Wall clock time and date at job start Sun Mar 7 2021 08:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46995 * 69.83745 * 3 2 1 5 5 C 1.52996 * 109.47002 * 189.84461 * 3 2 1 6 6 C 1.52997 * 109.47180 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46951 * 299.99886 * 6 5 3 8 8 H 1.09004 * 109.47149 * 299.99549 * 7 6 5 9 9 C 1.52997 * 109.46951 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.46958 * 174.99636 * 9 7 6 11 11 C 1.34785 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99912 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.47036 * 180.02562 * 13 11 10 15 15 C 1.36831 * 125.06490 * 265.08328 * 14 13 11 16 16 C 1.34231 * 109.93657 * 180.34279 * 15 14 13 17 17 C 1.50706 * 126.49949 * 179.71710 * 16 15 14 18 18 O 1.42903 * 109.46949 * 105.03923 * 17 16 15 19 19 Si 1.86297 * 109.47021 * 345.04042 * 17 16 15 20 20 C 1.46484 * 107.00213 * 359.75218 * 16 15 14 21 21 C 1.39591 * 134.04095 * 180.02562 * 20 16 15 22 22 C 1.36663 * 119.76983 * 179.97438 * 21 20 16 23 23 C 1.38790 * 120.52229 * 359.97438 * 22 21 20 24 24 C 1.37780 * 120.67062 * 359.97438 * 23 22 21 25 25 C 1.37692 * 125.05907 * 84.99675 * 14 13 11 26 26 C 1.52999 * 109.47412 * 59.99909 * 7 6 5 27 27 C 1.52997 * 109.47011 * 300.00352 * 26 7 6 28 28 H 4.18739 * 15.03881 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.47222 * 59.99681 * 5 3 2 30 30 H 1.09008 * 109.46714 * 299.99937 * 5 3 2 31 31 H 1.09005 * 109.47194 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.47338 * 59.99710 * 6 5 3 33 33 H 1.09009 * 109.47420 * 55.00304 * 9 7 6 34 34 H 1.08997 * 109.47322 * 294.99883 * 9 7 6 35 35 H 0.96999 * 120.00512 * 0.02562 * 10 9 7 36 36 H 1.08996 * 109.46974 * 60.00310 * 13 11 10 37 37 H 1.08997 * 109.47252 * 300.00364 * 13 11 10 38 38 H 1.08002 * 125.03246 * 0.09206 * 15 14 13 39 39 H 1.08995 * 109.47205 * 225.04285 * 17 16 15 40 40 H 0.96701 * 113.99555 * 180.02562 * 18 17 16 41 41 H 1.48501 * 110.00040 * 298.68136 * 19 17 16 42 42 H 1.48506 * 109.99910 * 59.99928 * 19 17 16 43 43 H 1.08002 * 120.11381 * 359.96172 * 21 20 16 44 44 H 1.07997 * 119.73771 * 180.02562 * 22 21 20 45 45 H 1.07999 * 119.66094 * 180.02562 * 23 22 21 46 46 H 1.07998 * 120.11554 * 180.02562 * 24 23 22 47 47 H 1.08997 * 109.46637 * 59.99986 * 26 7 6 48 48 H 1.08996 * 109.47378 * 180.02562 * 26 7 6 49 49 H 1.09005 * 109.47095 * 299.99690 * 27 26 7 50 50 H 1.08997 * 109.47334 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0096 -0.3534 -0.9647 5 6 3.1554 1.4221 0.2466 6 6 4.6854 1.4230 0.2460 7 6 5.1963 0.4989 1.3532 8 1 4.8332 0.8527 2.3182 9 6 6.7263 0.5002 1.3530 10 7 7.2154 -0.2888 2.4863 11 6 8.5407 -0.4288 2.6880 12 8 9.3283 0.0987 1.9315 13 6 9.0439 -1.2410 3.8535 14 7 10.5089 -1.2396 3.8534 15 6 11.2958 -2.2091 3.2940 16 6 12.5914 -1.9082 3.4754 17 6 13.7736 -2.7219 3.0154 18 8 14.3714 -2.0935 1.8797 19 14 13.2057 -4.4342 2.5505 20 6 12.6381 -0.6394 4.2060 21 6 13.6721 0.1708 4.6784 22 6 13.3777 1.3284 5.3423 23 6 12.0583 1.7056 5.5505 24 6 11.0224 0.9215 5.0919 25 6 11.2990 -0.2616 4.4149 26 6 4.6870 -0.9226 1.1067 27 6 3.1570 -0.9234 1.1072 28 1 -1.0499 0.0003 -0.0005 29 1 2.7919 1.7761 1.2114 30 1 2.7917 2.0804 -0.5425 31 1 5.0483 2.4358 0.4213 32 1 5.0486 1.0691 -0.7189 33 1 7.0888 1.5245 1.4401 34 1 7.0899 0.0639 0.4227 35 1 6.5856 -0.7110 3.0912 36 1 8.6811 -2.2651 3.7663 37 1 8.6805 -0.8049 4.7840 38 1 10.9290 -3.0885 2.7856 39 1 14.5048 -2.7879 3.8211 40 1 15.1400 -2.5640 1.5292 41 1 12.6108 -5.1102 3.7313 42 1 12.2083 -4.3580 1.4529 43 1 14.7011 -0.1163 4.5198 44 1 14.1780 1.9551 5.7072 45 1 11.8416 2.6235 6.0766 46 1 9.9991 1.2238 5.2585 47 1 5.0502 -1.2764 0.1418 48 1 5.0506 -1.5809 1.8957 49 1 2.7938 -0.5696 2.0722 50 1 2.7941 -1.9362 0.9320 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:37 Heat of formation + Delta-G solvation = 43.819228 kcal Electronic energy + Delta-G solvation = -30376.701840 eV Core-core repulsion = 26337.003843 eV Total energy + Delta-G solvation = -4039.697997 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.63775 -40.95961 -39.86246 -38.12099 -37.62979 -36.43521 -34.46153 -34.11146 -31.93649 -31.80721 -31.23683 -30.36958 -29.18156 -26.99069 -25.53573 -23.90645 -23.73328 -23.05141 -22.54012 -21.71852 -20.87760 -20.61647 -19.06558 -18.65337 -18.34168 -18.25001 -17.79874 -16.87917 -16.67492 -16.51427 -16.26123 -15.81884 -15.66052 -15.49117 -15.28150 -15.12718 -14.90439 -14.86478 -14.79930 -14.48556 -14.18851 -14.05387 -13.71818 -13.61357 -13.42340 -13.21683 -13.14705 -12.76469 -12.64570 -12.51851 -12.47679 -12.13991 -12.04670 -11.81374 -11.75103 -11.61944 -11.55876 -11.24338 -10.97420 -10.82953 -10.63814 -10.26744 -10.17443 -9.25939 -8.73599 -4.95634 0.04251 0.56893 1.25209 1.33932 1.35501 1.57874 1.70334 1.83906 1.86272 1.98561 2.11010 2.87942 3.30246 3.45760 3.50347 3.59763 3.65109 3.67387 3.72402 3.73717 3.81376 3.97925 4.00206 4.08327 4.17972 4.22508 4.23318 4.32995 4.34744 4.40490 4.40535 4.49062 4.51785 4.60101 4.61734 4.67584 4.71047 4.79610 4.84033 4.89251 5.06570 5.07249 5.09235 5.15049 5.16867 5.23611 5.26562 5.32532 5.44283 5.46990 5.58601 5.65462 5.66227 6.04619 6.15376 6.37105 6.66337 6.99424 7.04027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.210 4.210 3 C 0.016 3.984 4 H 0.091 0.909 5 C -0.104 4.104 6 C -0.111 4.111 7 C -0.087 4.087 8 H 0.092 0.908 9 C 0.127 3.873 10 N -0.708 5.708 11 C 0.489 3.511 12 O -0.574 6.574 13 C 0.086 3.914 14 N -0.468 5.468 15 C 0.053 3.947 16 C -0.181 4.181 17 C -0.052 4.052 18 O -0.571 6.571 19 Si 0.789 3.211 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.137 4.137 25 C 0.089 3.911 26 C -0.111 4.111 27 C -0.105 4.105 28 H 0.237 0.763 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.420 0.580 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.175 0.825 39 H 0.080 0.920 40 H 0.398 0.602 41 H -0.282 1.282 42 H -0.294 1.294 43 H 0.128 0.872 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.133 0.867 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 -3.928 3.182 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.210 4.210 3 C -0.002 4.002 4 H 0.109 0.891 5 C -0.141 4.141 6 C -0.149 4.149 7 C -0.106 4.106 8 H 0.110 0.890 9 C 0.003 3.997 10 N -0.362 5.362 11 C 0.274 3.726 12 O -0.453 6.453 13 C -0.038 4.038 14 N -0.150 5.150 15 C -0.073 4.073 16 C -0.188 4.188 17 C -0.161 4.161 18 O -0.380 6.380 19 Si 0.692 3.308 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.016 4.016 26 C -0.148 4.148 27 C -0.142 4.142 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.192 0.808 39 H 0.098 0.902 40 H 0.249 0.751 41 H -0.208 1.208 42 H -0.222 1.222 43 H 0.146 0.854 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.151 0.849 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.054 -3.689 2.677 6.100 hybrid contribution -0.772 0.534 0.088 0.942 sum -4.826 -3.155 2.765 6.394 Atomic orbital electron populations 1.25685 0.96986 1.00136 1.00456 1.23671 0.95308 1.01056 1.00955 1.18463 0.83504 0.97383 1.00827 0.89073 1.21477 0.95408 0.94729 1.02518 1.21497 0.94589 0.99964 0.98836 1.21347 0.91766 0.96643 1.00843 0.89016 1.21375 0.94415 0.95230 0.88648 1.45822 1.06039 1.53371 1.30962 1.21392 0.83059 0.81325 0.86804 1.90813 1.56707 1.49356 1.48398 1.21993 0.77557 1.05017 0.99275 1.43382 1.05297 1.18289 1.48072 1.21711 0.90343 0.95059 1.00148 1.20057 0.93548 0.97667 1.07570 1.24344 0.94980 1.05746 0.91003 1.86516 1.50148 1.55040 1.46329 0.94139 0.84589 0.74423 0.77608 1.19362 0.93089 0.96584 1.03330 1.20499 0.98269 0.94219 0.97047 1.20982 0.97513 0.97274 1.01215 1.21194 0.91991 0.99756 0.99173 1.20266 1.00677 0.92863 1.01893 1.18495 0.90061 0.92713 1.00314 1.21606 0.94385 0.95874 1.02959 1.21497 0.95683 0.99013 0.98021 0.74656 0.91403 0.91758 0.90887 0.91353 0.92549 0.92642 0.74216 0.82644 0.83351 0.80828 0.90227 0.75134 1.20827 1.22182 0.85400 0.83815 0.83211 0.84865 0.91745 0.90007 0.91207 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.38 19.25 74.32 1.43 1.05 16 2 C -0.21 -0.58 12.56 31.13 0.39 -0.19 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.06 16 4 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.10 0.31 5.16 30.59 0.16 0.47 16 6 C -0.11 0.52 5.20 30.59 0.16 0.68 16 7 C -0.09 0.57 2.22 -10.79 -0.02 0.55 16 8 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 9 C 0.13 -0.26 5.07 86.38 0.44 0.17 16 10 N -0.71 3.14 5.28 -463.05 -2.45 0.69 16 11 C 0.49 1.40 7.90 87.66 0.69 2.09 16 12 O -0.57 -8.91 16.42 -3.01 -0.05 -8.96 16 13 C 0.09 -0.23 6.48 85.63 0.56 0.33 16 14 N -0.47 -3.39 2.27 -519.99 -1.18 -4.57 16 15 C 0.05 0.47 9.89 83.00 0.82 1.29 16 16 C -0.18 -2.04 5.61 -18.63 -0.10 -2.14 16 17 C -0.05 -0.25 3.05 71.24 0.22 -0.03 16 18 O -0.57 -3.58 12.86 -148.98 -1.92 -5.50 16 19 Si 0.79 -0.29 30.79 68.60 2.11 1.82 16 20 C -0.12 -1.58 6.35 -20.20 -0.13 -1.71 16 21 C -0.08 -0.85 10.05 22.23 0.22 -0.62 16 22 C -0.15 -1.04 9.97 22.03 0.22 -0.82 16 23 C -0.10 -0.59 10.01 22.29 0.22 -0.36 16 24 C -0.14 -1.01 10.00 22.36 0.22 -0.79 16 25 C 0.09 0.99 6.80 39.03 0.27 1.25 16 26 C -0.11 0.79 5.08 30.59 0.16 0.94 16 27 C -0.10 0.48 5.16 30.59 0.16 0.64 16 28 H 0.24 -1.04 7.80 -4.42 -0.03 -1.07 16 29 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 30 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 33 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 34 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.42 -4.98 7.65 -92.71 -0.71 -5.69 16 36 H 0.16 -1.57 8.12 -2.39 -0.02 -1.59 16 37 H 0.15 -1.31 8.14 -2.39 -0.02 -1.33 16 38 H 0.17 0.83 6.30 -2.91 -0.02 0.81 16 39 H 0.08 0.13 7.96 -2.39 -0.02 0.11 16 40 H 0.40 -2.15 8.74 -74.06 -0.65 -2.80 16 41 H -0.28 -1.02 7.11 99.48 0.71 -0.32 16 42 H -0.29 -1.79 7.04 99.48 0.70 -1.09 16 43 H 0.13 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 45 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 46 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 47 H 0.06 -0.35 8.14 -2.39 -0.02 -0.36 16 48 H 0.08 -0.82 7.18 -2.39 -0.02 -0.84 16 49 H 0.07 -0.33 8.14 -2.38 -0.02 -0.34 16 50 H 0.07 -0.25 8.14 -2.39 -0.02 -0.26 16 Total: 0.00 -31.07 413.84 2.18 -28.90 By element: Atomic # 1 Polarization: -14.74 SS G_CDS: -0.38 Total: -15.12 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.04 Total: 2.74 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -3.63 Total: -3.87 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.96 Total: -14.46 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.11 Total: 1.82 kcal Total: -31.07 2.18 -28.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.717 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds