Wall clock time and date at job start Sun Mar 7 2021 08:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47725 * 282.11959 * 3 2 1 5 5 C 1.53003 * 109.47399 * 42.12526 * 3 2 1 6 6 C 1.53002 * 109.47365 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46918 * 299.99575 * 6 5 3 8 8 H 1.08994 * 109.47199 * 300.00098 * 7 6 5 9 9 C 1.52999 * 109.47069 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.46684 * 65.00525 * 9 7 6 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21623 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.47296 * 119.99903 * 179.97438 * 11 10 9 14 14 C 1.39821 * 120.13831 * 359.72679 * 13 11 10 15 15 C 1.37585 * 119.96513 * 179.67534 * 14 13 11 16 16 C 1.50692 * 119.88100 * 180.29257 * 15 14 13 17 17 O 1.42907 * 109.47007 * 105.32017 * 16 15 14 18 18 Si 1.86302 * 109.47144 * 345.32806 * 16 15 14 19 19 C 1.39148 * 120.23839 * 0.62248 * 15 14 13 20 20 O 1.35712 * 119.86150 * 179.69720 * 19 15 14 21 21 C 1.42904 * 117.00011 * 179.97438 * 20 19 15 22 22 C 1.38732 * 120.27291 * 359.67236 * 19 15 14 23 23 C 1.38400 * 120.03261 * 0.02562 * 22 19 15 24 24 O 1.35656 * 120.11726 * 179.97438 * 23 22 19 25 25 C 1.42901 * 117.00174 * 0.02973 * 24 23 22 26 26 C 1.53003 * 109.46755 * 60.00051 * 7 6 5 27 27 C 1.52993 * 109.47495 * 299.99683 * 26 7 6 28 28 H 4.18744 * 15.03899 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.46883 * 300.00010 * 5 3 2 30 30 H 1.08994 * 109.47229 * 59.99555 * 5 3 2 31 31 H 1.09000 * 109.47089 * 179.97438 * 6 5 3 32 32 H 1.08994 * 109.47265 * 59.99632 * 6 5 3 33 33 H 1.09000 * 109.47486 * 305.00460 * 9 7 6 34 34 H 1.09001 * 109.47362 * 184.99737 * 9 7 6 35 35 H 0.96995 * 120.00050 * 359.72237 * 10 9 7 36 36 H 1.07996 * 120.01267 * 359.97438 * 14 13 11 37 37 H 1.08995 * 109.47619 * 225.32598 * 16 15 14 38 38 H 0.96696 * 114.00249 * 300.00619 * 17 16 15 39 39 H 1.48496 * 110.00045 * 180.02562 * 18 16 15 40 40 H 1.48500 * 109.99788 * 301.31365 * 18 16 15 41 41 H 1.09000 * 109.47143 * 300.00522 * 21 20 19 42 42 H 1.09005 * 109.46395 * 60.00212 * 21 20 19 43 43 H 1.08993 * 109.47298 * 179.97438 * 21 20 19 44 44 H 1.07995 * 119.97923 * 180.02562 * 22 19 15 45 45 H 1.09001 * 109.46441 * 299.99319 * 25 24 23 46 46 H 1.08997 * 109.47158 * 59.99721 * 25 24 23 47 47 H 1.09003 * 109.46926 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47145 * 60.00542 * 26 7 6 49 49 H 1.09000 * 109.46883 * 179.97438 * 26 7 6 50 50 H 1.09000 * 109.47744 * 180.02562 * 27 26 7 51 51 H 1.08999 * 109.47626 * 300.00565 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0094 -0.2149 1.0047 5 6 3.1565 -1.0690 -0.9676 6 6 4.6865 -1.0679 -0.9680 7 6 5.1953 0.3053 -1.4113 8 1 4.8315 0.5207 -2.4159 9 6 6.7253 0.3067 -1.4111 10 7 7.2145 -0.6330 -2.4231 11 6 8.5397 -0.7999 -2.6031 12 8 9.3295 -0.1701 -1.9258 13 6 9.0315 -1.7451 -3.6202 14 6 8.1261 -2.4748 -4.3965 15 6 8.5894 -3.3518 -5.3501 16 6 7.6119 -4.1325 -6.1902 17 8 7.5683 -3.5798 -7.5074 18 14 5.9178 -4.0379 -5.4209 19 6 9.9573 -3.5255 -5.5368 20 8 10.4058 -4.3971 -6.4754 21 6 11.8220 -4.5272 -6.6159 22 6 10.8644 -2.8111 -4.7679 23 6 10.4108 -1.9213 -3.8097 24 8 11.2963 -1.2222 -3.0565 25 6 12.6844 -1.4530 -3.3056 26 6 4.6847 1.3750 -0.4437 27 6 3.1548 1.3739 -0.4432 28 1 -1.0501 0.0004 0.0003 29 1 2.7936 -2.0472 -0.6521 30 1 2.7930 -0.8534 -1.9723 31 1 5.0502 -1.8302 -1.6570 32 1 5.0503 -1.2832 0.0366 33 1 7.0889 0.0047 -0.4289 34 1 7.0878 1.3087 -1.6405 35 1 6.5846 -1.1383 -2.9605 36 1 7.0637 -2.3466 -4.2510 37 1 7.9291 -5.1739 -6.2435 38 1 7.2931 -2.6533 -7.5363 39 1 4.9446 -4.8044 -6.2398 40 1 5.9565 -4.5804 -4.0391 41 1 12.2507 -3.5616 -6.8841 42 1 12.2510 -4.8659 -5.6728 43 1 12.0443 -5.2536 -7.3975 44 1 11.9250 -2.9493 -4.9171 45 1 12.9153 -2.5036 -3.1293 46 1 12.9150 -1.1989 -4.3401 47 1 13.2815 -0.8324 -2.6375 48 1 5.0486 1.1596 0.5609 49 1 5.0476 2.3532 -0.7592 50 1 2.7910 2.1362 0.2457 51 1 2.7909 1.5892 -1.4478 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_12297780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:23:43 Heat of formation + Delta-G solvation = -67.643589 kcal Electronic energy + Delta-G solvation = -32788.751699 eV Core-core repulsion = 28428.734119 eV Total energy + Delta-G solvation = -4360.017580 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.182 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.09001 -40.72007 -40.07012 -39.52627 -38.44434 -36.97139 -36.23336 -34.16506 -32.27052 -32.12866 -31.69786 -30.98165 -28.99182 -28.26602 -26.90449 -26.08996 -24.49612 -23.59685 -23.04112 -22.33259 -21.50071 -20.74168 -20.04077 -18.97332 -18.80055 -18.18373 -17.93418 -17.24573 -17.01979 -16.65169 -16.37400 -16.30929 -16.24929 -15.92477 -15.77980 -15.60032 -15.45425 -15.33130 -15.09921 -14.89466 -14.55321 -14.19638 -14.00498 -13.87160 -13.58311 -13.48040 -13.22221 -13.11590 -13.03242 -12.67183 -12.54224 -12.52108 -12.34142 -12.25567 -12.00487 -11.99725 -11.64836 -11.60191 -11.47209 -11.41841 -10.92423 -10.83869 -10.70957 -10.38039 -10.07765 -9.90891 -9.18166 -5.05447 -0.25237 0.08352 1.30597 1.64751 1.77799 1.92269 1.94449 2.00483 2.11657 2.15472 2.21503 2.63200 3.40502 3.45211 3.52863 3.64832 3.74410 3.79338 3.83372 3.86312 3.88467 4.11967 4.17399 4.22640 4.24066 4.25888 4.27064 4.28548 4.37031 4.44428 4.50611 4.54388 4.56048 4.62523 4.62951 4.65829 4.75603 4.76392 4.82704 4.89441 4.98811 5.02250 5.03986 5.19736 5.23397 5.28252 5.29294 5.30184 5.36272 5.43587 5.49712 5.62107 6.03146 6.29011 6.59501 6.74424 6.85102 7.30387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.206 4.206 3 C 0.016 3.984 4 H 0.090 0.910 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.091 4.091 8 H 0.097 0.903 9 C 0.128 3.872 10 N -0.716 5.716 11 C 0.562 3.438 12 O -0.567 6.567 13 C -0.225 4.225 14 C 0.010 3.990 15 C -0.204 4.204 16 C -0.061 4.061 17 O -0.554 6.554 18 Si 0.770 3.230 19 C 0.211 3.789 20 O -0.314 6.314 21 C 0.012 3.988 22 C -0.311 4.311 23 C 0.216 3.784 24 O -0.303 6.303 25 C 0.010 3.990 26 C -0.109 4.109 27 C -0.104 4.104 28 H 0.235 0.765 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.168 0.832 37 H 0.098 0.902 38 H 0.393 0.607 39 H -0.295 1.295 40 H -0.271 1.271 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.162 0.838 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.113 0.887 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 0.195 -2.082 2.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.206 4.206 3 C -0.002 4.002 4 H 0.108 0.892 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.109 4.109 8 H 0.115 0.885 9 C 0.004 3.996 10 N -0.370 5.370 11 C 0.351 3.649 12 O -0.447 6.447 13 C -0.229 4.229 14 C -0.008 4.008 15 C -0.205 4.205 16 C -0.170 4.170 17 O -0.361 6.361 18 Si 0.674 3.326 19 C 0.163 3.837 20 O -0.226 6.226 21 C -0.082 4.082 22 C -0.331 4.331 23 C 0.167 3.833 24 O -0.214 6.214 25 C -0.084 4.084 26 C -0.147 4.147 27 C -0.141 4.141 28 H 0.252 0.748 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.185 0.815 37 H 0.115 0.885 38 H 0.242 0.758 39 H -0.223 1.223 40 H -0.197 1.197 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.179 0.821 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.131 0.869 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.414 -0.362 -1.379 1.484 hybrid contribution 0.755 -0.729 -0.221 1.072 sum 0.340 -1.091 -1.599 1.966 Atomic orbital electron populations 1.25655 0.96976 1.00350 1.00691 1.23696 0.95320 1.00854 1.00756 1.18479 0.83370 0.97302 1.01067 0.89189 1.21519 0.95647 0.97692 0.99501 1.21649 0.94439 0.96687 1.02517 1.21390 0.91972 0.96004 1.01559 0.88452 1.21404 0.94274 0.92737 0.91165 1.45782 1.05975 1.44915 1.40279 1.18007 0.82779 0.81641 0.82506 1.90825 1.56349 1.48920 1.48587 1.19179 0.90973 1.07238 1.05551 1.20849 0.99117 0.90488 0.90385 1.19609 0.92105 1.05304 1.03504 1.25062 1.07214 0.97974 0.86770 1.86508 1.91633 1.32507 1.25497 0.94370 0.72882 0.88988 0.76387 1.18959 0.92583 0.86364 0.85760 1.86142 1.26885 1.57109 1.52458 1.23457 0.76931 1.03854 1.03928 1.21412 1.01797 1.05968 1.03900 1.18998 0.89227 0.87608 0.87473 1.86367 1.17751 1.60712 1.56581 1.23466 0.77898 1.03393 1.03633 1.21482 0.94402 0.99003 0.99829 1.21478 0.95572 0.94951 1.02112 0.74809 0.91799 0.90689 0.90224 0.91739 0.92440 0.91928 0.75090 0.81509 0.88480 0.75752 1.22292 1.19660 0.91217 0.91290 0.86369 0.82102 0.91187 0.91039 0.86861 0.91403 0.90624 0.91890 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.40 19.25 74.32 1.43 1.04 16 2 C -0.21 -0.55 12.56 31.12 0.39 -0.16 16 3 C 0.02 -0.03 2.57 -12.60 -0.03 -0.06 16 4 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.11 0.48 5.16 30.60 0.16 0.64 16 6 C -0.12 0.75 5.08 30.60 0.16 0.90 16 7 C -0.09 0.59 2.23 -10.79 -0.02 0.57 16 8 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 9 C 0.13 -0.22 5.06 86.38 0.44 0.22 16 10 N -0.72 0.97 5.24 -466.48 -2.44 -1.47 16 11 C 0.56 3.84 7.76 86.63 0.67 4.51 16 12 O -0.57 -9.03 15.15 16.86 0.26 -8.78 16 13 C -0.23 -0.96 5.89 -20.00 -0.12 -1.08 16 14 C 0.01 -0.02 8.14 22.50 0.18 0.17 16 15 C -0.20 -0.14 5.27 -19.80 -0.10 -0.24 16 16 C -0.06 0.00 2.37 71.23 0.17 0.17 16 17 O -0.55 -0.47 12.88 -148.98 -1.92 -2.39 16 18 Si 0.77 -3.27 29.90 68.60 2.05 -1.22 16 19 C 0.21 0.60 6.67 22.61 0.15 0.75 16 20 O -0.31 -0.93 9.80 -90.34 -0.89 -1.82 16 21 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 22 C -0.31 -0.59 8.01 22.43 0.18 -0.41 16 23 C 0.22 1.28 6.70 22.82 0.15 1.43 16 24 O -0.30 -2.51 8.56 -68.75 -0.59 -3.10 16 25 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 26 C -0.11 0.58 5.20 30.59 0.16 0.74 16 27 C -0.10 0.37 5.16 30.59 0.16 0.52 16 28 H 0.24 -0.99 7.80 -4.42 -0.03 -1.02 16 29 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.08 -0.70 7.18 -2.39 -0.02 -0.72 16 32 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.41 -3.35 5.66 -92.71 -0.53 -3.88 16 36 H 0.17 -1.56 3.42 -2.91 -0.01 -1.57 16 37 H 0.10 0.30 7.82 -2.39 -0.02 0.28 16 38 H 0.39 -3.13 8.70 -74.06 -0.64 -3.77 16 39 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16 40 H -0.27 0.21 7.11 99.48 0.71 0.92 16 41 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 42 H 0.07 -0.45 7.65 -2.38 -0.02 -0.47 16 43 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.16 -0.46 4.50 -2.91 -0.01 -0.48 16 45 H 0.07 -0.29 7.66 -2.39 -0.02 -0.31 16 46 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 47 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 50 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 51 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -26.08 409.94 2.64 -23.44 By element: Atomic # 1 Polarization: -16.37 SS G_CDS: -0.17 Total: -16.54 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.34 Total: 11.88 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -2.44 Total: -1.47 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -3.14 Total: -16.08 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.05 Total: -1.22 kcal Total: -26.08 2.64 -23.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_12297780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.205 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds