Wall clock time and date at job start Sun Mar 7 2021 15:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33864 * 124.19297 * 2 1 4 4 O 1.21543 * 123.79115 * 0.03179 * 3 2 1 5 5 N 1.34668 * 112.41977 * 179.76467 * 3 2 1 6 6 C 1.46862 * 106.42757 * 0.22691 * 5 3 2 7 7 C 1.52461 * 110.48834 * 241.45833 * 6 5 3 8 8 C 1.53083 * 109.58419 * 178.66514 * 7 6 5 9 9 C 1.53011 * 109.41838 * 59.14377 * 8 7 6 10 10 N 1.46499 * 109.46522 * 179.51622 * 9 8 7 11 11 C 1.34778 * 120.00316 * 275.04319 * 10 9 8 12 12 O 1.21613 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.47382 * 119.99940 * 179.97438 * 11 10 9 14 14 C 1.36412 * 127.19002 * 359.68252 * 13 11 10 15 15 O 1.33653 * 108.39274 * 179.89603 * 14 13 11 16 16 C 1.34214 * 110.91165 * 0.38690 * 15 14 13 17 17 C 1.50700 * 125.44049 * 179.76470 * 16 15 14 18 18 O 1.42900 * 109.46938 * 119.99811 * 17 16 15 19 19 Si 1.86295 * 109.47077 * 359.97438 * 17 16 15 20 20 C 1.34175 * 109.12304 * 359.76423 * 16 15 14 21 21 C 1.52997 * 109.50933 * 299.53128 * 9 8 7 22 22 C 1.52477 * 110.48719 * 118.54255 * 6 5 3 23 23 C 1.34915 * 124.19445 * 180.18243 * 2 1 3 24 24 O 1.21231 * 127.25540 * 359.97438 * 23 2 1 25 25 H 1.08994 * 109.47505 * 0.02919 * 1 2 3 26 26 H 1.09004 * 109.46708 * 120.03202 * 1 2 3 27 27 H 1.09001 * 109.47423 * 240.02362 * 1 2 3 28 28 H 0.97002 * 126.79302 * 180.22541 * 5 3 2 29 29 H 1.09001 * 109.45356 * 298.69746 * 7 6 5 30 30 H 1.08995 * 109.45664 * 58.62910 * 7 6 5 31 31 H 1.09000 * 109.47786 * 299.16452 * 8 7 6 32 32 H 1.08993 * 109.48162 * 179.13373 * 8 7 6 33 33 H 1.09005 * 109.46270 * 59.54186 * 9 8 7 34 34 H 0.97004 * 119.99756 * 95.03680 * 10 9 8 35 35 H 1.07999 * 125.80758 * 0.02562 * 14 13 11 36 36 H 1.08999 * 109.47059 * 239.99666 * 17 16 15 37 37 H 0.96693 * 114.00611 * 299.99708 * 18 17 16 38 38 H 1.48499 * 110.00191 * 58.67985 * 19 17 16 39 39 H 1.48502 * 110.00016 * 179.97438 * 19 17 16 40 40 H 1.07995 * 127.02665 * 180.02562 * 20 16 15 41 41 H 1.08992 * 109.48152 * 300.48271 * 21 9 8 42 42 H 1.09005 * 109.47720 * 180.45166 * 21 9 8 43 43 H 1.08997 * 109.45140 * 301.37437 * 22 6 5 44 44 H 1.09005 * 109.44254 * 61.29636 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7617 2.2341 0.0006 5 7 3.5357 0.8325 0.0051 6 6 3.6548 -0.6313 0.0033 7 6 4.3730 -1.1098 1.2602 8 6 4.4564 -2.6383 1.2531 9 6 5.2126 -3.1007 0.0059 10 7 5.3031 -4.5629 0.0040 11 6 6.2958 -5.1777 0.6771 12 8 7.1168 -4.5185 1.2857 13 6 6.3864 -6.6487 0.6756 14 6 5.5479 -7.5258 0.0523 15 8 5.9793 -8.7671 0.2957 16 6 7.0758 -8.7501 1.0695 17 6 7.8278 -9.9658 1.5464 18 8 9.1736 -9.9110 1.0690 19 14 6.9998 -11.5028 0.8962 20 6 7.3956 -7.4777 1.3507 21 6 4.4670 -2.6343 -1.2460 22 6 4.3836 -1.1058 -1.2491 23 6 2.2233 -1.1159 -0.0036 24 8 1.8376 -2.2652 -0.0068 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5144 -0.8898 27 1 -0.3634 -0.5135 0.8902 28 1 4.2629 1.4744 0.0092 29 1 5.3793 -0.6915 1.2848 30 1 3.8218 -0.7804 2.1409 31 1 3.4501 -3.0571 1.2441 32 1 4.9835 -2.9777 2.1446 33 1 6.2160 -2.6749 0.0109 34 1 4.6483 -5.0887 -0.4817 35 1 4.6836 -7.2620 -0.5392 36 1 7.8295 -9.9877 2.6361 37 1 9.2486 -9.8891 0.1052 38 1 6.9622 -11.4703 -0.5880 39 1 7.7323 -12.7088 1.3589 40 1 8.2251 -7.1328 1.9502 41 1 3.4608 -3.0532 -1.2470 42 1 5.0019 -2.9709 -2.1341 43 1 3.8398 -0.7736 -2.1334 44 1 5.3900 -0.6873 -1.2638 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:08:17 Heat of formation + Delta-G solvation = -85.647537 kcal Electronic energy + Delta-G solvation = -31247.149345 eV Core-core repulsion = 26747.892279 eV Total energy + Delta-G solvation = -4499.257066 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.140 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.86017 -43.69064 -40.92496 -39.96045 -38.71310 -38.15571 -37.24773 -35.98430 -34.41698 -33.66812 -32.12289 -31.84893 -29.68551 -28.96961 -26.70836 -25.55540 -24.50279 -24.08856 -23.00105 -22.41315 -22.27162 -21.05412 -20.44762 -19.35557 -19.14469 -18.04539 -17.98658 -17.65553 -17.52336 -17.34092 -17.10309 -16.66615 -16.55347 -16.23555 -16.09558 -15.78186 -15.66625 -15.40613 -14.97453 -14.86044 -14.31402 -14.25103 -14.19175 -13.97099 -13.82211 -13.74059 -13.56673 -13.48406 -13.40725 -12.94274 -12.86579 -12.29789 -12.22347 -12.14066 -11.97582 -11.81398 -11.19347 -10.96421 -10.93011 -10.89393 -10.76011 -10.51135 -10.15134 -9.76096 -4.90672 0.29159 0.45928 0.83392 1.13966 1.19838 1.54390 1.76366 1.83698 1.96329 1.99187 2.09376 2.28195 2.78252 3.21660 3.34636 3.40843 3.51442 3.58624 3.73331 3.91934 3.96884 4.00794 4.12144 4.17953 4.32417 4.36142 4.38708 4.42285 4.43783 4.53784 4.54655 4.55529 4.59272 4.72814 4.80514 4.89455 4.91800 4.99188 5.03927 5.14672 5.17569 5.21882 5.46301 5.73089 5.85134 5.90271 6.28195 6.35662 6.50325 6.99592 7.17470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.699 3.301 4 O -0.581 6.581 5 N -0.703 5.703 6 C 0.127 3.873 7 C -0.105 4.105 8 C -0.131 4.131 9 C 0.151 3.849 10 N -0.706 5.706 11 C 0.589 3.411 12 O -0.581 6.581 13 C -0.269 4.269 14 C 0.064 3.936 15 O -0.165 6.165 16 C -0.052 4.052 17 C -0.045 4.045 18 O -0.539 6.539 19 Si 0.791 3.209 20 C -0.150 4.150 21 C -0.126 4.126 22 C -0.106 4.106 23 C 0.530 3.470 24 O -0.468 6.468 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.452 0.548 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.261 0.739 36 H 0.148 0.852 37 H 0.391 0.609 38 H -0.286 1.286 39 H -0.289 1.289 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -3.160 -3.610 5.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C 0.399 3.601 4 O -0.457 6.457 5 N -0.367 5.367 6 C 0.037 3.963 7 C -0.144 4.144 8 C -0.170 4.170 9 C 0.046 3.954 10 N -0.358 5.358 11 C 0.378 3.622 12 O -0.462 6.462 13 C -0.273 4.273 14 C -0.006 4.006 15 O -0.061 6.061 16 C -0.100 4.100 17 C -0.153 4.153 18 O -0.348 6.348 19 Si 0.693 3.307 20 C -0.170 4.170 21 C -0.164 4.164 22 C -0.145 4.145 23 C 0.317 3.683 24 O -0.338 6.338 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.299 0.701 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.277 0.723 36 H 0.165 0.835 37 H 0.241 0.759 38 H -0.213 1.213 39 H -0.216 1.216 40 H 0.162 0.838 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.473 -3.713 -3.142 5.976 hybrid contribution 1.009 1.069 -0.518 1.558 sum -2.464 -2.644 -3.660 5.144 Atomic orbital electron populations 1.22043 0.74110 1.05371 1.04690 1.46457 1.10434 1.07886 1.68270 1.16094 0.83042 0.83774 0.77153 1.91019 1.76024 1.21858 1.56842 1.45555 1.05918 1.07553 1.77626 1.21205 0.93540 0.80882 1.00685 1.21595 1.02360 0.96051 0.94419 1.21958 1.01906 0.94602 0.98574 1.20973 1.00054 0.79226 0.95124 1.45716 1.29714 1.07792 1.52534 1.17460 0.80599 0.86165 0.78022 1.90784 1.42766 1.67262 1.45432 1.21511 1.02136 0.93731 1.09955 1.25307 0.98687 0.79314 0.97292 1.83716 1.37078 1.30929 1.54341 1.22691 0.90612 0.97427 0.99283 1.24676 0.84531 1.01154 1.04947 1.86647 1.23972 1.95563 1.28571 0.93449 0.86615 0.72081 0.78508 1.22548 1.00442 0.91514 1.02501 1.21867 1.02393 0.94753 0.97406 1.21647 1.02595 0.96053 0.94170 1.20927 0.88726 0.84591 0.74030 1.90746 1.79344 1.17897 1.45794 0.88838 0.89071 0.89422 0.70104 0.87663 0.90734 0.90355 0.92082 0.89957 0.74830 0.72332 0.83491 0.75933 1.21257 1.21561 0.83806 0.89692 0.88416 0.89480 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.19 10.89 127.77 1.39 1.20 16 2 N -0.58 -0.36 3.01 -796.76 -2.40 -2.75 16 3 C 0.70 2.14 8.63 179.37 1.55 3.69 16 4 O -0.58 -6.48 17.24 -3.85 -0.07 -6.55 16 5 N -0.70 2.92 5.88 -442.69 -2.60 0.32 16 6 C 0.13 -0.67 1.01 2.58 0.00 -0.67 16 7 C -0.11 0.53 5.10 30.44 0.16 0.68 16 8 C -0.13 0.29 5.25 30.63 0.16 0.45 16 9 C 0.15 -0.59 2.44 44.99 0.11 -0.48 16 10 N -0.71 2.64 5.07 -445.82 -2.26 0.38 16 11 C 0.59 2.42 7.78 86.65 0.67 3.10 16 12 O -0.58 -7.78 16.65 -4.07 -0.07 -7.85 16 13 C -0.27 -0.38 6.31 -18.99 -0.12 -0.50 16 14 C 0.06 -0.40 11.61 67.39 0.78 0.39 16 15 O -0.17 0.48 8.89 4.47 0.04 0.52 16 16 C -0.05 0.00 6.20 24.76 0.15 0.15 16 17 C -0.04 0.08 2.97 71.24 0.21 0.30 16 18 O -0.54 -0.73 12.86 -148.98 -1.92 -2.65 16 19 Si 0.79 -2.85 32.09 68.60 2.20 -0.65 16 20 C -0.15 -0.65 10.88 23.65 0.26 -0.39 16 21 C -0.13 1.03 5.14 30.62 0.16 1.19 16 22 C -0.11 0.93 5.10 30.45 0.16 1.08 16 23 C 0.53 -0.45 6.53 87.78 0.57 0.12 16 24 O -0.47 -0.80 13.94 -2.88 -0.04 -0.84 16 25 H 0.09 -0.12 7.45 -2.39 -0.02 -0.14 16 26 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 27 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.45 -3.74 8.96 -92.71 -0.83 -4.57 16 29 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.08 -0.05 6.11 -2.39 -0.01 -0.06 16 32 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.08 -0.08 7.58 -2.38 -0.02 -0.10 16 34 H 0.41 -4.30 7.57 -92.71 -0.70 -5.00 16 35 H 0.26 -4.41 7.47 -2.91 -0.02 -4.43 16 36 H 0.15 -0.64 7.96 -2.39 -0.02 -0.66 16 37 H 0.39 -1.73 8.70 -74.06 -0.64 -2.37 16 38 H -0.29 -0.39 7.11 99.48 0.71 0.32 16 39 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 40 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.08 -0.56 6.11 -2.39 -0.01 -0.58 16 42 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 43 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.11 -1.29 8.14 -2.38 -0.02 -1.31 16 Total: 0.00 -29.50 366.78 -1.95 -31.45 By element: Atomic # 1 Polarization: -20.64 SS G_CDS: -1.05 Total: -21.69 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.21 Total: 10.31 kcal Atomic # 7 Polarization: 5.21 SS G_CDS: -7.26 Total: -2.05 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -2.05 Total: -17.37 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.20 Total: -0.65 kcal Total: -29.50 -1.95 -31.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.196 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds