H -0.224 1.224 39 H 0.131 0.869 40 H 0.252 0.748 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.299 0.701 51 H 0.113 0.887 52 H 0.109 0.891 53 H 0.105 0.895 54 H 0.181 0.819 55 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.947 4.428 -2.614 5.498 hybrid contribution -0.452 0.346 1.293 1.413 sum -2.399 4.774 -1.321 5.504 Atomic orbital electron populations 1.22575 0.84372 1.03005 1.02341 1.59364 1.09306 1.15149 1.39983 1.22443 1.00780 0.86080 1.01909 1.18954 0.93818 0.92581 0.89965 1.19490 0.98642 0.95881 0.94317 1.24358 0.96393 1.02797 0.92165 1.86426 1.59912 1.54471 1.35392 0.94902 0.77042 0.74258 0.87544 1.21057 0.97767 0.98822 0.92478 1.19884 1.03592 0.99388 0.92658 1.18328 0.79598 0.83421 0.83852 1.90777 1.39668 1.29537 1.85992 1.45816 1.52358 1.32955 1.04368 1.21044 0.97859 0.91586 0.85139 1.21871 1.03963 0.98475 0.92156 1.21643 0.99573 0.93682 0.99479 1.21187 0.91750 0.94858 0.88511 1.21588 1.04804 0.96976 0.90978 1.21961 1.00518 0.97012 0.97619 1.45540 1.19447 1.57028 1.14561 1.16082 0.80966 0.78847 0.84118 1.91020 1.81117 1.50881 1.22572 1.46455 1.18205 1.50118 1.18229 1.22047 0.83621 1.04356 0.96193 1.20929 0.89003 0.77993 0.80378 1.90749 1.49763 1.35732 1.57702 1.21466 0.93321 0.91816 1.00976 1.21937 1.01726 1.01592 0.92180 0.93989 0.89174 0.91501 0.92005 0.89329 0.94248 0.88883 0.74942 1.23013 1.22438 0.86904 0.74775 0.89738 0.89786 0.88423 0.89309 0.87070 0.87555 0.90616 0.90419 0.92190 0.70051 0.88716 0.89090 0.89470 0.81902 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.34 127.69 1.19 1.11 16 2 N -0.52 -0.15 4.20 -745.10 -3.13 -3.28 16 3 C 0.03 -0.06 9.38 127.69 1.20 1.13 16 4 C 0.14 0.44 4.70 38.47 0.18 0.62 16 5 C -0.08 -0.56 5.30 -19.78 -0.10 -0.66 16 6 C -0.05 -0.13 2.32 71.23 0.17 0.04 16 7 O -0.55 -1.05 12.86 -148.98 -1.92 -2.96 16 8 Si 0.75 2.49 30.20 68.60 2.07 4.56 16 9 C -0.08 -0.83 8.19 22.50 0.18 -0.65 16 10 C -0.15 -0.96 5.88 -20.08 -0.12 -1.08 16 11 C 0.56 4.37 7.73 86.69 0.67 5.04 16 12 O -0.58 -9.36 16.00 -4.00 -0.06 -9.42 16 13 N -0.70 0.11 5.03 -445.69 -2.24 -2.13 16 14 C 0.15 -0.22 2.44 44.99 0.11 -0.11 16 15 C -0.13 0.78 5.14 30.62 0.16 0.93 16 16 C -0.10 0.78 5.10 30.45 0.16 0.94 16 17 C 0.13 -0.52 1.01 2.58 0.00 -0.51 16 18 C -0.10 0.38 5.10 30.44 0.16 0.53 16 19 C -0.13 0.02 5.25 30.63 0.16 0.18 16 20 N -0.70 2.34 5.88 -442.69 -2.60 -0.26 16 21 C 0.70 2.66 8.63 179.37 1.55 4.21 16 22 O -0.58 -6.78 17.24 -3.85 -0.07 -6.85 16 23 N -0.58 -0.89 3.01 -796.76 -2.40 -3.29 16 24 C 0.08 -0.13 10.89 127.77 1.39 1.27 16 25 C 0.53 0.22 6.53 87.78 0.57 0.80 16 26 O -0.47 -1.56 13.94 -2.88 -0.04 -1.60 16 27 C -0.06 0.04 9.53 22.50 0.21 0.26 16 28 C -0.15 0.11 8.53 22.36 0.19 0.31 16 29 H 0.04 -0.22 7.10 -2.38 -0.02 -0.24 16 30 H 0.09 -0.52 8.12 -2.39 -0.02 -0.54 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.09 -0.39 8.12 -2.39 -0.02 -0.41 16 34 H 0.04 -0.15 7.32 -2.39 -0.02 -0.17 16 35 H 0.09 0.00 7.77 -2.39 -0.02 -0.02 16 36 H 0.40 -3.26 8.74 -74.05 -0.65 -3.91 16 37 H -0.30 -3.69 6.74 99.48 0.67 -3.02 16 38 H -0.30 -2.95 7.11 99.48 0.71 -2.24 16 39 H 0.11 1.63 4.47 -2.91 -0.01 1.62 16 40 H 0.41 -2.39 6.62 -92.71 -0.61 -3.01 16 41 H 0.08 0.09 7.58 -2.38 -0.02 0.07 16 42 H 0.08 -0.37 6.11 -2.39 -0.01 -0.39 16 43 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 44 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.11 -1.17 8.14 -2.38 -0.02 -1.19 16 46 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.08 0.12 6.11 -2.39 -0.01 0.11 16 49 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.45 -3.42 8.96 -92.71 -0.83 -4.25 16 51 H 0.09 -0.06 7.45 -2.39 -0.02 -0.08 16 52 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 53 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 54 H 0.16 -1.35 6.39 -2.91 -0.02 -1.37 16 55 H 0.16 -0.89 6.99 -2.91 -0.02 -0.91 16 Total: 0.00 -30.36 432.44 -3.48 -33.84 By element: Atomic # 1 Polarization: -21.82 SS G_CDS: -1.12 Total: -22.94 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 8.03 Total: 14.33 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -10.37 Total: -8.97 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -2.09 Total: -20.84 kcal Atomic # 14 Polarization: 2.49 SS G_CDS: 2.07 Total: 4.56 kcal Total: -30.36 -3.48 -33.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_13422196.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.495 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds