Wall clock time and date at job start Sun Mar 7 2021 09:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46968 * 2 1 4 4 C 1.35907 * 116.99901 * 84.83943 * 3 2 1 5 5 C 1.38726 * 120.05474 * 174.34765 * 4 3 2 6 6 C 1.38143 * 119.94311 * 179.70099 * 5 4 3 7 7 C 1.38269 * 120.05550 * 0.60055 * 6 5 4 8 8 C 1.50696 * 119.94358 * 179.70225 * 7 6 5 9 9 O 1.42908 * 109.47043 * 119.97749 * 8 7 6 10 10 Si 1.86295 * 109.47346 * 359.97438 * 8 7 6 11 11 C 1.38263 * 120.10968 * 359.67590 * 7 6 5 12 12 C 1.38148 * 120.05697 * 0.02562 * 11 7 6 13 13 C 1.50701 * 109.47242 * 240.00026 * 2 1 3 14 14 O 1.21282 * 119.99847 * 119.99454 * 13 2 1 15 15 N 1.34770 * 119.99962 * 300.00163 * 13 2 1 16 16 C 1.46501 * 120.00078 * 179.97438 * 15 13 2 17 17 H 1.08998 * 112.85203 * 23.80301 * 16 15 13 18 18 C 1.53783 * 113.61682 * 154.99689 * 16 15 13 19 19 C 1.53779 * 87.08122 * 139.97972 * 18 16 15 20 20 H 1.09004 * 113.61261 * 89.11598 * 19 18 16 21 21 C 1.50696 * 113.61687 * 219.93373 * 19 18 16 22 22 N 1.30172 * 126.80722 * 265.03134 * 21 19 18 23 23 O 1.20917 * 111.61228 * 179.97438 * 22 21 19 24 24 C 1.34039 * 111.56389 * 359.97438 * 23 22 21 25 25 C 1.35451 * 106.44904 * 359.75480 * 24 23 22 26 26 C 1.53775 * 87.08183 * 334.56820 * 19 18 16 27 27 H 1.08991 * 109.47209 * 60.00223 * 1 2 3 28 28 H 1.09007 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47006 * 299.99658 * 1 2 3 30 30 H 1.08999 * 109.46946 * 119.99991 * 2 1 3 31 31 H 1.08001 * 120.02898 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.97610 * 180.32088 * 6 5 4 33 33 H 1.08998 * 109.47332 * 239.97515 * 8 7 6 34 34 H 0.96702 * 113.99658 * 299.99481 * 9 8 7 35 35 H 1.48498 * 110.00137 * 180.02562 * 10 8 7 36 36 H 1.48500 * 110.00038 * 301.31823 * 10 8 7 37 37 H 1.07995 * 119.97257 * 180.02562 * 11 7 6 38 38 H 1.07996 * 120.02883 * 180.02562 * 12 11 7 39 39 H 0.97002 * 120.00286 * 359.97438 * 15 13 2 40 40 H 1.08998 * 113.61711 * 254.52916 * 18 16 15 41 41 H 1.09003 * 113.61574 * 25.34938 * 18 16 15 42 42 H 1.08000 * 126.78290 * 180.02562 * 24 23 22 43 43 H 1.08000 * 128.01251 * 180.23077 * 25 24 23 44 44 H 1.09002 * 113.61680 * 270.87791 * 26 19 18 45 45 H 1.09010 * 113.61515 * 139.98101 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1093 1.9653 1.2060 5 6 2.6738 3.2295 1.2930 6 6 2.7717 3.8581 2.5192 7 6 2.3189 3.2232 3.6610 8 6 2.4330 3.9086 4.9982 9 8 1.1307 4.0677 5.5646 10 14 3.2212 5.5815 4.7734 11 6 1.7611 1.9609 3.5777 12 6 1.6553 1.3305 2.3530 13 6 2.0324 -0.7104 -1.2305 14 8 2.7296 -0.1209 -2.0288 15 7 1.7068 -2.0007 -1.4438 16 6 2.1947 -2.6911 -2.6402 17 1 3.0998 -2.2418 -3.0487 18 6 2.2845 -4.2176 -2.4770 19 6 1.7497 -4.3239 -3.9149 20 1 2.5326 -4.3210 -4.6733 21 6 0.7526 -5.4374 -4.1074 22 7 1.0014 -6.6420 -4.5335 23 8 -0.0031 -7.3133 -4.5828 24 6 -1.0788 -6.6203 -4.1837 25 6 -0.6373 -5.3828 -3.8543 26 6 1.1026 -2.9468 -3.6923 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0325 3.7237 0.4021 32 1 3.2064 4.8445 2.5868 33 1 3.0478 3.3040 5.6651 34 1 0.5284 4.5966 5.0235 35 1 3.3400 6.2674 6.0852 36 1 4.5633 5.4318 4.1558 37 1 1.4077 1.4672 4.4709 38 1 1.2191 0.3447 2.2885 39 1 1.1494 -2.4722 -0.8051 40 1 3.3041 -4.5853 -2.3621 41 1 1.6033 -4.6173 -1.7257 42 1 -2.0960 -6.9792 -4.1304 43 1 -1.2139 -4.5471 -3.4862 44 1 0.0973 -2.9991 -3.2744 45 1 1.1682 -2.2883 -4.5586 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_10157680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:40 Heat of formation + Delta-G solvation = 21.297602 kcal Electronic energy + Delta-G solvation = -28892.812029 eV Core-core repulsion = 24654.074415 eV Total energy + Delta-G solvation = -4238.737614 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.88619 -41.86383 -41.00885 -39.79444 -38.85971 -37.13878 -35.48290 -34.25446 -32.88782 -32.53711 -32.04931 -31.33312 -27.26453 -26.86257 -26.60570 -25.31670 -24.22093 -23.89039 -22.67897 -22.01568 -21.49038 -20.73595 -19.51000 -18.79409 -18.53636 -18.44156 -18.15136 -17.48827 -16.84537 -16.78794 -16.42876 -16.30826 -15.93031 -15.84095 -15.66870 -15.41134 -15.12520 -14.74083 -14.39453 -14.30052 -14.27540 -13.91535 -13.74640 -13.52893 -13.41298 -13.36960 -13.31588 -12.87222 -12.82073 -12.40040 -12.24463 -12.11410 -12.00490 -11.93648 -11.76710 -11.66989 -10.95733 -10.84571 -10.55289 -10.41377 -10.19228 -10.04485 -9.21450 -4.99836 0.24586 0.32562 0.63345 1.28533 1.33620 1.37639 1.50345 1.63246 1.96440 2.44785 2.51654 2.65749 3.12338 3.29426 3.45163 3.52026 3.56802 3.64743 3.68133 3.72882 3.83320 3.87211 3.87691 3.93339 4.00244 4.27767 4.30638 4.35599 4.46573 4.53247 4.56094 4.58671 4.65180 4.66379 4.69257 4.73660 4.76193 4.87994 4.95286 4.99475 5.09896 5.12618 5.18159 5.19288 5.29013 5.44218 5.48456 5.67964 6.25786 6.43798 6.79939 7.07502 7.36869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 O -0.312 6.312 4 C 0.120 3.880 5 C -0.160 4.160 6 C -0.077 4.077 7 C -0.161 4.161 8 C -0.063 4.063 9 O -0.555 6.555 10 Si 0.767 3.233 11 C -0.057 4.057 12 C -0.207 4.207 13 C 0.518 3.482 14 O -0.569 6.569 15 N -0.695 5.695 16 C 0.124 3.876 17 H 0.099 0.901 18 C -0.119 4.119 19 C -0.039 4.039 20 H 0.101 0.899 21 C 0.020 3.980 22 N -0.406 5.406 23 O 0.077 5.923 24 C -0.047 4.047 25 C -0.238 4.238 26 C -0.128 4.128 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.395 0.605 35 H -0.300 1.300 36 H -0.290 1.290 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.421 0.579 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.256 0.744 43 H 0.198 0.802 44 H 0.112 0.888 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -1.725 2.554 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 O -0.225 6.225 4 C 0.075 3.925 5 C -0.178 4.178 6 C -0.095 4.095 7 C -0.162 4.162 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.674 3.326 11 C -0.075 4.075 12 C -0.226 4.226 13 C 0.304 3.696 14 O -0.447 6.447 15 N -0.349 5.349 16 C 0.019 3.981 17 H 0.117 0.883 18 C -0.158 4.158 19 C -0.059 4.059 20 H 0.119 0.881 21 C -0.139 4.139 22 N -0.113 5.113 23 O 0.014 5.986 24 C -0.128 4.128 25 C -0.259 4.259 26 C -0.167 4.167 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.245 0.755 35 H -0.228 1.228 36 H -0.217 1.217 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.259 0.741 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.272 0.728 43 H 0.215 0.785 44 H 0.131 0.869 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.648 -1.737 2.058 6.257 hybrid contribution -0.398 -0.368 0.427 0.690 sum -6.046 -2.105 2.486 6.868 Atomic orbital electron populations 1.22375 0.90197 1.05815 1.04501 1.22440 0.97398 0.82158 0.97658 1.86189 1.81500 1.26960 1.27883 1.19256 0.95832 0.93137 0.84278 1.20587 1.03811 0.94197 0.99236 1.20974 0.97868 0.99618 0.91021 1.20335 1.03692 0.96765 0.95381 1.24984 0.90385 1.09046 0.92971 1.86458 1.22882 1.76846 1.50113 0.93794 0.80684 0.77772 0.80312 1.20981 0.95394 0.93628 0.97488 1.21525 1.06578 1.02591 0.91863 1.20570 0.79517 0.82669 0.86872 1.90756 1.38960 1.66920 1.48039 1.45662 1.53226 1.10446 1.25527 1.22383 0.98193 0.91773 0.85764 0.88285 1.23342 1.03040 0.93821 0.95607 1.20683 0.95735 0.90544 0.98936 0.88072 1.23742 0.95938 0.93361 1.00835 1.73878 1.09199 1.07044 1.21176 1.84819 1.12445 1.37832 1.63507 1.26910 0.95552 0.91993 0.98370 1.23056 0.93313 1.00675 1.08860 1.23517 1.00011 0.93875 0.99332 0.91857 0.87061 0.89654 0.85882 0.84741 0.83569 0.87524 0.75491 1.22769 1.21685 0.84307 0.82771 0.74062 0.90146 0.87453 0.72810 0.78515 0.86929 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.37 9.07 71.98 0.65 2.02 16 2 C 0.06 -0.14 2.65 29.85 0.08 -0.06 16 3 O -0.31 -1.77 9.33 -73.46 -0.69 -2.46 16 4 C 0.12 0.38 6.60 22.50 0.15 0.53 16 5 C -0.16 -0.49 9.99 22.36 0.22 -0.26 16 6 C -0.08 0.00 8.66 22.25 0.19 0.19 16 7 C -0.16 0.05 5.39 -19.85 -0.11 -0.06 16 8 C -0.06 0.07 2.82 71.23 0.20 0.27 16 9 O -0.55 0.49 12.77 -148.98 -1.90 -1.42 16 10 Si 0.77 -1.35 29.78 68.60 2.04 0.70 16 11 C -0.06 0.05 9.60 22.25 0.21 0.26 16 12 C -0.21 0.28 8.24 22.37 0.18 0.46 16 13 C 0.52 1.16 7.23 87.66 0.63 1.80 16 14 O -0.57 -7.77 16.10 16.00 0.26 -7.51 16 15 N -0.70 3.81 5.25 -440.04 -2.31 1.50 16 16 C 0.12 -0.39 4.24 45.52 0.19 -0.20 16 17 H 0.10 0.21 7.46 -2.39 -0.02 0.19 16 18 C -0.12 0.60 7.38 31.12 0.23 0.83 16 19 C -0.04 0.08 4.29 -11.02 -0.05 0.03 16 20 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 21 C 0.02 0.02 6.70 43.58 0.29 0.31 16 22 N -0.41 -2.66 12.07 -49.55 -0.60 -3.26 16 23 O 0.08 0.24 11.20 71.65 0.80 1.04 16 24 C -0.05 0.26 12.30 67.18 0.83 1.09 16 25 C -0.24 1.21 10.28 22.40 0.23 1.44 16 26 C -0.13 0.61 7.27 31.12 0.23 0.83 16 27 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.11 -1.64 7.57 -2.38 -0.02 -1.66 16 29 H 0.08 -0.73 6.90 -2.39 -0.02 -0.74 16 30 H 0.12 -0.91 6.32 -2.39 -0.02 -0.92 16 31 H 0.13 0.35 8.06 -2.91 -0.02 0.32 16 32 H 0.15 -0.55 4.87 -2.91 -0.01 -0.57 16 33 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 34 H 0.40 -3.43 8.70 -74.06 -0.64 -4.08 16 35 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 36 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 37 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 38 H 0.15 -1.09 5.43 -2.91 -0.02 -1.11 16 39 H 0.42 -5.49 8.15 -92.71 -0.76 -6.24 16 40 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 41 H 0.11 -0.88 8.07 -2.39 -0.02 -0.90 16 42 H 0.26 -3.85 8.06 -2.91 -0.02 -3.87 16 43 H 0.20 -2.26 7.13 -2.91 -0.02 -2.28 16 44 H 0.11 -1.00 6.63 -2.39 -0.02 -1.02 16 45 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 Total: 0.00 -29.06 375.35 1.67 -27.39 By element: Atomic # 1 Polarization: -25.15 SS G_CDS: -0.31 Total: -25.46 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.37 Total: 9.48 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -2.91 Total: -1.76 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.53 Total: -10.34 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: 2.04 Total: 0.70 kcal Total: -29.06 1.67 -27.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_10157680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.687 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds