Wall clock time and date at job start Sun Mar 7 2021 08:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47535 * 297.02123 * 3 2 1 5 5 C 1.53007 * 109.47211 * 57.02459 * 3 2 1 6 6 C 1.53003 * 109.46963 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47020 * 299.99597 * 6 5 3 8 8 H 1.09008 * 109.46939 * 300.00621 * 7 6 5 9 9 C 1.52996 * 109.47238 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47059 * 64.99625 * 9 7 6 11 11 C 1.34777 * 119.99828 * 179.72339 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 O 1.42900 * 109.47361 * 180.02562 * 13 11 10 15 15 C 1.35902 * 116.99916 * 179.97438 * 14 13 11 16 16 C 1.38735 * 120.05203 * 359.73142 * 15 14 13 17 17 C 1.38146 * 119.93650 * 179.73922 * 16 15 14 18 18 C 1.38262 * 120.05965 * 0.50854 * 17 16 15 19 19 C 1.50701 * 119.94551 * 179.74268 * 18 17 16 20 20 O 1.42896 * 109.47110 * 245.02215 * 19 18 17 21 21 Si 1.86296 * 109.47325 * 5.02150 * 19 18 17 22 22 C 1.38264 * 120.10942 * 359.76560 * 18 17 16 23 23 C 1.38141 * 120.05764 * 359.97438 * 22 18 17 24 24 C 1.53003 * 109.47108 * 59.99877 * 7 6 5 25 25 C 1.52996 * 109.47530 * 300.00383 * 24 7 6 26 26 H 4.18741 * 15.04041 * 359.97438 * 4 2 1 27 27 H 1.08997 * 109.46534 * 299.99635 * 5 3 2 28 28 H 1.08994 * 109.47145 * 59.99425 * 5 3 2 29 29 H 1.09001 * 109.46736 * 179.97438 * 6 5 3 30 30 H 1.08995 * 109.47226 * 59.99434 * 6 5 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 9 7 6 32 32 H 1.08994 * 109.46974 * 185.00040 * 9 7 6 33 33 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 34 34 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 35 35 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 36 36 H 1.07996 * 120.03150 * 359.97438 * 16 15 14 37 37 H 1.08008 * 119.97071 * 180.27481 * 17 16 15 38 38 H 1.08998 * 109.46978 * 125.02544 * 19 18 17 39 39 H 0.96702 * 114.00471 * 180.02562 * 20 19 18 40 40 H 1.48499 * 110.00000 * 300.00227 * 21 19 18 41 41 H 1.48496 * 109.99787 * 61.31837 * 21 19 18 42 42 H 1.08009 * 119.97194 * 179.97438 * 22 18 17 43 43 H 1.08002 * 120.02694 * 179.97438 * 23 22 18 44 44 H 1.09000 * 109.46800 * 60.00835 * 24 7 6 45 45 H 1.09002 * 109.46892 * 179.97438 * 24 7 6 46 46 H 1.09001 * 109.46987 * 179.97438 * 25 24 7 47 47 H 1.09003 * 109.46613 * 299.99696 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.4660 0.9154 5 6 3.1564 -0.7843 -1.2102 6 6 4.6864 -0.7841 -1.2098 7 6 5.1962 0.6565 -1.2844 8 1 4.8329 1.1236 -2.1999 9 6 6.7262 0.6568 -1.2846 10 7 7.2144 0.0091 -2.5046 11 6 8.5394 -0.1012 -2.7250 12 8 9.3277 0.3311 -1.9109 13 6 9.0417 -0.7619 -3.9829 14 8 10.4707 -0.7576 -3.9853 15 6 11.0876 -1.3205 -5.0574 16 6 10.3330 -1.8708 -6.0833 17 6 10.9625 -2.4376 -7.1746 18 6 12.3433 -2.4662 -7.2400 19 6 13.0273 -3.0903 -8.4289 20 8 13.7551 -4.2457 -8.0075 21 14 11.7497 -3.5873 -9.6903 22 6 13.0975 -1.9235 -6.2161 23 6 12.4729 -1.3507 -5.1252 24 6 4.6858 1.4415 -0.0743 25 6 3.1558 1.4413 -0.0746 26 1 -1.0500 0.0002 0.0007 27 1 2.7935 -1.8107 -1.1567 28 1 2.7928 -0.3176 -2.1256 29 1 5.0500 -1.3437 -2.0716 30 1 5.0495 -1.2510 -0.2943 31 1 7.0897 0.1116 -0.4135 32 1 7.0893 1.6838 -1.2481 33 1 6.5840 -0.3364 -3.1559 34 1 8.6817 -1.7899 -4.0220 35 1 8.6749 -0.2153 -4.8517 36 1 9.2545 -1.8526 -6.0307 37 1 10.3755 -2.8622 -7.9757 38 1 13.7146 -2.3698 -8.8722 39 1 14.2220 -4.6990 -8.7227 40 1 10.8065 -4.5695 -9.0981 41 1 11.0074 -2.3900 -10.1602 42 1 14.1760 -1.9474 -6.2693 43 1 13.0626 -0.9273 -4.3255 44 1 5.0491 0.9746 0.8411 45 1 5.0494 2.4677 -0.1273 46 1 2.7922 2.0002 0.7877 47 1 2.7927 1.9083 -0.9902 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_2989410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:26:08 Heat of formation + Delta-G solvation = -33.157476 kcal Electronic energy + Delta-G solvation = -26637.225073 eV Core-core repulsion = 22752.922734 eV Total energy + Delta-G solvation = -3884.302339 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.166 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66669 -40.83094 -39.88358 -38.95146 -37.20742 -36.40014 -34.29905 -32.62123 -31.97752 -31.82142 -31.63937 -29.72328 -26.84360 -26.07128 -24.19897 -23.72650 -22.89419 -22.28512 -21.69895 -20.83361 -19.61285 -19.04679 -18.52368 -18.30652 -17.57476 -17.40593 -16.82867 -16.66777 -16.41343 -16.00023 -15.77582 -15.52837 -15.48145 -15.19748 -15.10597 -14.83182 -14.51589 -14.17236 -14.00884 -13.93854 -13.68754 -13.60419 -13.45855 -13.23180 -13.14602 -12.51863 -12.45640 -12.22998 -12.10953 -12.03775 -11.88481 -11.71385 -11.58846 -11.52866 -11.09071 -10.94626 -10.80363 -10.27695 -10.24796 -10.18359 -9.34630 -4.91929 0.11435 0.16749 1.32691 1.37758 1.40799 1.66098 1.85196 1.87520 1.97207 2.49359 2.52672 3.32342 3.38379 3.50386 3.61365 3.67795 3.73542 3.74987 3.75967 3.90655 3.97183 3.98213 4.11658 4.13806 4.26000 4.30608 4.35411 4.40814 4.43437 4.43764 4.52017 4.58766 4.64411 4.71217 4.80902 4.83218 4.92196 5.03105 5.08636 5.09465 5.11774 5.17908 5.19479 5.25466 5.28727 5.35286 5.36449 5.49918 5.55721 6.13997 6.38469 6.67587 6.93241 7.05378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.105 4.105 6 C -0.112 4.112 7 C -0.088 4.088 8 H 0.091 0.909 9 C 0.126 3.874 10 N -0.707 5.707 11 C 0.513 3.487 12 O -0.573 6.573 13 C 0.034 3.966 14 O -0.315 6.315 15 C 0.122 3.878 16 C -0.202 4.202 17 C -0.098 4.098 18 C -0.130 4.130 19 C -0.077 4.077 20 O -0.566 6.566 21 Si 0.773 3.227 22 C -0.056 4.056 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.104 4.104 26 H 0.237 0.763 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.403 0.597 40 H -0.294 1.294 41 H -0.287 1.287 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -1.808 -6.273 7.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.209 4.209 3 C -0.002 4.002 4 H 0.110 0.890 5 C -0.143 4.143 6 C -0.150 4.150 7 C -0.107 4.107 8 H 0.109 0.891 9 C 0.002 3.998 10 N -0.362 5.362 11 C 0.299 3.701 12 O -0.451 6.451 13 C -0.043 4.043 14 O -0.228 6.228 15 C 0.076 3.924 16 C -0.220 4.220 17 C -0.116 4.116 18 C -0.130 4.130 19 C -0.187 4.187 20 O -0.376 6.376 21 Si 0.679 3.321 22 C -0.074 4.074 23 C -0.179 4.179 24 C -0.148 4.148 25 C -0.142 4.142 26 H 0.253 0.747 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.258 0.742 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.178 0.822 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.254 0.746 40 H -0.222 1.222 41 H -0.214 1.214 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.572 -1.252 -5.145 6.387 hybrid contribution -0.644 0.222 0.465 0.825 sum -4.216 -1.029 -4.680 6.383 Atomic orbital electron populations 1.25685 0.96996 1.00241 1.00490 1.23690 0.95336 1.00984 1.00906 1.18472 0.83446 0.97783 1.00495 0.88971 1.21501 0.95772 0.99971 0.97012 1.21621 0.94315 0.95751 1.03264 1.21359 0.91836 0.97063 1.00459 0.89063 1.21439 0.94365 0.97544 0.86406 1.45700 1.05640 1.60530 1.24306 1.20437 0.83095 0.79186 0.87413 1.90768 1.56628 1.49517 1.48198 1.22761 0.79778 1.04211 0.97597 1.86133 1.20796 1.75376 1.40496 1.19167 0.92667 0.93868 0.86659 1.21399 1.01550 1.04343 0.94710 1.20893 0.94136 0.98734 0.97797 1.19679 0.93337 1.02138 0.97831 1.24812 1.03612 0.90644 0.99631 1.86448 1.69158 1.41527 1.40460 0.94308 0.77189 0.78940 0.81646 1.21021 1.00969 0.94051 0.91328 1.20732 0.91820 1.04523 1.00782 1.21496 0.94463 1.00903 0.97982 1.21480 0.95540 0.94499 1.02651 0.74692 0.91657 0.91292 0.90121 0.91538 0.92101 0.92057 0.74233 0.85944 0.85815 0.82187 0.85678 0.89022 0.74633 1.22200 1.21411 0.83534 0.84493 0.91145 0.90714 0.91720 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.41 19.25 74.32 1.43 1.02 16 2 C -0.21 -0.59 12.56 31.12 0.39 -0.20 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.06 16 4 H 0.09 -0.19 8.14 -2.39 -0.02 -0.20 16 5 C -0.11 0.47 5.16 30.60 0.16 0.63 16 6 C -0.11 0.80 5.08 30.60 0.16 0.95 16 7 C -0.09 0.60 2.22 -10.79 -0.02 0.58 16 8 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 9 C 0.13 -0.33 5.07 86.38 0.44 0.11 16 10 N -0.71 2.86 5.28 -463.07 -2.45 0.41 16 11 C 0.51 1.86 7.91 87.66 0.69 2.56 16 12 O -0.57 -8.81 16.50 16.00 0.26 -8.54 16 13 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 14 O -0.31 -2.52 9.67 -73.41 -0.71 -3.23 16 15 C 0.12 0.80 6.69 22.51 0.15 0.95 16 16 C -0.20 -0.56 9.04 22.37 0.20 -0.36 16 17 C -0.10 -0.45 8.66 22.25 0.19 -0.25 16 18 C -0.13 -0.65 5.38 -19.85 -0.11 -0.76 16 19 C -0.08 0.04 2.79 71.24 0.20 0.24 16 20 O -0.57 -0.01 12.81 -148.98 -1.91 -1.91 16 21 Si 0.77 -2.14 29.85 68.60 2.05 -0.09 16 22 C -0.06 -0.30 9.68 22.25 0.22 -0.08 16 23 C -0.16 -1.12 9.99 22.36 0.22 -0.90 16 24 C -0.11 0.58 5.20 30.59 0.16 0.74 16 25 C -0.10 0.34 5.16 30.59 0.16 0.49 16 26 H 0.24 -1.00 7.80 -4.42 -0.03 -1.04 16 27 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.08 -0.78 7.18 -2.39 -0.02 -0.80 16 30 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 33 H 0.42 -4.73 7.66 -92.71 -0.71 -5.44 16 34 H 0.12 -0.88 7.65 -2.39 -0.02 -0.90 16 35 H 0.12 -0.93 7.68 -2.39 -0.02 -0.95 16 36 H 0.16 -0.71 6.30 -2.91 -0.02 -0.73 16 37 H 0.13 0.35 4.86 -2.91 -0.01 0.33 16 38 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.40 -4.27 8.74 -74.06 -0.65 -4.92 16 40 H -0.29 -1.23 7.05 99.48 0.70 -0.53 16 41 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 42 H 0.15 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -26.60 387.38 1.87 -24.73 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -0.35 Total: -17.35 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 4.97 Total: 5.99 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.45 Total: 0.41 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -2.35 Total: -13.68 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: 2.05 Total: -0.09 kcal Total: -26.60 1.87 -24.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_2989410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.432 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds