Wall clock time and date at job start Sun Mar 7 2021 08:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 5 5 C 1.53000 * 109.46973 * 273.54516 * 3 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46963 * 299.99499 * 6 5 3 8 8 H 1.09002 * 109.47067 * 300.00341 * 7 6 5 9 9 C 1.53002 * 109.47454 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.46806 * 64.99922 * 9 7 6 11 11 C 1.34779 * 119.99794 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99730 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47314 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47160 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46821 * 180.02562 * 15 14 13 17 17 C 1.35903 * 116.99807 * 180.02562 * 16 15 14 18 18 C 1.38711 * 120.05641 * 179.97438 * 17 16 15 19 19 C 1.38170 * 119.94339 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.97123 * 180.02562 * 19 18 17 21 21 O 1.42905 * 109.47401 * 64.99663 * 20 19 18 22 22 Si 1.86294 * 109.47095 * 184.99771 * 20 19 18 23 23 C 1.38243 * 120.05730 * 359.97438 * 19 18 17 24 24 C 1.38291 * 120.11048 * 359.97438 * 23 19 18 25 25 C 1.38125 * 120.05484 * 359.76685 * 24 23 19 26 26 C 1.52997 * 109.47092 * 60.00194 * 7 6 5 27 27 C 1.53002 * 109.46938 * 33.54448 * 3 2 1 28 28 H 4.18748 * 15.03829 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.47194 * 299.99745 * 5 3 2 30 30 H 1.08992 * 109.47399 * 59.99917 * 5 3 2 31 31 H 1.09000 * 109.47437 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47508 * 59.99571 * 6 5 3 33 33 H 1.08998 * 109.47254 * 185.00083 * 9 7 6 34 34 H 1.09000 * 109.46519 * 305.00454 * 9 7 6 35 35 H 0.96991 * 119.99936 * 0.02562 * 10 9 7 36 36 H 1.09008 * 109.46908 * 299.99632 * 13 11 10 37 37 H 1.09000 * 109.47169 * 59.99378 * 13 11 10 38 38 H 1.08998 * 109.46934 * 299.99662 * 14 13 11 39 39 H 1.09000 * 109.47325 * 59.99700 * 14 13 11 40 40 H 1.08998 * 109.47230 * 299.99860 * 15 14 13 41 41 H 1.09000 * 109.47396 * 60.00111 * 15 14 13 42 42 H 1.08000 * 120.02503 * 359.97438 * 18 17 16 43 43 H 1.09002 * 109.47000 * 304.99629 * 20 19 18 44 44 H 0.96698 * 113.99460 * 59.99807 * 21 20 19 45 45 H 1.48500 * 110.00056 * 58.67961 * 22 20 19 46 46 H 1.48503 * 109.99945 * 179.97438 * 22 20 19 47 47 H 1.07995 * 119.94731 * 179.97438 * 23 19 18 48 48 H 1.07998 * 119.97134 * 180.02562 * 24 23 19 49 49 H 1.08002 * 120.02628 * 180.27952 * 25 24 23 50 50 H 1.09001 * 109.47375 * 180.02562 * 26 7 6 51 51 H 1.09002 * 109.47497 * 59.99850 * 26 7 6 52 52 H 1.09002 * 109.47075 * 299.99295 * 27 3 2 53 53 H 1.08996 * 109.47407 * 60.00252 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9209 -0.4579 5 6 3.1560 -0.0883 1.4398 6 6 4.6860 -0.0870 1.4398 7 6 5.1970 -1.2888 0.6426 8 1 4.8344 -2.2092 1.1003 9 6 6.7271 -1.2879 0.6430 10 7 7.2150 -1.4931 2.0091 11 6 8.5400 -1.5285 2.2532 12 8 9.3283 -1.3909 1.3418 13 6 9.0420 -1.7402 3.6582 14 6 10.5720 -1.7392 3.6587 15 6 11.0816 -1.9535 5.0854 16 8 12.5106 -1.9520 5.0859 17 6 13.1273 -2.1322 6.2835 18 6 14.5125 -2.1423 6.3571 19 6 15.1370 -2.3262 7.5758 20 6 16.6418 -2.3368 7.6565 21 8 17.1469 -1.0476 7.3028 22 14 17.1674 -2.7542 9.3943 23 6 14.3827 -2.4996 8.7212 24 6 13.0016 -2.4888 8.6506 25 6 12.3725 -2.3000 7.4356 26 6 4.6870 -1.1999 -0.7971 27 6 3.1565 -1.2014 -0.7971 28 1 -1.0501 -0.0007 0.0009 29 1 2.7923 0.7681 2.0076 30 1 2.7931 -1.0084 1.8976 31 1 5.0494 -0.1508 2.4654 32 1 5.0486 0.8334 0.9820 33 1 7.0911 -2.0913 0.0026 34 1 7.0899 -0.3311 0.2675 35 1 6.5845 -1.6035 2.7378 36 1 8.6776 -0.9372 4.2990 37 1 8.6795 -2.6973 4.0332 38 1 10.9360 -2.5424 3.0181 39 1 10.9349 -0.7823 3.2836 40 1 10.7176 -1.1501 5.7257 41 1 10.7188 -2.9103 5.4610 42 1 15.1022 -2.0073 5.4624 43 1 17.0374 -3.0835 6.9680 44 1 16.8354 -0.3327 7.8746 45 1 16.6218 -4.0787 9.7857 46 1 18.6495 -2.7684 9.4871 47 1 14.8727 -2.6436 9.6727 48 1 12.4145 -2.6241 9.5469 49 1 11.2939 -2.2872 7.3817 50 1 5.0507 -2.0563 -1.3650 51 1 5.0495 -0.2795 -1.2549 52 1 2.7937 -2.1216 -0.3392 53 1 2.7932 -1.1380 -1.8228 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_4549616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:26:17 Heat of formation + Delta-G solvation = -50.998649 kcal Electronic energy + Delta-G solvation = -29765.924237 eV Core-core repulsion = 25569.773009 eV Total energy + Delta-G solvation = -4196.151228 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.198 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.29907 -40.94959 -39.84581 -39.16806 -37.29611 -36.37070 -34.88941 -34.16555 -32.45024 -31.80348 -31.60964 -31.10962 -28.63323 -26.98986 -26.39661 -23.84570 -23.68288 -23.44889 -22.60139 -21.83970 -21.41226 -20.74284 -19.19071 -19.02876 -18.14601 -17.81384 -17.48079 -17.14389 -16.92146 -16.82442 -16.62419 -16.21479 -16.09114 -15.66146 -15.40210 -15.26511 -15.11126 -14.94461 -14.72391 -14.54074 -14.21114 -14.16896 -13.91693 -13.67073 -13.33332 -13.21030 -13.16382 -13.10603 -13.03909 -12.70979 -12.43288 -12.30758 -12.23865 -12.09266 -12.01375 -11.68458 -11.61396 -11.58542 -11.56026 -11.49894 -10.99116 -10.90005 -10.77807 -10.48618 -10.09479 -9.92463 -9.23639 -4.98877 0.22325 0.41609 1.29870 1.63495 1.65901 1.86755 1.89146 1.92415 2.01418 2.42060 2.69179 3.34648 3.51001 3.64570 3.69022 3.70709 3.77800 3.79340 3.86135 3.88798 3.98988 4.11998 4.13841 4.21516 4.26085 4.28848 4.35316 4.38112 4.41698 4.42474 4.46057 4.47061 4.53234 4.53997 4.64332 4.67564 4.69101 4.76748 4.87734 4.95213 4.99215 5.01736 5.11395 5.14972 5.17031 5.20346 5.21594 5.29124 5.29719 5.36047 5.39590 5.43825 5.46162 5.53912 5.75994 6.43728 6.55074 6.69180 6.74999 7.26670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.210 4.210 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.088 4.088 8 H 0.089 0.911 9 C 0.124 3.876 10 N -0.717 5.717 11 C 0.506 3.494 12 O -0.593 6.593 13 C -0.127 4.127 14 C -0.102 4.102 15 C 0.058 3.942 16 O -0.340 6.340 17 C 0.116 3.884 18 C -0.154 4.154 19 C -0.086 4.086 20 C -0.085 4.085 21 O -0.557 6.557 22 Si 0.793 3.207 23 C -0.158 4.158 24 C -0.072 4.072 25 C -0.205 4.205 26 C -0.111 4.111 27 C -0.104 4.104 28 H 0.237 0.763 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.396 0.604 45 H -0.282 1.282 46 H -0.300 1.300 47 H 0.151 0.849 48 H 0.161 0.839 49 H 0.154 0.846 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.066 0.934 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 0.499 7.485 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.210 4.210 3 C -0.002 4.002 4 H 0.110 0.890 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.107 4.107 8 H 0.107 0.893 9 C 0.000 4.000 10 N -0.370 5.370 11 C 0.294 3.706 12 O -0.473 6.473 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.016 4.016 16 O -0.255 6.255 17 C 0.070 3.930 18 C -0.173 4.173 19 C -0.086 4.086 20 C -0.193 4.193 21 O -0.366 6.366 22 Si 0.698 3.302 23 C -0.176 4.176 24 C -0.090 4.090 25 C -0.224 4.224 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.253 0.747 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.246 0.754 45 H -0.209 1.209 46 H -0.229 1.229 47 H 0.168 0.832 48 H 0.178 0.822 49 H 0.172 0.828 50 H 0.091 0.909 51 H 0.087 0.913 52 H 0.085 0.915 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.492 -0.262 6.670 9.312 hybrid contribution -0.610 -0.225 -1.032 1.219 sum -7.102 -0.488 5.639 9.081 Atomic orbital electron populations 1.25687 0.96992 1.00449 1.00234 1.23694 0.95339 1.00934 1.01002 1.18472 0.83454 1.00220 0.98041 0.89021 1.21499 0.95806 1.02740 0.94173 1.21602 0.94242 0.97916 1.01007 1.21346 0.92137 1.00184 0.97048 0.89277 1.21352 0.94224 1.01023 0.83372 1.45932 1.06781 1.73294 1.10950 1.21192 0.82348 0.75140 0.91922 1.90739 1.56693 1.51422 1.48483 1.21533 0.94623 1.07430 0.93062 1.21155 0.94879 1.03047 0.94974 1.22999 0.77043 1.03266 0.98318 1.86056 1.23183 1.87296 1.28943 1.19208 0.92264 0.96364 0.85120 1.20335 0.91829 1.06466 0.98662 1.20212 0.96183 0.99248 0.92957 1.25399 0.91129 0.89047 1.13757 1.86478 1.72598 1.16755 1.60728 0.93562 0.76819 0.83293 0.76530 1.21186 0.94755 1.04097 0.97545 1.21330 0.94284 0.95282 0.98085 1.21614 1.01408 1.07253 0.92121 1.21508 0.94477 1.03073 0.95823 1.21489 0.95534 0.97218 0.99932 0.74656 0.91576 0.91305 0.90005 0.91677 0.92663 0.92582 0.74488 0.85283 0.85459 0.92376 0.92213 0.89642 0.89891 0.86863 0.88223 0.75450 1.20903 1.22867 0.83233 0.82157 0.82824 0.90926 0.91270 0.91509 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.35 19.25 74.32 1.43 1.08 16 2 C -0.21 -0.55 12.56 31.13 0.39 -0.16 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.06 16 4 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 5 C -0.10 0.50 5.16 30.59 0.16 0.65 16 6 C -0.11 0.80 5.08 30.60 0.16 0.95 16 7 C -0.09 0.58 2.22 -10.79 -0.02 0.56 16 8 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 9 C 0.12 -0.30 5.07 86.38 0.44 0.13 16 10 N -0.72 3.39 5.28 -463.05 -2.45 0.94 16 11 C 0.51 0.53 7.83 87.65 0.69 1.22 16 12 O -0.59 -7.44 15.98 -3.03 -0.05 -7.49 16 13 C -0.13 0.87 5.70 29.85 0.17 1.04 16 14 C -0.10 -0.02 4.87 30.59 0.15 0.13 16 15 C 0.06 -0.14 4.74 71.98 0.34 0.20 16 16 O -0.34 -2.16 10.14 -92.46 -0.94 -3.10 16 17 C 0.12 0.59 6.69 22.51 0.15 0.74 16 18 C -0.15 -1.05 9.62 22.37 0.22 -0.84 16 19 C -0.09 -0.23 5.35 -19.88 -0.11 -0.34 16 20 C -0.08 -0.17 2.80 71.23 0.20 0.03 16 21 O -0.56 -1.78 12.83 -148.98 -1.91 -3.69 16 22 Si 0.79 -1.36 29.80 68.60 2.04 0.69 16 23 C -0.16 0.25 8.67 22.28 0.19 0.44 16 24 C -0.07 0.22 10.04 22.26 0.22 0.45 16 25 C -0.21 0.19 9.04 22.37 0.20 0.39 16 26 C -0.11 0.54 5.21 30.61 0.16 0.70 16 27 C -0.10 0.32 5.16 30.61 0.16 0.48 16 28 H 0.24 -1.08 7.80 -4.41 -0.03 -1.12 16 29 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.08 -0.82 7.18 -2.39 -0.02 -0.83 16 32 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.42 -4.82 7.65 -92.72 -0.71 -5.53 16 36 H 0.13 -1.63 8.14 -2.38 -0.02 -1.65 16 37 H 0.13 -1.57 8.14 -2.39 -0.02 -1.59 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 40 H 0.09 -0.57 7.65 -2.39 -0.02 -0.59 16 41 H 0.08 -0.52 7.68 -2.39 -0.02 -0.54 16 42 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.10 0.41 7.96 -2.39 -0.02 0.39 16 44 H 0.40 -2.16 8.70 -74.06 -0.64 -2.81 16 45 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 46 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16 47 H 0.15 -0.99 4.90 -2.91 -0.01 -1.01 16 48 H 0.16 -1.49 8.06 -2.91 -0.02 -1.52 16 49 H 0.15 -1.01 6.30 -2.91 -0.02 -1.03 16 50 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 51 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 52 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 53 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -26.55 429.85 1.54 -25.00 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -0.42 Total: -20.15 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.26 Total: 7.79 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -2.45 Total: 0.94 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -2.90 Total: -14.28 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.04 Total: 0.69 kcal Total: -26.55 1.54 -25.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_4549616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.994 kcal (2) G-P(sol) polarization free energy of solvation -26.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds