Wall clock time and date at job start Sun Mar 7 2021 15:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37930 * 120.07486 * 2 1 4 4 C 1.38383 * 120.14359 * 180.30157 * 3 2 1 5 5 C 1.50701 * 119.85264 * 179.70716 * 4 3 2 6 6 C 1.38335 * 120.29387 * 359.44634 * 4 3 2 7 7 C 1.50702 * 119.93132 * 180.29937 * 6 4 3 8 8 O 1.42897 * 109.47244 * 285.25499 * 7 6 4 9 9 Si 1.86304 * 109.47065 * 165.25212 * 7 6 4 10 10 C 1.37982 * 120.14343 * 0.55482 * 6 4 3 11 11 C 1.39558 * 119.85292 * 359.72631 * 10 6 4 12 12 C 1.47839 * 120.14685 * 180.02562 * 11 10 6 13 13 O 1.21548 * 120.00183 * 186.24504 * 12 11 10 14 14 N 1.34774 * 119.99749 * 6.24847 * 12 11 10 15 15 C 1.46503 * 119.99919 * 180.02562 * 14 12 11 16 16 C 1.53018 * 109.46744 * 275.02374 * 15 14 12 17 17 C 1.53072 * 109.42255 * 179.50468 * 16 15 14 18 18 C 1.52471 * 109.58604 * 59.14962 * 17 16 15 19 19 C 1.52474 * 110.75027 * 301.43842 * 18 17 16 20 20 C 1.53015 * 109.47053 * 155.00044 * 15 14 12 21 21 N 1.46866 * 110.47892 * 178.69995 * 18 17 16 22 22 C 1.34676 * 106.42468 * 241.44489 * 21 18 17 23 23 O 1.21535 * 123.78990 * 180.02562 * 22 21 18 24 24 N 1.33873 * 112.41916 * 359.97438 * 22 21 18 25 25 C 1.46494 * 124.19399 * 180.02562 * 24 22 21 26 26 C 1.34924 * 111.60594 * 0.02562 * 24 22 21 27 27 O 1.21236 * 127.24486 * 179.97438 * 26 24 22 28 28 H 1.08994 * 109.47614 * 96.58765 * 1 2 3 29 29 H 1.09008 * 109.47320 * 216.59188 * 1 2 3 30 30 H 1.09003 * 109.47280 * 336.58700 * 1 2 3 31 31 H 1.07994 * 119.92900 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47697 * 90.00009 * 5 4 3 33 33 H 1.09001 * 109.47182 * 209.99908 * 5 4 3 34 34 H 1.09004 * 109.47177 * 329.99268 * 5 4 3 35 35 H 1.09008 * 109.46730 * 45.25474 * 7 6 4 36 36 H 0.96697 * 114.00170 * 300.00085 * 8 7 6 37 37 H 1.48505 * 109.99758 * 58.68661 * 9 7 6 38 38 H 1.48505 * 109.99567 * 179.97438 * 9 7 6 39 39 H 1.08003 * 120.07794 * 179.74334 * 10 6 4 40 40 H 0.97003 * 120.00626 * 359.97438 * 14 12 11 41 41 H 1.09002 * 109.47010 * 35.00621 * 15 14 12 42 42 H 1.09003 * 109.47541 * 299.49476 * 16 15 14 43 43 H 1.09003 * 109.47783 * 59.51705 * 16 15 14 44 44 H 1.08999 * 109.45458 * 299.11047 * 17 16 15 45 45 H 1.09001 * 109.45361 * 179.18198 * 17 16 15 46 46 H 1.08998 * 109.45540 * 298.52563 * 19 18 17 47 47 H 1.09004 * 109.44879 * 178.59794 * 19 18 17 48 48 H 1.09005 * 109.47375 * 300.47251 * 20 15 14 49 49 H 1.08994 * 109.47960 * 60.50328 * 20 15 14 50 50 H 0.97004 * 126.78795 * 61.41932 * 21 18 17 51 51 H 1.09004 * 109.47676 * 359.97438 * 25 24 22 52 52 H 1.08998 * 109.46959 * 119.97801 * 25 24 22 53 53 H 1.09001 * 109.47350 * 239.97773 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1953 -0.0063 5 6 4.3305 2.5032 -0.0129 6 6 4.2813 0.0017 -0.0011 7 6 5.7882 0.0131 -0.0012 8 8 6.2619 0.3655 -1.3025 9 14 6.4221 -1.6788 0.4534 10 6 3.6020 -1.1993 -0.0011 11 6 2.2064 -1.2081 -0.0006 12 6 1.4720 -2.4912 -0.0001 13 8 0.2619 -2.4989 -0.1142 14 7 2.1443 -3.6524 0.1270 15 6 1.4167 -4.9239 0.1270 16 6 0.9186 -5.2264 1.5418 17 6 0.1479 -6.5490 1.5382 18 6 1.0593 -7.6703 1.0518 19 6 1.5842 -7.3710 -0.3481 20 6 2.3490 -6.0451 -0.3368 21 7 0.3479 -8.9551 1.0699 22 6 1.0182 -9.7495 1.9263 23 8 0.6966 -10.8938 2.1795 24 7 2.0791 -9.1374 2.4666 25 6 2.9881 -9.7628 3.4303 26 6 2.2073 -7.8730 2.0135 27 8 3.0631 -7.0688 2.3147 28 1 -0.3634 -0.1179 -1.0208 29 1 -0.3634 -0.8252 0.6126 30 1 -0.3634 0.9431 0.4084 31 1 1.6583 2.1289 0.0004 32 1 4.5157 2.8212 1.0131 33 1 5.2811 2.3752 -0.5308 34 1 3.7363 3.2594 -0.5261 35 1 6.1461 0.7425 0.7256 36 1 5.9811 -0.2415 -2.0010 37 1 5.9151 -2.6873 -0.5117 38 1 7.9071 -1.6809 0.4562 39 1 4.1490 -2.1306 -0.0012 40 1 3.1101 -3.6463 0.2177 41 1 0.5657 -4.8555 -0.5507 42 1 1.7699 -5.3036 2.2181 43 1 0.2611 -4.4235 1.8751 44 1 -0.7122 -6.4662 0.8737 45 1 -0.1948 -6.7723 2.5486 46 1 0.7469 -7.3012 -1.0425 47 1 2.2518 -8.1725 -0.6645 48 1 2.7102 -5.8252 -1.3414 49 1 3.1955 -6.1195 0.3458 50 1 -0.4477 -9.1857 0.5651 51 1 2.6619 -10.7841 3.6275 52 1 3.9981 -9.7767 3.0208 53 1 2.9805 -9.1932 4.3596 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_9599494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:10:49 Heat of formation + Delta-G solvation = -77.784408 kcal Electronic energy + Delta-G solvation = -37567.646362 eV Core-core repulsion = 32792.573462 eV Total energy + Delta-G solvation = -4775.072900 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.84857 -41.71169 -40.47101 -39.85493 -38.75520 -37.74534 -37.22987 -36.04520 -34.46993 -34.35045 -33.09938 -32.11436 -30.11337 -29.12272 -28.94051 -28.22611 -25.66077 -25.09338 -24.11801 -23.69510 -23.28401 -22.68376 -21.87099 -21.13560 -20.47817 -19.16441 -19.05535 -18.03606 -17.84210 -17.55545 -17.43345 -16.75310 -16.61287 -16.55183 -16.41409 -16.26988 -16.12061 -15.81831 -15.69645 -15.44144 -14.96729 -14.91695 -14.70113 -14.50743 -14.34644 -14.21873 -14.00380 -13.90322 -13.75950 -13.70065 -13.53234 -13.39971 -13.38873 -13.05253 -12.90090 -12.72137 -12.67824 -12.51156 -12.28402 -12.17947 -11.96332 -11.94605 -11.79349 -11.77542 -10.92821 -10.88583 -10.65722 -10.56925 -10.50173 -10.15341 -9.87793 -9.58358 -4.93793 -0.21976 0.19123 0.46773 1.14651 1.28429 1.52780 1.76562 1.84284 1.93916 2.00063 2.11195 2.66928 2.79092 3.35695 3.41231 3.42151 3.51390 3.62025 3.71023 3.75715 3.84411 3.93718 3.98735 4.11865 4.17545 4.19986 4.25836 4.36819 4.39091 4.43871 4.49215 4.53032 4.55842 4.56576 4.58532 4.60599 4.71955 4.73180 4.79487 4.81223 4.84001 4.89883 4.93498 5.00036 5.04558 5.06874 5.16345 5.18293 5.23176 5.30682 5.49033 5.52090 5.55152 5.73798 5.83460 5.90925 6.29109 6.47353 6.48932 7.00310 7.16997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.024 4.024 3 C -0.137 4.137 4 C -0.029 4.029 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.076 4.076 8 O -0.542 6.542 9 Si 0.747 3.253 10 C -0.075 4.075 11 C -0.158 4.158 12 C 0.560 3.440 13 O -0.556 6.556 14 N -0.714 5.714 15 C 0.150 3.850 16 C -0.131 4.131 17 C -0.104 4.104 18 C 0.127 3.873 19 C -0.104 4.104 20 C -0.130 4.130 21 N -0.702 5.702 22 C 0.699 3.301 23 O -0.581 6.581 24 N -0.584 5.584 25 C 0.078 3.922 26 C 0.528 3.472 27 O -0.468 6.468 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.386 0.614 37 H -0.265 1.265 38 H -0.300 1.300 39 H 0.143 0.857 40 H 0.408 0.592 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.452 0.548 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 1.654 -0.210 2.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.025 4.025 3 C -0.155 4.155 4 C -0.030 4.030 5 C -0.183 4.183 6 C -0.135 4.135 7 C -0.185 4.185 8 O -0.350 6.350 9 Si 0.651 3.349 10 C -0.093 4.093 11 C -0.162 4.162 12 C 0.349 3.651 13 O -0.436 6.436 14 N -0.365 5.365 15 C 0.046 3.954 16 C -0.170 4.170 17 C -0.143 4.143 18 C 0.037 3.963 19 C -0.143 4.143 20 C -0.169 4.169 21 N -0.366 5.366 22 C 0.399 3.601 23 O -0.458 6.458 24 N -0.331 5.331 25 C -0.062 4.062 26 C 0.316 3.684 27 O -0.338 6.338 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.144 0.856 36 H 0.235 0.765 37 H -0.191 1.191 38 H -0.228 1.228 39 H 0.161 0.839 40 H 0.244 0.756 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.299 0.701 51 H 0.112 0.888 52 H 0.108 0.892 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.581 1.210 0.164 1.998 hybrid contribution -0.017 -0.060 -1.134 1.136 sum 1.564 1.151 -0.971 2.171 Atomic orbital electron populations 1.21020 0.90005 1.03285 1.03049 1.20222 0.97025 0.91908 0.93377 1.21193 0.93688 0.98029 1.02582 1.20217 0.93458 0.95853 0.93451 1.21006 1.00722 0.92964 1.03604 1.20067 0.96323 0.92673 1.04392 1.25097 0.91235 1.13932 0.88217 1.86577 1.76411 1.55000 1.17031 0.94242 0.77713 0.73674 0.89243 1.21315 0.92778 0.98327 0.96871 1.19690 0.93664 0.93015 1.09787 1.18357 0.86826 0.84209 0.75749 1.90727 1.14695 1.87409 1.50817 1.45923 1.11349 1.05312 1.73952 1.20997 0.95436 0.82008 0.96930 1.21963 1.00846 0.96471 0.97739 1.21598 0.98012 0.91353 1.03337 1.21207 0.91152 0.86241 0.97725 1.21626 1.02415 0.97992 0.92276 1.21897 0.98718 0.92511 1.03747 1.45549 1.31900 1.12534 1.46622 1.16095 0.80091 0.84264 0.79609 1.91016 1.71113 1.17161 1.66460 1.46462 1.28036 1.15475 1.43096 1.22038 0.92815 0.99929 0.91431 1.20962 0.85985 0.80731 0.80749 1.90755 1.36837 1.47071 1.59106 0.91263 0.90078 0.90948 0.83802 0.89430 0.90434 0.90652 0.85623 0.76507 1.19067 1.22826 0.83943 0.75569 0.89329 0.90562 0.91462 0.87433 0.90631 0.86988 0.89718 0.88879 0.90042 0.70084 0.88833 0.89183 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 8.73 71.23 0.62 0.23 16 2 C -0.02 -0.07 5.91 -19.61 -0.12 -0.19 16 3 C -0.14 -0.07 9.31 22.23 0.21 0.14 16 4 C -0.03 0.01 5.89 -19.81 -0.12 -0.10 16 5 C -0.13 0.37 9.31 71.24 0.66 1.03 16 6 C -0.13 0.20 5.26 -19.90 -0.10 0.10 16 7 C -0.08 0.22 1.88 71.24 0.13 0.36 16 8 O -0.54 0.23 11.89 -148.98 -1.77 -1.54 16 9 Si 0.75 -3.13 30.24 68.60 2.07 -1.05 16 10 C -0.07 0.13 8.13 22.53 0.18 0.31 16 11 C -0.16 -0.35 5.87 -20.09 -0.12 -0.47 16 12 C 0.56 1.88 7.67 86.79 0.67 2.55 16 13 O -0.56 -4.89 13.01 -3.87 -0.05 -4.94 16 14 N -0.71 1.47 5.03 -445.36 -2.24 -0.77 16 15 C 0.15 -0.55 2.44 45.00 0.11 -0.44 16 16 C -0.13 0.35 5.25 30.62 0.16 0.51 16 17 C -0.10 0.58 5.10 30.44 0.16 0.74 16 18 C 0.13 -0.65 1.01 2.57 0.00 -0.65 16 19 C -0.10 0.86 5.10 30.44 0.16 1.01 16 20 C -0.13 0.88 5.14 30.62 0.16 1.04 16 21 N -0.70 2.94 5.88 -442.69 -2.60 0.34 16 22 C 0.70 2.22 8.63 179.37 1.55 3.77 16 23 O -0.58 -6.52 17.24 -3.83 -0.07 -6.59 16 24 N -0.58 -0.53 3.01 -796.77 -2.40 -2.93 16 25 C 0.08 -0.16 10.89 127.77 1.39 1.23 16 26 C 0.53 -0.21 6.53 87.77 0.57 0.36 16 27 O -0.47 -1.14 13.94 -2.89 -0.04 -1.18 16 28 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.55 5.86 -2.38 -0.01 0.53 16 30 H 0.07 0.00 8.04 -2.39 -0.02 -0.02 16 31 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.08 -0.09 6.18 -2.39 -0.01 -0.10 16 34 H 0.07 -0.29 8.08 -2.38 -0.02 -0.31 16 35 H 0.13 -0.56 7.40 -2.38 -0.02 -0.57 16 36 H 0.39 -2.16 8.70 -74.06 -0.64 -2.81 16 37 H -0.26 0.81 6.68 99.48 0.66 1.48 16 38 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 39 H 0.14 -0.82 3.25 -2.91 -0.01 -0.83 16 40 H 0.41 -2.32 6.68 -92.71 -0.62 -2.93 16 41 H 0.09 -0.18 7.58 -2.39 -0.02 -0.20 16 42 H 0.08 -0.03 6.11 -2.39 -0.01 -0.05 16 43 H 0.07 0.04 8.14 -2.39 -0.02 0.03 16 44 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 47 H 0.08 -0.68 8.14 -2.39 -0.02 -0.69 16 48 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 49 H 0.08 -0.37 6.11 -2.39 -0.01 -0.39 16 50 H 0.45 -3.82 8.96 -92.71 -0.83 -4.65 16 51 H 0.09 -0.09 7.45 -2.39 -0.02 -0.11 16 52 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 53 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -22.09 411.95 -1.92 -24.02 By element: Atomic # 1 Polarization: -15.76 SS G_CDS: -1.10 Total: -16.86 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.27 Total: 11.52 kcal Atomic # 7 Polarization: 3.88 SS G_CDS: -7.24 Total: -3.36 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.93 Total: -14.26 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.07 Total: -1.05 kcal Total: -22.09 -1.92 -24.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_9599494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.768 kcal (2) G-P(sol) polarization free energy of solvation -22.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds