Wall clock time and date at job start Sun Mar 7 2021 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.33873 * 124.19379 * 2 1 4 4 O 1.21543 * 123.78882 * 0.03183 * 3 2 1 5 5 N 1.34668 * 112.42210 * 179.76469 * 3 2 1 6 6 C 1.46850 * 106.41770 * 0.23097 * 5 3 2 7 7 C 1.52476 * 110.48844 * 241.43304 * 6 5 3 8 8 C 1.53095 * 109.51966 * 296.01693 * 7 6 5 9 9 C 1.52994 * 109.42006 * 300.84033 * 8 7 6 10 10 N 1.46505 * 109.45545 * 180.42494 * 9 8 7 11 11 C 1.34777 * 119.99812 * 84.89598 * 10 9 8 12 12 O 1.21279 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99644 * 180.02562 * 11 10 9 14 14 N 1.46504 * 109.47128 * 180.02562 * 13 11 10 15 15 C 1.36835 * 125.05626 * 265.02666 * 14 13 11 16 16 C 1.34243 * 109.93526 * 179.97438 * 15 14 13 17 17 C 1.50697 * 126.49955 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.47138 * 254.97044 * 17 16 15 19 19 Si 1.86301 * 109.47116 * 14.97166 * 17 16 15 20 20 C 1.46488 * 106.99758 * 359.97438 * 16 15 14 21 21 C 1.39598 * 134.03742 * 180.02562 * 20 16 15 22 22 C 1.36664 * 119.76339 * 179.97438 * 21 20 16 23 23 C 1.38780 * 120.53046 * 0.02562 * 22 21 20 24 24 C 1.37790 * 120.66834 * 359.97438 * 23 22 21 25 25 C 1.37690 * 125.06896 * 84.71294 * 14 13 11 26 26 C 1.53005 * 109.57274 * 60.39667 * 9 8 7 27 27 C 1.52475 * 110.48358 * 118.55394 * 6 5 3 28 28 C 1.34917 * 124.20013 * 180.18251 * 2 1 3 29 29 O 1.21231 * 127.25124 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.47687 * 0.02917 * 1 2 3 31 31 H 1.09001 * 109.46906 * 120.02798 * 1 2 3 32 32 H 1.08998 * 109.47619 * 240.02756 * 1 2 3 33 33 H 0.97005 * 126.78744 * 180.21065 * 5 3 2 34 34 H 1.08995 * 109.46073 * 56.03321 * 7 6 5 35 35 H 1.09002 * 109.46310 * 176.00600 * 7 6 5 36 36 H 1.08999 * 109.47999 * 180.85011 * 8 7 6 37 37 H 1.09007 * 109.47512 * 60.81776 * 8 7 6 38 38 H 1.09003 * 109.44044 * 300.37389 * 9 8 7 39 39 H 0.96995 * 119.99863 * 264.90104 * 10 9 8 40 40 H 1.09003 * 109.47184 * 299.99897 * 13 11 10 41 41 H 1.08994 * 109.47460 * 60.00418 * 13 11 10 42 42 H 1.08001 * 125.03728 * 359.95968 * 15 14 13 43 43 H 1.09004 * 109.47113 * 134.97605 * 17 16 15 44 44 H 0.96698 * 113.99441 * 59.99874 * 18 17 16 45 45 H 1.48493 * 110.00315 * 58.68437 * 19 17 16 46 46 H 1.48507 * 109.99645 * 180.02562 * 19 17 16 47 47 H 1.07996 * 120.11473 * 359.97438 * 21 20 16 48 48 H 1.07998 * 119.73047 * 180.02562 * 22 21 20 49 49 H 1.08001 * 119.67196 * 180.02562 * 23 22 21 50 50 H 1.08000 * 120.11640 * 180.02562 * 24 23 22 51 51 H 1.09000 * 109.48410 * 179.61765 * 26 9 8 52 52 H 1.08995 * 109.48469 * 59.57809 * 26 9 8 53 53 H 1.09002 * 109.46714 * 183.98711 * 27 6 5 54 54 H 1.08997 * 109.46800 * 303.96505 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7616 2.2341 0.0006 5 7 3.5356 0.8326 0.0051 6 6 3.6546 -0.6311 0.0032 7 6 4.3733 -1.1098 1.2599 8 6 5.8089 -0.5779 1.2622 9 6 6.5388 -1.0786 0.0143 10 7 7.9158 -0.5783 0.0208 11 6 8.8727 -1.2475 0.6939 12 8 8.5939 -2.2640 1.2938 13 6 10.2890 -0.7326 0.7011 14 7 11.1310 -1.6304 1.4956 15 6 11.4370 -1.4557 2.8178 16 6 12.2269 -2.4554 3.2407 17 6 12.7836 -2.6315 4.6300 18 8 14.1714 -2.2909 4.6338 19 14 11.8680 -1.5195 5.8115 20 6 12.4441 -3.3431 2.0959 21 6 13.1597 -4.5270 1.9080 22 6 13.1637 -5.1299 0.6816 23 6 12.4623 -4.5744 -0.3794 24 6 11.7495 -3.4066 -0.2161 25 6 11.7273 -2.7787 1.0249 26 6 5.8191 -0.5734 -1.2379 27 6 4.3836 -1.1055 -1.2491 28 6 2.2233 -1.1159 -0.0036 29 8 1.8376 -2.2652 -0.0068 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5143 -0.8898 32 1 -0.3634 -0.5134 0.8902 33 1 4.2628 1.4746 0.0090 34 1 3.8481 -0.7415 2.1411 35 1 4.3898 -2.1995 1.2761 36 1 6.3266 -0.9328 2.1532 37 1 5.7926 0.5121 1.2609 38 1 6.5486 -2.1686 0.0126 39 1 8.1388 0.2345 -0.4593 40 1 10.6658 -0.6914 -0.3209 41 1 10.3103 0.2663 1.1367 42 1 11.0941 -0.6351 3.4305 43 1 12.6635 -3.6694 4.9407 44 1 14.3534 -1.3794 4.3669 45 1 10.4187 -1.8424 5.7932 46 1 12.4081 -1.6834 7.1851 47 1 13.7081 -4.9648 2.7289 48 1 13.7171 -6.0459 0.5369 49 1 12.4747 -5.0628 -1.3426 50 1 11.2065 -2.9823 -1.0477 51 1 6.3442 -0.9253 -2.1259 52 1 5.8027 0.5164 -1.2330 53 1 4.4004 -2.1953 -1.2688 54 1 3.8657 -0.7344 -2.1335 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:10:54 Heat of formation + Delta-G solvation = -35.049160 kcal Electronic energy + Delta-G solvation = -39999.033288 eV Core-core repulsion = 34903.935335 eV Total energy + Delta-G solvation = -5095.097953 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.183 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.86822 -42.50529 -40.92755 -39.90838 -39.21787 -38.08350 -37.60479 -37.08198 -35.96244 -34.24377 -33.76312 -32.14688 -31.54053 -30.39662 -30.20560 -29.09410 -28.39928 -25.89450 -25.03523 -24.18833 -23.83283 -23.42235 -22.58391 -21.81740 -21.49036 -21.04223 -20.59332 -19.15349 -18.63943 -18.37966 -17.99447 -17.80743 -17.63915 -17.30700 -16.91053 -16.71905 -16.60712 -16.41872 -16.28297 -16.03930 -15.87105 -15.57045 -15.35843 -15.34991 -15.27057 -14.87842 -14.69528 -14.49772 -14.41790 -14.26231 -14.05562 -13.87738 -13.64017 -13.59696 -13.50457 -13.38791 -13.11128 -13.08900 -12.70300 -12.56450 -12.36405 -12.25927 -12.11449 -12.05935 -11.93802 -11.81012 -11.66848 -11.32392 -11.02875 -11.00154 -10.56775 -10.52613 -10.30226 -10.12987 -9.13964 -8.60466 -5.05464 0.15650 0.39871 0.64624 1.10983 1.34815 1.45234 1.52243 1.65401 1.77319 1.81517 1.98049 2.00546 2.21246 2.76554 2.96047 3.27762 3.37022 3.61055 3.66488 3.70675 3.72069 3.78064 3.89599 3.91617 3.95814 4.07100 4.09053 4.13479 4.21444 4.23516 4.27760 4.31849 4.34138 4.35734 4.42714 4.49178 4.53143 4.57191 4.60302 4.70447 4.73018 4.75774 4.80182 4.84987 4.89624 4.95842 4.97658 5.14536 5.14941 5.17628 5.44411 5.51525 5.67004 5.71278 5.74323 5.76661 5.86755 6.21151 6.22034 6.26750 6.54117 6.89750 6.98382 7.21389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.701 3.299 4 O -0.577 6.577 5 N -0.694 5.694 6 C 0.134 3.866 7 C -0.108 4.108 8 C -0.117 4.117 9 C 0.144 3.856 10 N -0.705 5.705 11 C 0.491 3.509 12 O -0.571 6.571 13 C 0.086 3.914 14 N -0.465 5.465 15 C 0.082 3.918 16 C -0.228 4.228 17 C -0.042 4.042 18 O -0.561 6.561 19 Si 0.803 3.197 20 C -0.118 4.118 21 C -0.093 4.093 22 C -0.155 4.155 23 C -0.110 4.110 24 C -0.131 4.131 25 C 0.092 3.908 26 C -0.112 4.112 27 C -0.109 4.109 28 C 0.527 3.473 29 O -0.488 6.488 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.451 0.549 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.423 0.577 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.209 0.791 43 H 0.086 0.914 44 H 0.393 0.607 45 H -0.293 1.293 46 H -0.300 1.300 47 H 0.114 0.886 48 H 0.133 0.867 49 H 0.145 0.855 50 H 0.136 0.864 51 H 0.096 0.904 52 H 0.098 0.902 53 H 0.089 0.911 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 8.823 -5.604 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C 0.402 3.598 4 O -0.453 6.453 5 N -0.359 5.359 6 C 0.043 3.957 7 C -0.147 4.147 8 C -0.156 4.156 9 C 0.039 3.961 10 N -0.358 5.358 11 C 0.276 3.724 12 O -0.449 6.449 13 C -0.038 4.038 14 N -0.147 5.147 15 C -0.043 4.043 16 C -0.235 4.235 17 C -0.151 4.151 18 O -0.369 6.369 19 Si 0.708 3.292 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.174 4.174 23 C -0.129 4.129 24 C -0.152 4.152 25 C -0.013 4.013 26 C -0.150 4.150 27 C -0.148 4.148 28 C 0.315 3.685 29 O -0.358 6.358 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.300 0.700 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.261 0.739 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.225 0.775 43 H 0.104 0.896 44 H 0.243 0.757 45 H -0.221 1.221 46 H -0.228 1.228 47 H 0.132 0.868 48 H 0.151 0.849 49 H 0.162 0.838 50 H 0.154 0.846 51 H 0.115 0.885 52 H 0.116 0.884 53 H 0.107 0.893 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.163 7.726 -4.469 8.927 hybrid contribution 0.028 -0.773 -0.137 0.785 sum 0.191 6.953 -4.607 8.343 Atomic orbital electron populations 1.22043 0.74190 1.05539 1.04528 1.46464 1.10470 1.07954 1.68116 1.16041 0.83054 0.83591 0.77125 1.91026 1.75982 1.21598 1.56677 1.45470 1.05650 1.07165 1.77641 1.21083 0.92525 0.81429 1.00648 1.21603 0.96205 1.02378 0.94533 1.21824 0.93062 1.02231 0.98486 1.20951 0.80687 0.99246 0.95194 1.45791 1.07624 1.29514 1.52900 1.21469 0.88533 0.83837 0.78511 1.90826 1.83129 1.26346 1.44634 1.22050 0.85862 0.95270 1.00627 1.43455 1.41651 1.20354 1.09285 1.22059 0.97932 1.00320 0.84033 1.20775 1.08206 0.98619 0.95891 1.24583 0.87374 1.05390 0.97787 1.86455 1.22822 1.36523 1.91076 0.94158 0.74435 0.85731 0.74828 1.19368 1.01667 0.97115 0.94100 1.20433 0.98532 0.94341 0.97812 1.20896 1.02060 1.01419 0.93003 1.21121 0.96780 0.95262 0.99703 1.20256 1.03140 0.97207 0.94554 1.18369 0.98093 0.89465 0.95386 1.21742 0.93103 1.02817 0.97358 1.21659 0.96053 1.02821 0.94267 1.21075 0.89244 0.84444 0.73770 1.90821 1.79726 1.18828 1.46450 0.88351 0.89368 0.89634 0.70037 0.90520 0.89875 0.92096 0.89002 0.91475 0.73885 0.83826 0.81353 0.77470 0.89642 0.75690 1.22061 1.22821 0.86837 0.84876 0.83750 0.84617 0.88545 0.88381 0.89285 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.13 10.89 127.77 1.39 1.26 16 2 N -0.58 -0.53 3.01 -796.79 -2.40 -2.93 16 3 C 0.70 1.00 8.63 179.37 1.55 2.55 16 4 O -0.58 -5.18 17.24 -3.85 -0.07 -5.25 16 5 N -0.69 4.63 5.23 -442.72 -2.31 2.32 16 6 C 0.13 -0.77 0.84 2.58 0.00 -0.77 16 7 C -0.11 0.59 4.98 30.45 0.15 0.74 16 8 C -0.12 0.98 5.38 30.62 0.16 1.15 16 9 C 0.14 -1.36 2.44 44.99 0.11 -1.25 16 10 N -0.70 8.87 5.08 -442.52 -2.25 6.62 16 11 C 0.49 -2.60 7.86 87.66 0.69 -1.92 16 12 O -0.57 -4.19 16.08 -3.03 -0.05 -4.24 16 13 C 0.09 -0.95 6.48 85.63 0.56 -0.39 16 14 N -0.47 0.46 2.27 -519.98 -1.18 -0.72 16 15 C 0.08 -0.11 9.89 83.00 0.82 0.71 16 16 C -0.23 -1.07 5.58 -18.63 -0.10 -1.17 16 17 C -0.04 -0.16 3.06 71.23 0.22 0.06 16 18 O -0.56 -2.12 12.88 -148.98 -1.92 -4.04 16 19 Si 0.80 -0.91 30.75 68.60 2.11 1.20 16 20 C -0.12 -1.10 6.35 -20.20 -0.13 -1.23 16 21 C -0.09 -0.91 10.05 22.23 0.22 -0.69 16 22 C -0.15 -1.04 9.97 22.03 0.22 -0.82 16 23 C -0.11 -0.47 10.01 22.29 0.22 -0.25 16 24 C -0.13 -0.50 10.00 22.37 0.22 -0.28 16 25 C 0.09 0.52 6.80 39.03 0.27 0.79 16 26 C -0.11 1.57 5.28 30.63 0.16 1.73 16 27 C -0.11 0.99 4.98 30.45 0.15 1.15 16 28 C 0.53 0.58 6.95 87.77 0.61 1.19 16 29 O -0.49 -3.56 17.86 -2.88 -0.05 -3.61 16 30 H 0.10 -0.14 7.45 -2.38 -0.02 -0.16 16 31 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.45 -5.38 7.70 -92.70 -0.71 -6.10 16 34 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.09 -1.17 7.33 -2.38 -0.02 -1.19 16 38 H 0.07 -0.17 7.58 -2.39 -0.02 -0.19 16 39 H 0.42 -8.64 8.60 -92.71 -0.80 -9.44 16 40 H 0.14 -2.27 8.14 -2.39 -0.02 -2.29 16 41 H 0.17 -3.36 8.12 -2.39 -0.02 -3.38 16 42 H 0.21 -2.14 6.35 -2.91 -0.02 -2.16 16 43 H 0.09 0.65 7.96 -2.39 -0.02 0.64 16 44 H 0.39 -2.18 8.70 -74.06 -0.64 -2.82 16 45 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 46 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 47 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 49 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 50 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 51 H 0.10 -1.44 8.14 -2.39 -0.02 -1.46 16 52 H 0.10 -1.78 7.33 -2.39 -0.02 -1.80 16 53 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 54 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -40.51 443.66 -1.76 -42.26 By element: Atomic # 1 Polarization: -33.04 SS G_CDS: -1.14 Total: -34.18 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 7.50 Total: 2.57 kcal Atomic # 7 Polarization: 13.43 SS G_CDS: -8.14 Total: 5.29 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -2.09 Total: -17.14 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: 2.11 Total: 1.20 kcal Total: -40.51 -1.76 -42.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.214 kcal (2) G-P(sol) polarization free energy of solvation -40.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds