Wall clock time and date at job start Sun Mar 7 2021 08:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47338 * 249.10292 * 3 2 1 5 5 C 1.52992 * 109.47649 * 9.10882 * 3 2 1 6 6 C 1.52996 * 109.47311 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47334 * 299.99983 * 6 5 3 8 8 H 1.09004 * 109.47063 * 299.99923 * 7 6 5 9 9 C 1.53006 * 109.47280 * 180.02562 * 7 6 5 10 10 N 1.46494 * 109.47105 * 175.00054 * 9 7 6 11 11 C 1.34775 * 120.00262 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99497 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00608 * 179.97438 * 11 10 9 14 14 N 1.46495 * 109.47495 * 179.97438 * 13 11 10 15 15 C 1.35039 * 125.93651 * 124.99965 * 14 13 11 16 16 C 1.35079 * 107.98567 * 179.97438 * 15 14 13 17 17 C 1.50693 * 126.07764 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.47156 * 105.14408 * 17 16 15 19 19 Si 1.86303 * 109.47091 * 345.14265 * 17 16 15 20 20 C 1.40851 * 107.84565 * 0.02562 * 16 15 14 21 21 C 1.48422 * 126.03342 * 180.02562 * 20 16 15 22 22 C 1.39325 * 120.11887 * 317.18615 * 21 20 16 23 23 C 1.38028 * 119.87561 * 179.68196 * 22 21 20 24 24 C 1.38321 * 120.11772 * 0.61962 * 23 22 21 25 25 C 1.38316 * 120.24273 * 359.67784 * 24 23 22 26 26 C 1.38024 * 120.12054 * 0.02562 * 25 24 23 27 27 N 1.31622 * 107.92581 * 359.75889 * 20 16 15 28 28 C 1.52999 * 109.47360 * 59.99727 * 7 6 5 29 29 C 1.52996 * 109.47119 * 300.00405 * 28 7 6 30 30 H 4.18739 * 15.03850 * 0.02562 * 4 2 1 31 31 H 1.09001 * 109.47349 * 300.00181 * 5 3 2 32 32 H 1.09004 * 109.47135 * 59.99609 * 5 3 2 33 33 H 1.08999 * 109.46938 * 60.00452 * 6 5 3 34 34 H 1.09007 * 109.47090 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.46713 * 294.99842 * 9 7 6 36 36 H 1.08998 * 109.47352 * 54.99846 * 9 7 6 37 37 H 0.96998 * 120.00412 * 359.97438 * 10 9 7 38 38 H 1.09000 * 109.46904 * 300.00208 * 13 11 10 39 39 H 1.09007 * 109.47095 * 59.99910 * 13 11 10 40 40 H 1.08010 * 126.00245 * 359.97438 * 15 14 13 41 41 H 1.09003 * 109.47716 * 225.14296 * 17 16 15 42 42 H 0.96702 * 113.99784 * 300.00321 * 18 17 16 43 43 H 1.48503 * 109.99701 * 179.97438 * 19 17 16 44 44 H 1.48490 * 109.99959 * 301.31501 * 19 17 16 45 45 H 1.07993 * 120.06211 * 359.97438 * 22 21 20 46 46 H 1.07996 * 119.93819 * 180.31761 * 23 22 21 47 47 H 1.07999 * 119.87730 * 179.70329 * 24 23 22 48 48 H 1.08001 * 119.93921 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.06170 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.46873 * 60.00080 * 28 7 6 51 51 H 1.08995 * 109.47452 * 179.97438 * 28 7 6 52 52 H 1.09004 * 109.46983 * 299.99608 * 29 28 7 53 53 H 1.08998 * 109.47373 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3674 0.9600 5 6 3.1567 -1.4233 -0.2283 6 6 4.6867 -1.4224 -0.2290 7 6 5.1957 -0.5124 -1.3486 8 1 4.8322 -0.8793 -2.3085 9 6 6.7258 -0.5121 -1.3496 10 7 7.2132 0.2626 -2.4935 11 6 8.5380 0.4015 -2.6980 12 8 9.3268 -0.1146 -1.9347 13 6 9.0395 1.1978 -3.8750 14 7 10.5044 1.1993 -3.8752 15 6 11.2972 0.8094 -4.8966 16 6 12.5821 0.9600 -4.5081 17 6 13.8019 0.6447 -5.3349 18 8 14.3926 1.8616 -5.7958 19 14 13.3082 -0.3988 -6.7972 20 6 12.5792 1.4630 -3.1925 21 6 13.7777 1.7779 -2.3755 22 6 14.8653 0.9072 -2.3653 23 6 15.9799 1.2082 -1.6089 24 6 16.0132 2.3654 -0.8519 25 6 14.9337 3.2302 -0.8535 26 6 13.8165 2.9421 -1.6111 27 7 11.3261 1.6100 -2.8177 28 6 4.6850 0.9116 -1.1203 29 6 3.1551 0.9108 -1.1197 30 1 -1.0500 -0.0006 -0.0001 31 1 2.7937 -2.0718 0.5690 32 1 2.7935 -1.7900 -1.1885 33 1 5.0502 -1.0557 0.7310 34 1 5.0505 -2.4371 -0.3912 35 1 7.0896 -0.0632 -0.4253 36 1 7.0894 -1.5370 -1.4234 37 1 6.5824 0.6756 -3.1037 38 1 8.6760 0.7483 -4.7991 39 1 8.6755 2.2227 -3.8018 40 1 10.9625 0.4419 -5.8555 41 1 14.5226 0.0989 -4.7259 42 1 13.8065 2.3997 -6.3455 43 1 14.5023 -0.7161 -7.6210 44 1 12.6639 -1.6531 -6.3316 45 1 14.8382 0.0008 -2.9518 46 1 16.8256 0.5366 -1.6042 47 1 16.8854 2.5948 -0.2577 48 1 14.9651 4.1326 -0.2610 49 1 12.9743 3.6182 -1.6120 50 1 5.0485 1.2785 -0.1604 51 1 5.0480 1.5600 -1.9177 52 1 2.7916 0.5439 -2.0796 53 1 2.7912 1.9252 -0.9566 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_12622748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:24:33 Heat of formation + Delta-G solvation = 83.594930 kcal Electronic energy + Delta-G solvation = -33558.430696 eV Core-core repulsion = 29171.267832 eV Total energy + Delta-G solvation = -4387.162864 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.47762 -40.91408 -39.92535 -39.67903 -37.66363 -36.37774 -34.80544 -34.20646 -32.38049 -32.07842 -31.79930 -31.55520 -31.25596 -28.91108 -26.85517 -25.87294 -24.18449 -23.70145 -23.47741 -22.79159 -21.82665 -21.50888 -21.05516 -20.74928 -19.03669 -18.77035 -18.36603 -17.69722 -17.38745 -16.86227 -16.63018 -16.43404 -16.15267 -16.13627 -15.67813 -15.61077 -15.43086 -15.40377 -15.19787 -15.04186 -14.80174 -14.37218 -14.31126 -14.19327 -13.99384 -13.96227 -13.69856 -13.59878 -13.32946 -13.16942 -13.08252 -12.48493 -12.44209 -12.40451 -12.15479 -12.10205 -11.86969 -11.74077 -11.69667 -11.57527 -11.51533 -11.25239 -10.94967 -10.79742 -10.61988 -10.22011 -10.16494 -9.91365 -9.76924 -9.31231 -5.01722 0.09238 0.42754 0.82610 1.31368 1.41808 1.50392 1.63793 1.76298 1.86406 1.88656 2.03691 2.13198 2.85790 3.33514 3.35593 3.60658 3.65079 3.69248 3.74477 3.77182 3.77506 3.94668 3.97707 4.03853 4.12569 4.16551 4.18878 4.22505 4.27222 4.36533 4.43686 4.44559 4.45574 4.50876 4.52927 4.53614 4.64942 4.72519 4.77441 4.83297 4.84851 4.93643 4.95948 5.06830 5.10303 5.13872 5.19160 5.20692 5.27688 5.27995 5.32858 5.37720 5.51657 5.52718 5.53792 5.58852 5.94107 6.00235 6.47496 6.60307 6.68702 6.91261 7.17967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.209 4.209 3 C 0.016 3.984 4 H 0.089 0.911 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.086 4.086 8 H 0.095 0.905 9 C 0.129 3.871 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.571 6.571 13 C 0.110 3.890 14 N -0.359 5.359 15 C 0.080 3.920 16 C -0.270 4.270 17 C -0.044 4.044 18 O -0.558 6.558 19 Si 0.802 3.198 20 C 0.106 3.894 21 C -0.025 4.025 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.110 4.110 27 N -0.293 5.293 28 C -0.111 4.111 29 C -0.104 4.104 30 H 0.237 0.763 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.421 0.579 38 H 0.183 0.817 39 H 0.144 0.856 40 H 0.230 0.770 41 H 0.092 0.908 42 H 0.391 0.609 43 H -0.300 1.300 44 H -0.286 1.286 45 H 0.122 0.878 46 H 0.144 0.856 47 H 0.148 0.852 48 H 0.144 0.856 49 H 0.119 0.881 50 H 0.061 0.939 51 H 0.084 0.916 52 H 0.071 0.929 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 1.765 -6.793 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.209 4.209 3 C -0.002 4.002 4 H 0.107 0.893 5 C -0.141 4.141 6 C -0.150 4.150 7 C -0.105 4.105 8 H 0.113 0.887 9 C 0.005 3.995 10 N -0.364 5.364 11 C 0.277 3.723 12 O -0.449 6.449 13 C -0.014 4.014 14 N -0.141 5.141 15 C -0.065 4.065 16 C -0.282 4.282 17 C -0.153 4.153 18 O -0.365 6.365 19 Si 0.707 3.293 20 C -0.060 4.060 21 C -0.027 4.027 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.129 4.129 27 N -0.115 5.115 28 C -0.148 4.148 29 C -0.142 4.142 30 H 0.253 0.747 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.259 0.741 38 H 0.200 0.800 39 H 0.162 0.838 40 H 0.246 0.754 41 H 0.109 0.891 42 H 0.241 0.759 43 H -0.228 1.228 44 H -0.213 1.213 45 H 0.140 0.860 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.162 0.838 49 H 0.137 0.863 50 H 0.079 0.921 51 H 0.102 0.898 52 H 0.090 0.910 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.044 0.782 -5.395 8.907 hybrid contribution 0.197 -0.195 0.409 0.494 sum -6.847 0.587 -4.986 8.490 Atomic orbital electron populations 1.25680 0.96985 1.00185 1.00490 1.23674 0.95310 1.01017 1.00923 1.18470 0.83487 0.97481 1.00801 0.89257 1.21472 0.95423 0.94656 1.02558 1.21499 0.94582 1.00101 0.98776 1.21342 0.91836 0.96552 1.00790 0.88700 1.21315 0.94333 0.95388 0.88477 1.45766 1.06118 1.54378 1.30134 1.21171 0.82952 0.80989 0.87146 1.90833 1.56587 1.49256 1.48251 1.22037 0.74304 1.04656 1.00380 1.48159 1.06284 1.49501 1.10147 1.22896 0.89375 0.98828 0.95448 1.20649 0.95989 1.15396 0.96165 1.24740 0.93119 0.93457 1.04017 1.86480 1.43627 1.34351 1.72038 0.94095 0.81621 0.77367 0.76214 1.20830 0.91342 0.99667 0.94135 1.17983 0.91593 0.95889 0.97188 1.21243 0.93195 0.99012 0.99485 1.21378 0.98129 0.98096 0.96696 1.21566 0.99202 0.94124 0.98818 1.21387 0.93157 1.00619 0.99078 1.21282 0.98786 0.96421 0.96427 1.77700 1.00965 1.22464 1.10362 1.21605 0.94314 0.95942 1.02962 1.21500 0.95730 0.99041 0.97904 0.74677 0.91913 0.91254 0.91611 0.90899 0.93130 0.92617 0.74082 0.79970 0.83796 0.75440 0.89092 0.75924 1.22809 1.21294 0.85987 0.83784 0.83471 0.83787 0.86290 0.92062 0.89775 0.90991 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.31 19.25 74.32 1.43 1.12 16 2 C -0.21 -0.51 12.56 31.13 0.39 -0.12 16 3 C 0.02 -0.03 2.57 -12.60 -0.03 -0.06 16 4 H 0.09 -0.16 8.14 -2.39 -0.02 -0.17 16 5 C -0.10 0.35 5.16 30.59 0.16 0.51 16 6 C -0.11 0.56 5.20 30.59 0.16 0.72 16 7 C -0.09 0.64 2.22 -10.79 -0.02 0.62 16 8 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 9 C 0.13 -0.38 5.07 86.38 0.44 0.06 16 10 N -0.71 4.48 5.28 -463.07 -2.45 2.04 16 11 C 0.49 0.31 7.86 87.66 0.69 1.00 16 12 O -0.57 -8.12 15.71 -3.05 -0.05 -8.16 16 13 C 0.11 -0.82 6.98 85.63 0.60 -0.23 16 14 N -0.36 -0.84 3.40 -351.92 -1.20 -2.03 16 15 C 0.08 -0.13 9.96 83.47 0.83 0.70 16 16 C -0.27 -1.28 5.35 -19.95 -0.11 -1.38 16 17 C -0.04 -0.12 2.51 71.23 0.18 0.06 16 18 O -0.56 -1.96 12.88 -148.98 -1.92 -3.88 16 19 Si 0.80 -2.25 30.74 68.60 2.11 -0.14 16 20 C 0.11 1.23 6.67 42.53 0.28 1.51 16 21 C -0.02 -0.30 5.74 -20.04 -0.12 -0.42 16 22 C -0.11 -1.12 8.89 22.48 0.20 -0.92 16 23 C -0.13 -0.84 10.03 22.24 0.22 -0.62 16 24 C -0.12 -0.64 10.04 22.31 0.22 -0.42 16 25 C -0.12 -0.85 10.03 22.24 0.22 -0.62 16 26 C -0.11 -1.18 9.78 22.48 0.22 -0.96 16 27 N -0.29 -3.60 11.69 -48.15 -0.56 -4.17 16 28 C -0.11 0.85 5.08 30.59 0.16 1.01 16 29 C -0.10 0.54 5.16 30.60 0.16 0.70 16 30 H 0.24 -1.11 7.80 -4.42 -0.03 -1.14 16 31 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 35 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.42 -6.04 7.66 -92.71 -0.71 -6.75 16 38 H 0.18 -3.40 8.07 -2.39 -0.02 -3.42 16 39 H 0.14 -1.79 8.14 -2.38 -0.02 -1.81 16 40 H 0.23 -2.99 6.40 -2.91 -0.02 -3.01 16 41 H 0.09 0.55 5.55 -2.39 -0.01 0.54 16 42 H 0.39 -2.15 8.70 -74.06 -0.64 -2.79 16 43 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 44 H -0.29 -0.62 7.11 99.48 0.71 0.08 16 45 H 0.12 1.04 6.21 -2.91 -0.02 1.02 16 46 H 0.14 0.27 8.06 -2.91 -0.02 0.24 16 47 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 48 H 0.14 0.27 8.06 -2.91 -0.02 0.24 16 49 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 50 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 51 H 0.08 -0.92 7.18 -2.39 -0.02 -0.94 16 52 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 53 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 Total: 0.00 -36.43 437.52 1.83 -34.60 By element: Atomic # 1 Polarization: -20.11 SS G_CDS: -0.39 Total: -20.50 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.28 Total: 2.25 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -4.20 Total: -4.16 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.97 Total: -12.04 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.11 Total: -0.14 kcal Total: -36.43 1.83 -34.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_12622748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.192 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds