Wall clock time and date at job start Sun Mar 7 2021 15:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33864 * 124.19297 * 2 1 4 4 O 1.21543 * 123.79115 * 0.03179 * 3 2 1 5 5 N 1.34668 * 112.41977 * 179.76467 * 3 2 1 6 6 C 1.46862 * 106.42757 * 0.22691 * 5 3 2 7 7 C 1.52461 * 110.48834 * 241.45833 * 6 5 3 8 8 C 1.53083 * 109.58419 * 178.66514 * 7 6 5 9 9 C 1.53011 * 109.41838 * 59.14377 * 8 7 6 10 10 N 1.46499 * 109.46522 * 179.51622 * 9 8 7 11 11 C 1.34778 * 120.00316 * 275.04319 * 10 9 8 12 12 O 1.21613 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.47382 * 119.99940 * 179.97438 * 11 10 9 14 14 C 1.36412 * 127.19002 * 359.68252 * 13 11 10 15 15 O 1.33653 * 108.39274 * 179.89603 * 14 13 11 16 16 C 1.34214 * 110.91165 * 0.38690 * 15 14 13 17 17 C 1.50700 * 125.44049 * 179.76470 * 16 15 14 18 18 O 1.42900 * 109.46938 * 119.99811 * 17 16 15 19 19 Si 1.86295 * 109.47077 * 359.97438 * 17 16 15 20 20 C 1.34175 * 109.12304 * 359.76423 * 16 15 14 21 21 C 1.52997 * 109.50933 * 299.53128 * 9 8 7 22 22 C 1.52477 * 110.48719 * 118.54255 * 6 5 3 23 23 C 1.34915 * 124.19445 * 180.18243 * 2 1 3 24 24 O 1.21231 * 127.25540 * 359.97438 * 23 2 1 25 25 H 1.08994 * 109.47505 * 0.02919 * 1 2 3 26 26 H 1.09004 * 109.46708 * 120.03202 * 1 2 3 27 27 H 1.09001 * 109.47423 * 240.02362 * 1 2 3 28 28 H 0.97002 * 126.79302 * 180.22541 * 5 3 2 29 29 H 1.09001 * 109.45356 * 298.69746 * 7 6 5 30 30 H 1.08995 * 109.45664 * 58.62910 * 7 6 5 31 31 H 1.09000 * 109.47786 * 299.16452 * 8 7 6 32 32 H 1.08993 * 109.48162 * 179.13373 * 8 7 6 33 33 H 1.09005 * 109.46270 * 59.54186 * 9 8 7 34 34 H 0.97004 * 119.99756 * 95.03680 * 10 9 8 35 35 H 1.07999 * 125.80758 * 0.02562 * 14 13 11 36 36 H 1.08999 * 109.47059 * 239.99666 * 17 16 15 37 37 H 0.96693 * 114.00611 * 299.99708 * 18 17 16 38 38 H 1.48499 * 110.00191 * 58.67985 * 19 17 16 39 39 H 1.48502 * 110.00016 * 179.97438 * 19 17 16 40 40 H 1.07995 * 127.02665 * 180.02562 * 20 16 15 41 41 H 1.08992 * 109.48152 * 300.48271 * 21 9 8 42 42 H 1.09005 * 109.47720 * 180.45166 * 21 9 8 43 43 H 1.08997 * 109.45140 * 301.37437 * 22 6 5 44 44 H 1.09005 * 109.44254 * 61.29636 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7617 2.2341 0.0006 5 7 3.5357 0.8325 0.0051 6 6 3.6548 -0.6313 0.0033 7 6 4.3730 -1.1098 1.2602 8 6 4.4564 -2.6383 1.2531 9 6 5.2126 -3.1007 0.0059 10 7 5.3031 -4.5629 0.0040 11 6 6.2958 -5.1777 0.6771 12 8 7.1168 -4.5185 1.2857 13 6 6.3864 -6.6487 0.6756 14 6 5.5479 -7.5258 0.0523 15 8 5.9793 -8.7671 0.2957 16 6 7.0758 -8.7501 1.0695 17 6 7.8278 -9.9658 1.5464 18 8 9.1736 -9.9110 1.0690 19 14 6.9998 -11.5028 0.8962 20 6 7.3956 -7.4777 1.3507 21 6 4.4670 -2.6343 -1.2460 22 6 4.3836 -1.1058 -1.2491 23 6 2.2233 -1.1159 -0.0036 24 8 1.8376 -2.2652 -0.0068 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5144 -0.8898 27 1 -0.3634 -0.5135 0.8902 28 1 4.2629 1.4744 0.0092 29 1 5.3793 -0.6915 1.2848 30 1 3.8218 -0.7804 2.1409 31 1 3.4501 -3.0571 1.2441 32 1 4.9835 -2.9777 2.1446 33 1 6.2160 -2.6749 0.0109 34 1 4.6483 -5.0887 -0.4817 35 1 4.6836 -7.2620 -0.5392 36 1 7.8295 -9.9877 2.6361 37 1 9.2486 -9.8891 0.1052 38 1 6.9622 -11.4703 -0.5880 39 1 7.7323 -12.7088 1.3589 40 1 8.2251 -7.1328 1.9502 41 1 3.4608 -3.0532 -1.2470 42 1 5.0019 -2.9709 -2.1341 43 1 3.8398 -0.7736 -2.1334 44 1 5.3900 -0.6873 -1.2638 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17849352_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:08:19 Heat of formation + Delta-G solvation = -79.817326 kcal Electronic energy + Delta-G solvation = -31246.896528 eV Core-core repulsion = 26747.892279 eV Total energy + Delta-G solvation = -4499.004249 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.140 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.88375 -43.73207 -40.90136 -39.87992 -38.74323 -38.18245 -37.14419 -35.98631 -34.40364 -33.70485 -32.30392 -31.89313 -29.74983 -29.05116 -26.76405 -25.58165 -24.51190 -24.26217 -23.06924 -22.48374 -22.27450 -21.06520 -20.50188 -19.40932 -19.16528 -18.06034 -18.03499 -17.70109 -17.56632 -17.31081 -17.16294 -16.70343 -16.51111 -16.26504 -16.11096 -15.84136 -15.68801 -15.38899 -15.03013 -14.85270 -14.39663 -14.33843 -14.16520 -13.95806 -13.89637 -13.85669 -13.65918 -13.60594 -13.53528 -12.98218 -12.93791 -12.48481 -12.30983 -12.10578 -11.95163 -11.80812 -11.06784 -10.96353 -10.92143 -10.88883 -10.77579 -10.57836 -10.16296 -9.82462 -5.02302 0.21469 0.46647 0.86603 1.09268 1.11095 1.45273 1.68632 1.88949 1.89356 1.90860 2.02253 2.33603 2.71687 3.10055 3.20340 3.23946 3.35758 3.54708 3.59169 3.79833 3.83229 3.89002 3.97847 4.04349 4.14171 4.22396 4.23946 4.30545 4.37881 4.39487 4.42100 4.45660 4.56773 4.59013 4.63452 4.68901 4.77198 4.83363 4.85358 5.02206 5.13436 5.20441 5.39352 5.64231 5.80277 5.89744 6.20522 6.24042 6.41496 7.00877 7.18223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.580 5.580 3 C 0.702 3.298 4 O -0.539 6.539 5 N -0.719 5.719 6 C 0.120 3.880 7 C -0.109 4.109 8 C -0.138 4.138 9 C 0.151 3.849 10 N -0.723 5.723 11 C 0.590 3.410 12 O -0.531 6.531 13 C -0.238 4.238 14 C 0.033 3.967 15 O -0.166 6.166 16 C -0.057 4.057 17 C -0.035 4.035 18 O -0.520 6.520 19 Si 0.705 3.295 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.107 4.107 23 C 0.532 3.468 24 O -0.455 6.455 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.442 0.558 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.214 0.786 36 H 0.138 0.862 37 H 0.381 0.619 38 H -0.257 1.257 39 H -0.249 1.249 40 H 0.162 0.838 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -2.596 -2.362 4.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.327 5.327 3 C 0.402 3.598 4 O -0.412 6.412 5 N -0.383 5.383 6 C 0.030 3.970 7 C -0.148 4.148 8 C -0.177 4.177 9 C 0.046 3.954 10 N -0.374 5.374 11 C 0.377 3.623 12 O -0.408 6.408 13 C -0.243 4.243 14 C -0.038 4.038 15 O -0.061 6.061 16 C -0.105 4.105 17 C -0.145 4.145 18 O -0.326 6.326 19 Si 0.604 3.396 20 C -0.143 4.143 21 C -0.174 4.174 22 C -0.146 4.146 23 C 0.319 3.681 24 O -0.324 6.324 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.287 0.713 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.231 0.769 36 H 0.155 0.845 37 H 0.229 0.771 38 H -0.181 1.181 39 H -0.174 1.174 40 H 0.180 0.820 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.641 -3.141 -1.875 4.512 hybrid contribution 0.756 0.938 -0.899 1.503 sum -1.885 -2.203 -2.775 4.014 Atomic orbital electron populations 1.21912 0.74687 1.05391 1.03688 1.46347 1.09813 1.07980 1.68602 1.15943 0.82222 0.84187 0.77437 1.91050 1.75155 1.20280 1.54666 1.45602 1.06705 1.07070 1.78925 1.21178 0.94575 0.81453 0.99834 1.21620 1.01670 0.96826 0.94665 1.22068 1.02679 0.93864 0.99088 1.20945 1.00466 0.79446 0.94509 1.45834 1.30442 1.07485 1.53621 1.17256 0.80728 0.85767 0.78506 1.90816 1.40679 1.66232 1.43024 1.21524 1.00872 0.93937 1.07952 1.24494 0.99126 0.80645 0.99506 1.83689 1.37472 1.30297 1.54685 1.22676 0.90500 0.97818 0.99536 1.24376 0.85005 1.01005 1.04082 1.86679 1.23037 1.95492 1.27427 0.94433 0.88227 0.75262 0.81691 1.22532 0.99949 0.90322 1.01463 1.21936 1.02826 0.94685 0.97934 1.21593 1.01798 0.96227 0.95028 1.20641 0.88042 0.84918 0.74506 1.90754 1.78925 1.17521 1.45177 0.88303 0.90232 0.90221 0.71283 0.89048 0.90255 0.89678 0.90081 0.88897 0.76647 0.76941 0.84488 0.77103 1.18062 1.17355 0.82050 0.89309 0.89902 0.90013 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.12 10.89 59.85 0.65 0.54 16 2 N -0.58 -0.15 3.01 -128.24 -0.39 -0.54 16 3 C 0.70 0.98 8.63 -87.83 -0.76 0.22 16 4 O -0.54 -2.74 17.24 5.33 0.09 -2.65 16 5 N -0.72 1.33 5.88 -53.87 -0.32 1.01 16 6 C 0.12 -0.27 1.01 -133.10 -0.13 -0.41 16 7 C -0.11 0.26 5.10 -26.96 -0.14 0.12 16 8 C -0.14 0.17 5.25 -26.68 -0.14 0.03 16 9 C 0.15 -0.26 2.44 -67.93 -0.17 -0.43 16 10 N -0.72 1.15 5.07 -54.89 -0.28 0.87 16 11 C 0.59 1.02 7.78 -12.54 -0.10 0.92 16 12 O -0.53 -3.01 16.65 5.27 0.09 -2.93 16 13 C -0.24 -0.15 6.31 -103.28 -0.65 -0.80 16 14 C 0.03 -0.07 11.61 30.07 0.35 0.28 16 15 O -0.17 0.13 8.89 7.65 0.07 0.20 16 16 C -0.06 0.00 6.20 -35.74 -0.22 -0.22 16 17 C -0.04 0.04 2.97 36.01 0.11 0.14 16 18 O -0.52 -0.16 12.86 -35.23 -0.45 -0.62 16 19 Si 0.71 -1.19 32.09 -169.99 -5.45 -6.64 16 20 C -0.12 -0.18 10.88 -37.45 -0.41 -0.59 16 21 C -0.14 0.45 5.14 -26.69 -0.14 0.31 16 22 C -0.11 0.39 5.10 -26.96 -0.14 0.25 16 23 C 0.53 -0.12 6.53 -10.71 -0.07 -0.19 16 24 O -0.45 -0.51 13.94 5.60 0.08 -0.44 16 25 H 0.10 -0.11 7.45 -51.93 -0.39 -0.50 16 26 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 27 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 28 H 0.44 -1.68 8.96 -40.82 -0.37 -2.04 16 29 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.08 -0.03 6.11 -51.93 -0.32 -0.35 16 32 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.09 -0.05 7.58 -51.93 -0.39 -0.44 16 34 H 0.40 -1.71 7.57 -40.82 -0.31 -2.02 16 35 H 0.21 -1.40 7.47 -52.49 -0.39 -1.80 16 36 H 0.14 -0.31 7.96 -51.93 -0.41 -0.73 16 37 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 38 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 39 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 40 H 0.16 0.33 8.06 -52.49 -0.42 -0.10 16 41 H 0.09 -0.22 6.11 -51.93 -0.32 -0.54 16 42 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 43 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 44 H 0.09 -0.44 8.14 -51.93 -0.42 -0.86 16 LS Contribution 366.78 15.07 5.53 5.53 Total: 0.00 -11.52 366.78 -8.49 -20.01 By element: Atomic # 1 Polarization: -8.48 SS G_CDS: -5.50 Total: -13.98 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.95 Total: 0.17 kcal Atomic # 7 Polarization: 2.33 SS G_CDS: -0.98 Total: 1.35 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.13 Total: -6.43 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.45 Total: -6.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -11.52 -8.49 -20.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.811 kcal (2) G-P(sol) polarization free energy of solvation -11.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds