Wall clock time and date at job start Sun Mar 7 2021 08:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47439 * 36.77276 * 3 2 1 5 5 C 1.53002 * 109.46792 * 156.77187 * 3 2 1 6 6 C 1.52997 * 109.46978 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47164 * 299.99874 * 6 5 3 8 8 H 1.08998 * 109.46505 * 299.99708 * 7 6 5 9 9 C 1.52992 * 109.47223 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.47658 * 64.99659 * 9 7 6 11 11 C 1.34782 * 120.00273 * 180.02562 * 10 9 7 12 12 O 1.21563 * 120.00013 * 359.97438 * 11 10 9 13 13 C 1.47726 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.39620 * 120.11436 * 179.72428 * 13 11 10 15 15 C 1.37867 * 119.87670 * 179.74235 * 14 13 11 16 16 C 1.50700 * 119.94070 * 180.29282 * 15 14 13 17 17 O 1.42898 * 109.46867 * 15.24058 * 16 15 14 18 18 Si 1.86302 * 109.46970 * 135.23623 * 16 15 14 19 19 C 1.38626 * 120.11660 * 0.53194 * 15 14 13 20 20 F 1.35108 * 119.88163 * 179.71923 * 19 15 14 21 21 C 1.38672 * 120.24067 * 359.74261 * 19 15 14 22 22 C 1.37810 * 120.12135 * 359.97401 * 21 19 15 23 23 C 1.52997 * 109.47127 * 59.99836 * 7 6 5 24 24 C 1.52996 * 109.47001 * 276.76628 * 3 2 1 25 25 H 4.18734 * 15.03993 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.47097 * 299.99720 * 5 3 2 27 27 H 1.09001 * 109.47142 * 59.99685 * 5 3 2 28 28 H 1.09001 * 109.47375 * 59.99908 * 6 5 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.47563 * 185.00049 * 9 7 6 31 31 H 1.09004 * 109.47313 * 304.99704 * 9 7 6 32 32 H 0.97002 * 119.99938 * 0.02562 * 10 9 7 33 33 H 1.07999 * 120.06538 * 0.02562 * 14 13 11 34 34 H 1.08994 * 109.47451 * 255.23540 * 16 15 14 35 35 H 0.96693 * 114.00666 * 60.00213 * 17 16 15 36 36 H 1.48496 * 110.00038 * 58.68279 * 18 16 15 37 37 H 1.48497 * 110.00110 * 180.02562 * 18 16 15 38 38 H 1.08006 * 119.94288 * 180.02562 * 21 19 15 39 39 H 1.07997 * 120.06254 * 180.02562 * 22 21 19 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 7 6 41 41 H 1.09001 * 109.46832 * 60.00321 * 23 7 6 42 42 H 1.09004 * 109.47368 * 60.00428 * 24 3 2 43 43 H 1.09001 * 109.47372 * 300.00584 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.8223 -0.6151 5 6 3.1554 1.3265 -0.5689 6 6 4.6854 1.3275 -0.5684 7 6 5.1950 1.1580 0.8644 8 1 4.8309 1.9811 1.4792 9 6 6.7249 1.1596 0.8650 10 7 7.2121 2.4719 0.4331 11 6 8.5371 2.7070 0.3561 12 8 9.3278 1.8302 0.6456 13 6 9.0283 4.0306 -0.0789 14 6 10.4002 4.2786 -0.1539 15 6 10.8533 5.5139 -0.5656 16 6 12.3338 5.7810 -0.6535 17 8 13.0446 4.5420 -0.6130 18 14 12.7121 6.6619 -2.2510 19 6 9.9494 6.5122 -0.8941 20 9 10.3986 7.7229 -1.2916 21 6 8.5857 6.2730 -0.8159 22 6 8.1219 5.0400 -0.4111 23 6 4.6856 -0.1678 1.4333 24 6 3.1561 -0.1691 1.4324 25 1 -1.0499 -0.0005 -0.0010 26 1 2.7920 1.4475 -1.5894 27 1 2.7916 2.1495 0.0462 28 1 5.0495 0.5044 -1.1833 29 1 5.0482 2.2718 -0.9741 30 1 7.0881 0.9503 1.8712 31 1 7.0894 0.3935 0.1806 32 1 6.5812 3.1717 0.2025 33 1 11.1053 3.5028 0.1056 34 1 12.6412 6.4039 0.1864 35 1 12.8208 3.9364 -1.3327 36 1 11.9542 7.9370 -2.3196 37 1 14.1692 6.9306 -2.3501 38 1 7.8857 7.0542 -1.0733 39 1 7.0597 4.8547 -0.3509 40 1 5.0482 -0.2884 2.4541 41 1 5.0497 -0.9908 0.8184 42 1 2.7932 -1.1136 1.8378 43 1 2.7923 0.6540 2.0476 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_12496548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:24:30 Heat of formation + Delta-G solvation = -34.322695 kcal Electronic energy + Delta-G solvation = -25756.635784 eV Core-core repulsion = 21877.048754 eV Total energy + Delta-G solvation = -3879.587031 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.40966 -41.44337 -40.17884 -39.45502 -37.69865 -36.37930 -34.30019 -32.83312 -32.09687 -31.74844 -31.14643 -27.52241 -26.80123 -24.70142 -23.64994 -23.22723 -22.70407 -21.49915 -20.77130 -19.32961 -19.00621 -18.77669 -18.04447 -17.71794 -17.13730 -16.83304 -16.54787 -16.16204 -15.88780 -15.79723 -15.53826 -15.20160 -15.15938 -15.10893 -14.84161 -14.66327 -14.01898 -13.94895 -13.74622 -13.59698 -13.36048 -13.17582 -13.08920 -12.76381 -12.40407 -12.33953 -12.04970 -11.67935 -11.52926 -11.47571 -11.42802 -11.13748 -10.92457 -10.88550 -10.75301 -10.23014 -10.01474 -9.69299 -5.03998 -0.49175 0.04010 1.21480 1.60562 1.63811 1.88924 1.91329 1.94884 2.07504 2.61191 3.00758 3.26227 3.34975 3.37143 3.62352 3.70237 3.74394 3.80115 3.81999 4.01378 4.10384 4.17365 4.31753 4.35449 4.40481 4.49309 4.49969 4.57577 4.59371 4.71490 4.77936 4.81085 4.89521 4.91635 4.98471 5.03661 5.11370 5.15309 5.18149 5.23793 5.24951 5.31501 5.35918 5.41629 5.56042 5.62396 6.46132 6.61637 6.71370 7.13697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.208 4.208 3 C 0.016 3.984 4 H 0.093 0.907 5 C -0.105 4.105 6 C -0.112 4.112 7 C -0.090 4.090 8 H 0.089 0.911 9 C 0.125 3.875 10 N -0.708 5.708 11 C 0.558 3.442 12 O -0.577 6.577 13 C -0.150 4.150 14 C -0.029 4.029 15 C -0.157 4.157 16 C -0.071 4.071 17 O -0.551 6.551 18 Si 0.763 3.237 19 C 0.104 3.896 20 F -0.131 7.131 21 C -0.145 4.145 22 C -0.045 4.045 23 C -0.110 4.110 24 C -0.105 4.105 25 H 0.236 0.764 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.397 0.603 36 H -0.255 1.255 37 H -0.305 1.305 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 0.602 -2.724 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.208 4.208 3 C -0.002 4.002 4 H 0.111 0.889 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.109 4.109 8 H 0.107 0.893 9 C 0.001 3.999 10 N -0.361 5.361 11 C 0.346 3.654 12 O -0.458 6.458 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.158 4.158 16 C -0.181 4.181 17 O -0.359 6.359 18 Si 0.667 3.333 19 C 0.085 3.915 20 F -0.110 7.110 21 C -0.164 4.164 22 C -0.063 4.063 23 C -0.148 4.148 24 C -0.142 4.142 25 H 0.252 0.748 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.247 0.753 36 H -0.181 1.181 37 H -0.233 1.233 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.314 0.988 -2.370 5.902 hybrid contribution -0.341 0.415 0.656 0.848 sum -5.655 1.404 -1.714 6.073 Atomic orbital electron populations 1.25672 0.97001 1.00541 1.00400 1.23718 0.95364 1.00830 1.00874 1.18482 0.83351 0.99990 0.98371 0.88890 1.21504 0.95871 0.95662 1.01226 1.21621 0.94202 1.03303 0.95780 1.21363 0.92065 0.99543 0.97888 0.89262 1.21446 0.94269 0.84083 1.00070 1.45803 1.06109 1.16272 1.67929 1.18351 0.82815 0.87188 0.77061 1.90805 1.56494 1.47426 1.51076 1.19978 0.94432 0.94481 1.06396 1.20899 0.95023 0.95726 0.93172 1.20265 0.96606 0.94459 1.04506 1.25079 0.88206 0.92705 1.12089 1.86474 1.65704 1.28074 1.55665 0.94338 0.77140 0.81264 0.80554 1.18015 0.93586 0.80489 0.99454 1.91558 1.89029 1.42700 1.87695 1.21391 0.93070 0.99687 1.02223 1.21485 1.00977 0.90470 0.93386 1.21483 0.94362 0.96982 1.01973 1.21474 0.95672 1.02391 0.94689 0.74789 0.91569 0.91346 0.91374 0.90028 0.92089 0.91753 0.74658 0.83959 0.86893 0.75274 1.18096 1.23299 0.81190 0.80959 0.90821 0.91022 0.91838 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.27 19.25 74.32 1.43 1.16 16 2 C -0.21 -0.42 12.56 31.12 0.39 -0.02 16 3 C 0.02 -0.04 2.57 -12.60 -0.03 -0.08 16 4 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 5 C -0.11 0.61 5.16 30.59 0.16 0.76 16 6 C -0.11 0.95 5.08 30.60 0.16 1.11 16 7 C -0.09 0.71 2.22 -10.79 -0.02 0.69 16 8 H 0.09 -0.82 8.14 -2.39 -0.02 -0.83 16 9 C 0.12 -0.50 5.07 86.38 0.44 -0.06 16 10 N -0.71 3.39 5.23 -466.09 -2.44 0.95 16 11 C 0.56 1.27 7.77 86.75 0.67 1.95 16 12 O -0.58 -6.66 16.34 -3.91 -0.06 -6.73 16 13 C -0.15 0.15 5.87 -20.09 -0.12 0.03 16 14 C -0.03 -0.04 8.78 22.52 0.20 0.16 16 15 C -0.16 -0.07 5.13 -19.86 -0.10 -0.17 16 16 C -0.07 -0.08 2.96 71.24 0.21 0.13 16 17 O -0.55 -1.00 11.64 -148.98 -1.73 -2.74 16 18 Si 0.76 0.01 30.81 68.60 2.11 2.12 16 19 C 0.10 -0.06 6.67 22.47 0.15 0.09 16 20 F -0.13 -0.35 12.82 44.97 0.58 0.23 16 21 C -0.15 0.82 10.01 22.27 0.22 1.05 16 22 C -0.04 0.32 9.54 22.52 0.21 0.54 16 23 C -0.11 0.69 5.20 30.58 0.16 0.85 16 24 C -0.10 0.43 5.15 30.58 0.16 0.58 16 25 H 0.24 -1.12 7.80 -4.42 -0.03 -1.15 16 26 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.08 -0.93 7.18 -2.39 -0.02 -0.94 16 30 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.41 -4.72 5.68 -92.71 -0.53 -5.24 16 33 H 0.14 0.55 6.67 -2.91 -0.02 0.53 16 34 H 0.11 0.28 7.96 -2.39 -0.02 0.26 16 35 H 0.40 -2.41 8.44 -74.06 -0.62 -3.04 16 36 H -0.26 -1.08 5.27 99.48 0.52 -0.56 16 37 H -0.30 -2.31 7.11 99.48 0.71 -1.60 16 38 H 0.17 -1.78 8.06 -2.91 -0.02 -1.80 16 39 H 0.17 -2.58 6.40 -2.91 -0.02 -2.60 16 40 H 0.07 -0.46 8.14 -2.39 -0.02 -0.47 16 41 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -20.01 355.97 2.47 -17.54 By element: Atomic # 1 Polarization: -19.86 SS G_CDS: -0.27 Total: -20.13 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.28 Total: 8.76 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -2.44 Total: 0.95 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.80 Total: -9.46 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.58 Total: 0.23 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.11 Total: 2.12 kcal Total: -20.01 2.47 -17.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_12496548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.782 kcal (2) G-P(sol) polarization free energy of solvation -20.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds