Wall clock time and date at job start Sun Mar 7 2021 08:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46603 * 213.90111 * 3 2 1 5 5 C 1.53002 * 109.47128 * 333.89724 * 3 2 1 6 6 C 1.53002 * 109.46735 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46949 * 300.00058 * 6 5 3 8 8 H 1.09000 * 109.47619 * 299.99947 * 7 6 5 9 9 C 1.53001 * 109.46944 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47329 * 175.00144 * 9 7 6 11 11 C 1.34783 * 120.00094 * 179.97438 * 10 9 7 12 12 O 1.21610 * 119.99899 * 0.02562 * 11 10 9 13 13 C 1.47378 * 119.99752 * 179.97438 * 11 10 9 14 14 C 1.36416 * 127.19116 * 180.02562 * 13 11 10 15 15 C 1.50706 * 125.79910 * 359.95798 * 14 13 11 16 16 O 1.42900 * 109.46748 * 89.72065 * 15 14 13 17 17 C 1.35904 * 116.99600 * 179.97438 * 16 15 14 18 18 C 1.38737 * 120.05249 * 180.02562 * 17 16 15 19 19 C 1.38141 * 119.94063 * 180.02562 * 18 17 16 20 20 C 1.38269 * 120.05706 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.94114 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47186 * 65.00484 * 21 20 19 23 23 Si 1.86302 * 109.46768 * 185.00163 * 21 20 19 24 24 C 1.38263 * 120.11156 * 0.25962 * 20 19 18 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 20 19 26 26 O 1.33652 * 108.40141 * 179.70011 * 14 13 11 27 27 C 1.34215 * 110.90454 * 0.26018 * 26 14 13 28 28 C 1.34179 * 109.12606 * 0.02562 * 27 26 14 29 29 C 1.53002 * 109.47450 * 60.00380 * 7 6 5 30 30 C 1.52997 * 109.46870 * 93.89975 * 3 2 1 31 31 H 4.18732 * 15.03938 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.47063 * 60.00669 * 5 3 2 33 33 H 1.08995 * 109.47242 * 300.00314 * 5 3 2 34 34 H 1.09004 * 109.46732 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47290 * 60.00065 * 6 5 3 36 36 H 1.09003 * 109.47317 * 54.99618 * 9 7 6 37 37 H 1.09000 * 109.47075 * 294.99890 * 9 7 6 38 38 H 0.97002 * 119.99843 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.47109 * 329.71866 * 15 14 13 40 40 H 1.08998 * 109.47060 * 209.71926 * 15 14 13 41 41 H 1.07994 * 120.02908 * 359.97438 * 18 17 16 42 42 H 1.07998 * 119.97159 * 180.02562 * 19 18 17 43 43 H 1.08992 * 109.47155 * 305.00081 * 21 20 19 44 44 H 0.96699 * 114.00071 * 179.97438 * 22 21 20 45 45 H 1.48503 * 110.00170 * 300.00296 * 23 21 20 46 46 H 1.48497 * 109.99882 * 61.31949 * 23 21 20 47 47 H 1.08001 * 119.97259 * 179.69844 * 24 20 19 48 48 H 1.07992 * 120.02912 * 180.24892 * 25 24 20 49 49 H 1.08005 * 125.43896 * 179.97438 * 27 26 14 50 50 H 1.07996 * 127.02567 * 180.02562 * 28 27 26 51 51 H 1.09003 * 109.46751 * 59.99928 * 29 7 6 52 52 H 1.08995 * 109.47242 * 179.97438 * 29 7 6 53 53 H 1.08998 * 109.47130 * 299.99672 * 30 3 2 54 54 H 1.09004 * 109.47306 * 60.00038 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8538 0.5732 5 6 3.1566 -1.2945 0.6347 6 6 4.6866 -1.2934 0.6352 7 6 5.1970 -1.1948 -0.8037 8 1 4.8345 -2.0479 -1.3772 9 6 6.7270 -1.1944 -0.8032 10 7 7.2158 -1.2204 -2.1840 11 6 8.5410 -1.2242 -2.4298 12 8 9.3310 -1.2065 -1.5054 13 6 9.0327 -1.2509 -3.8189 14 6 10.3323 -1.2584 -4.2337 15 6 11.5438 -1.2398 -3.3374 16 8 11.9235 -2.5808 -3.0219 17 6 13.0065 -2.7421 -2.2169 18 6 13.4310 -4.0167 -1.8706 19 6 14.5318 -4.1780 -1.0517 20 6 15.2100 -3.0706 -0.5769 21 6 16.4102 -3.2495 0.3168 22 8 17.4553 -3.8957 -0.4129 23 14 17.0013 -1.5831 0.9038 24 6 14.7853 -1.7992 -0.9158 25 6 13.6887 -1.6326 -1.7393 26 8 10.3486 -1.2909 -5.5697 27 6 9.1007 -1.2997 -6.0638 28 6 8.2252 -1.2722 -5.0473 29 6 4.6864 0.1003 -1.4384 30 6 3.1559 0.0990 -1.4392 31 1 -1.0500 -0.0010 -0.0001 32 1 2.7937 -2.1477 0.0615 33 1 2.7933 -1.3646 1.6599 34 1 5.0504 -2.2164 1.0870 35 1 5.0492 -0.4403 1.2086 36 1 7.0905 -2.0744 -0.2725 37 1 7.0899 -0.2947 -0.3063 38 1 6.5857 -1.2349 -2.9214 39 1 11.3077 -0.7032 -2.4186 40 1 12.3664 -0.7400 -3.8489 41 1 12.9010 -4.8820 -2.2402 42 1 14.8630 -5.1700 -0.7822 43 1 16.1354 -3.8610 1.1761 44 1 18.2609 -4.0433 0.1012 45 1 17.3791 -0.7398 -0.2587 46 1 15.9345 -0.9143 1.6911 47 1 15.3137 -0.9356 -0.5397 48 1 13.3598 -0.6394 -2.0070 49 1 8.8425 -1.3241 -7.1122 50 1 7.1475 -1.2713 -5.1171 51 1 5.0490 0.9535 -0.8650 52 1 5.0504 0.1708 -2.4634 53 1 2.7930 -0.7542 -2.0123 54 1 2.7921 1.0217 -1.8913 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_4549634.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:26:31 Heat of formation + Delta-G solvation = -13.606228 kcal Electronic energy + Delta-G solvation = -35714.396630 eV Core-core repulsion = 30972.043864 eV Total energy + Delta-G solvation = -4742.352765 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.182 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.77230 -41.41990 -40.87876 -39.78828 -39.22992 -37.26167 -36.41742 -34.51316 -33.91485 -32.99312 -32.14969 -31.81522 -31.56407 -31.43526 -28.25763 -27.05510 -26.15138 -24.58095 -23.96484 -23.68113 -22.91688 -22.35610 -21.95272 -21.27085 -20.67938 -19.65143 -19.21643 -19.03658 -18.36553 -17.75138 -17.32231 -17.18518 -17.00190 -16.81603 -16.70495 -16.51339 -16.11337 -15.91316 -15.69250 -15.55308 -15.39024 -15.20632 -14.94524 -14.76384 -14.56535 -14.37034 -14.06637 -14.00946 -13.86862 -13.84387 -13.65276 -13.56229 -13.25343 -13.15151 -13.14496 -12.55253 -12.45838 -12.28399 -12.11247 -12.06462 -11.90600 -11.71786 -11.59251 -11.52974 -11.21059 -11.02239 -10.94941 -10.80367 -10.29937 -10.22632 -10.21382 -9.87730 -9.37282 -4.96686 -0.10226 0.08580 0.14137 0.99407 1.29946 1.44764 1.62839 1.85802 1.88275 1.95983 2.00025 2.09946 2.38699 2.47181 3.25996 3.32480 3.40791 3.52618 3.55717 3.63962 3.68116 3.69369 3.74355 3.76326 3.82384 3.91891 4.00648 4.11203 4.11940 4.25825 4.28631 4.35210 4.38938 4.40379 4.42862 4.43268 4.51725 4.54284 4.56100 4.64193 4.72542 4.75353 4.77903 4.83937 4.91650 5.00025 5.06645 5.09276 5.12079 5.17545 5.19383 5.22375 5.26561 5.30677 5.32315 5.35942 5.49681 5.53170 5.83616 6.10809 6.39851 6.68243 6.93108 7.06157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.209 4.209 3 C 0.017 3.983 4 H 0.093 0.907 5 C -0.104 4.104 6 C -0.110 4.110 7 C -0.089 4.089 8 H 0.088 0.912 9 C 0.126 3.874 10 N -0.704 5.704 11 C 0.581 3.419 12 O -0.575 6.575 13 C -0.221 4.221 14 C 0.037 3.963 15 C 0.134 3.866 16 O -0.318 6.318 17 C 0.125 3.875 18 C -0.156 4.156 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.072 4.072 22 O -0.564 6.564 23 Si 0.773 3.227 24 C -0.099 4.099 25 C -0.207 4.207 26 O -0.178 6.178 27 C -0.011 4.011 28 C -0.195 4.195 29 C -0.111 4.111 30 C -0.104 4.104 31 H 0.237 0.763 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.096 0.904 44 H 0.403 0.597 45 H -0.297 1.297 46 H -0.292 1.292 47 H 0.122 0.878 48 H 0.143 0.857 49 H 0.254 0.746 50 H 0.194 0.806 51 H 0.067 0.933 52 H 0.077 0.923 53 H 0.068 0.932 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 0.069 -0.733 2.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.209 4.209 3 C -0.001 4.001 4 H 0.111 0.889 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.108 4.108 8 H 0.106 0.894 9 C 0.003 3.997 10 N -0.356 5.356 11 C 0.369 3.631 12 O -0.457 6.457 13 C -0.225 4.225 14 C -0.016 4.016 15 C 0.060 3.940 16 O -0.232 6.232 17 C 0.080 3.920 18 C -0.174 4.174 19 C -0.071 4.071 20 C -0.129 4.129 21 C -0.182 4.182 22 O -0.374 6.374 23 Si 0.680 3.320 24 C -0.116 4.116 25 C -0.225 4.225 26 O -0.074 6.074 27 C -0.076 4.076 28 C -0.214 4.214 29 C -0.148 4.148 30 C -0.142 4.142 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.252 0.748 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.113 0.887 44 H 0.254 0.746 45 H -0.225 1.225 46 H -0.220 1.220 47 H 0.139 0.861 48 H 0.161 0.839 49 H 0.269 0.731 50 H 0.211 0.789 51 H 0.085 0.915 52 H 0.096 0.904 53 H 0.087 0.913 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.078 0.806 -0.810 2.372 hybrid contribution -1.284 0.130 -0.477 1.376 sum -3.362 0.936 -1.287 3.719 Atomic orbital electron populations 1.25680 0.96988 1.00416 1.00274 1.23673 0.95309 1.00936 1.00985 1.18465 0.83480 0.99781 0.98411 0.88899 1.21480 0.95455 0.96273 1.00953 1.21491 0.94540 1.03207 0.95513 1.21358 0.91837 0.99598 0.97976 0.89371 1.21450 0.94450 1.01917 0.81899 1.45670 1.05797 1.74094 1.10044 1.17441 0.82995 0.75722 0.86930 1.90782 1.56446 1.52036 1.46393 1.21402 0.93477 1.12894 0.94776 1.21954 0.95058 1.03021 0.81532 1.21115 0.92651 0.83229 0.96994 1.86053 1.44131 1.29033 1.63966 1.19141 0.86679 0.94835 0.91326 1.20743 0.99393 0.95167 1.02138 1.21060 0.92365 0.99654 0.93982 1.19664 0.98275 0.93106 1.01817 1.24725 0.87943 1.09686 0.95859 1.86446 1.26650 1.81697 1.42560 0.94539 0.84722 0.73336 0.79450 1.20843 0.96678 0.96723 0.97375 1.21309 0.99090 0.98825 1.03321 1.83793 1.33364 1.70565 1.19630 1.24952 0.78681 1.02225 1.01753 1.23257 1.02175 1.07261 0.88710 1.21613 0.94424 0.97134 1.01672 1.21503 0.95601 1.02675 0.94401 0.74666 0.91549 0.91622 0.90799 0.91024 0.92218 0.91883 0.74758 0.87699 0.88586 0.83800 0.82864 0.88654 0.74553 1.22464 1.21960 0.86054 0.83931 0.73053 0.78892 0.91458 0.90424 0.91335 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.43 19.25 74.32 1.43 1.00 16 2 C -0.21 -0.63 12.56 31.13 0.39 -0.24 16 3 C 0.02 -0.02 2.56 -12.60 -0.03 -0.05 16 4 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.10 0.27 5.16 30.60 0.16 0.43 16 6 C -0.11 0.48 5.20 30.59 0.16 0.63 16 7 C -0.09 0.47 2.22 -10.79 -0.02 0.44 16 8 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 9 C 0.13 -0.08 5.07 86.38 0.44 0.36 16 10 N -0.70 0.17 5.28 -466.41 -2.46 -2.29 16 11 C 0.58 4.24 7.81 86.65 0.68 4.92 16 12 O -0.58 -8.64 14.85 -4.06 -0.06 -8.70 16 13 C -0.22 -1.09 6.31 -18.99 -0.12 -1.21 16 14 C 0.04 0.26 7.00 25.26 0.18 0.44 16 15 C 0.13 1.07 4.73 71.24 0.34 1.41 16 16 O -0.32 -3.86 10.12 -92.47 -0.94 -4.79 16 17 C 0.13 1.42 6.69 22.51 0.15 1.58 16 18 C -0.16 -1.44 9.99 22.37 0.22 -1.21 16 19 C -0.05 -0.38 9.68 22.25 0.22 -0.17 16 20 C -0.13 -1.03 5.39 -19.85 -0.11 -1.14 16 21 C -0.07 -0.12 2.79 71.24 0.20 0.08 16 22 O -0.56 -0.73 12.81 -148.98 -1.91 -2.64 16 23 Si 0.77 0.14 29.84 68.60 2.05 2.19 16 24 C -0.10 -0.95 8.66 22.25 0.19 -0.76 16 25 C -0.21 -2.04 9.04 22.37 0.20 -1.83 16 26 O -0.18 -0.72 10.52 4.47 0.05 -0.68 16 27 C -0.01 0.04 12.03 66.89 0.80 0.84 16 28 C -0.20 0.60 10.60 23.65 0.25 0.85 16 29 C -0.11 0.65 5.08 30.61 0.16 0.81 16 30 C -0.10 0.40 5.16 30.61 0.16 0.56 16 31 H 0.24 -0.99 7.80 -4.42 -0.03 -1.02 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 35 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.41 -2.59 6.83 -92.71 -0.63 -3.23 16 39 H 0.11 0.98 6.02 -2.39 -0.01 0.97 16 40 H 0.10 0.37 7.66 -2.39 -0.02 0.35 16 41 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.10 -0.26 7.96 -2.39 -0.02 -0.28 16 44 H 0.40 -3.86 8.74 -74.06 -0.65 -4.51 16 45 H -0.30 -2.23 7.05 99.48 0.70 -1.53 16 46 H -0.29 -1.80 7.11 99.48 0.71 -1.09 16 47 H 0.12 1.00 4.86 -2.91 -0.01 0.98 16 48 H 0.14 0.86 6.30 -2.91 -0.02 0.84 16 49 H 0.25 -3.25 8.06 -2.91 -0.02 -3.27 16 50 H 0.19 -2.05 7.74 -2.91 -0.02 -2.07 16 51 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 52 H 0.08 -0.61 7.18 -2.39 -0.02 -0.63 16 53 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 54 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: 0.00 -27.18 445.40 2.45 -24.73 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -0.31 Total: -15.55 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.04 Total: 7.72 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -2.46 Total: -2.29 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -2.86 Total: -16.81 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: 2.05 Total: 2.19 kcal Total: -27.18 2.45 -24.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_4549634.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.126 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds