Wall clock time and date at job start Sun Mar 7 2021 09:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46847 * 2 1 4 4 C 1.50693 * 109.47730 * 239.99913 * 2 1 3 5 5 C 1.34456 * 126.48439 * 105.01683 * 4 2 1 6 6 N 1.36564 * 109.98634 * 179.97438 * 5 4 2 7 7 C 1.37828 * 109.86191 * 0.02562 * 6 5 4 8 8 C 1.38639 * 133.38106 * 179.97438 * 7 6 5 9 9 C 1.39319 * 119.66715 * 179.97438 * 8 7 6 10 10 C 1.47578 * 119.83447 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99625 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00479 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00099 * 180.02562 * 12 10 9 14 14 H 1.08994 * 112.91109 * 23.75176 * 13 12 10 15 15 C 1.53787 * 113.61210 * 155.00440 * 13 12 10 16 16 C 1.53779 * 87.07963 * 139.97940 * 15 13 12 17 17 H 1.09001 * 113.61377 * 89.20020 * 16 15 13 18 18 C 1.50701 * 113.61123 * 220.01652 * 16 15 13 19 19 N 1.30177 * 126.80081 * 265.02257 * 18 16 15 20 20 O 1.20924 * 111.60476 * 179.97438 * 19 18 16 21 21 C 1.34039 * 111.56662 * 0.02562 * 20 19 18 22 22 C 1.35451 * 106.44693 * 359.74243 * 21 20 19 23 23 C 1.53779 * 87.08402 * 334.56577 * 16 15 13 24 24 C 1.40201 * 120.33659 * 0.25777 * 9 8 7 25 25 C 1.36232 * 120.37550 * 359.45567 * 24 9 8 26 26 C 1.39883 * 119.95845 * 0.56305 * 25 24 9 27 27 H 0.96698 * 113.99867 * 60.00578 * 1 2 3 28 28 H 1.09001 * 109.47357 * 119.99294 * 2 1 3 29 29 H 1.48502 * 110.00054 * 59.99742 * 3 2 1 30 30 H 1.48500 * 110.00089 * 181.31647 * 3 2 1 31 31 H 1.08001 * 125.00359 * 359.95272 * 5 4 2 32 32 H 0.97001 * 125.07031 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.16462 * 359.97438 * 8 7 6 34 34 H 0.97002 * 119.99411 * 0.02562 * 12 10 9 35 35 H 1.08997 * 113.61028 * 254.52900 * 15 13 12 36 36 H 1.09000 * 113.61529 * 25.43039 * 15 13 12 37 37 H 1.07999 * 126.77890 * 180.02562 * 21 20 19 38 38 H 1.07996 * 128.01068 * 180.23949 * 22 21 20 39 39 H 1.09002 * 113.61557 * 270.88569 * 23 16 15 40 40 H 1.09004 * 113.61501 * 139.97990 * 23 16 15 41 41 H 1.07993 * 119.81424 * 179.72540 * 24 9 8 42 42 H 1.08004 * 120.02096 * 180.23570 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 2.4621 -0.1363 -2.3243 6 7 2.8045 -1.0947 -3.2349 7 6 2.4952 -2.3432 -2.7394 8 6 2.6314 -3.6278 -3.2425 9 6 2.2134 -4.7154 -2.4787 10 6 2.3561 -6.0845 -3.0108 11 8 2.8379 -6.2611 -4.1132 12 7 1.9535 -7.1392 -2.2746 13 6 2.0957 -8.4982 -2.8027 14 1 2.8738 -8.5792 -3.5617 15 6 2.1856 -9.5772 -1.7106 16 6 1.2929 -10.4493 -2.6090 17 1 1.8516 -11.0648 -3.3141 18 6 0.2506 -11.2290 -1.8496 19 7 0.3478 -12.4575 -1.4300 20 8 -0.6527 -12.8102 -0.8496 21 6 -1.5691 -11.8328 -0.8087 22 6 -1.0243 -10.7695 -1.4468 23 6 0.7614 -9.1408 -3.2173 24 6 1.6525 -4.5156 -1.2094 25 6 1.5203 -3.2569 -0.7051 26 6 1.9348 -2.1548 -1.4602 27 1 -0.3933 0.4416 -0.7651 28 1 1.7923 -0.5137 0.8900 29 1 1.5613 2.4679 1.2085 30 1 3.5345 1.7704 -0.0321 31 1 2.5972 0.9263 -2.4626 32 1 3.2055 -0.9226 -4.1011 33 1 3.0593 -3.7847 -4.2217 34 1 1.5695 -6.9982 -1.3951 35 1 3.1904 -9.9769 -1.5735 36 1 1.7119 -9.2891 -0.7721 37 1 -2.5468 -11.8818 -0.3526 38 1 -1.4631 -9.7965 -1.6116 39 1 -0.1016 -8.7334 -2.6908 40 1 0.6164 -9.1882 -4.2966 41 1 1.3273 -5.3644 -0.6264 42 1 1.0909 -3.1098 0.2749 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_12335838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:47:12 Heat of formation + Delta-G solvation = 87.136427 kcal Electronic energy + Delta-G solvation = -27719.878954 eV Core-core repulsion = 23636.337945 eV Total energy + Delta-G solvation = -4083.541009 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.88977 -42.44876 -41.28332 -39.68421 -37.85039 -37.42296 -35.40059 -33.92842 -33.22629 -32.57303 -30.71794 -30.60191 -27.15085 -26.85247 -26.39755 -24.74107 -23.89183 -23.63837 -22.21155 -21.49655 -20.88954 -20.63515 -19.36551 -18.80946 -18.48602 -18.27081 -17.68431 -17.32022 -16.94302 -16.43738 -16.26754 -15.97209 -15.94460 -15.53508 -15.40552 -15.10346 -14.89289 -14.74147 -14.38935 -14.32067 -14.00945 -13.87023 -13.67620 -13.41157 -13.06650 -12.82693 -12.65028 -12.37732 -12.27700 -12.27380 -11.94038 -11.91996 -11.74585 -11.11323 -10.87157 -10.77520 -10.55774 -10.28415 -10.15909 -9.35617 -8.77832 -4.96547 -0.31945 0.37653 0.62570 1.28348 1.39671 1.42904 1.72152 1.89607 1.91968 2.06426 2.25800 2.48533 2.86407 3.13655 3.30126 3.52573 3.59881 3.64082 3.69423 3.75891 3.87562 3.90691 3.93807 4.00374 4.12733 4.29904 4.31496 4.45755 4.50085 4.52705 4.59351 4.62503 4.65385 4.73502 4.75753 4.79254 4.89276 4.95251 4.96913 5.12598 5.18300 5.22132 5.41804 5.45225 5.54339 5.62675 5.98971 6.45751 6.55678 6.91859 7.12388 7.35986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.038 4.038 3 Si 0.793 3.207 4 C -0.235 4.235 5 C 0.096 3.904 6 N -0.577 5.577 7 C 0.066 3.934 8 C -0.066 4.066 9 C -0.138 4.138 10 C 0.563 3.437 11 O -0.581 6.581 12 N -0.700 5.700 13 C 0.123 3.877 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.037 4.037 17 H 0.105 0.895 18 C 0.020 3.980 19 N -0.405 5.405 20 O 0.079 5.921 21 C -0.046 4.046 22 C -0.240 4.240 23 C -0.130 4.130 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.082 4.082 27 H 0.393 0.607 28 H 0.096 0.904 29 H -0.306 1.306 30 H -0.286 1.286 31 H 0.219 0.781 32 H 0.435 0.565 33 H 0.129 0.871 34 H 0.415 0.585 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.195 0.805 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.152 0.848 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 6.345 0.583 7.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.148 4.148 3 Si 0.699 3.301 4 C -0.242 4.242 5 C -0.033 4.033 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.088 4.088 9 C -0.142 4.142 10 C 0.353 3.647 11 O -0.463 6.463 12 N -0.351 5.351 13 C 0.018 3.982 14 H 0.122 0.878 15 C -0.160 4.160 16 C -0.057 4.057 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.112 5.112 20 O 0.015 5.985 21 C -0.127 4.127 22 C -0.261 4.261 23 C -0.169 4.169 24 C -0.126 4.126 25 C -0.105 4.105 26 C -0.087 4.087 27 H 0.243 0.757 28 H 0.114 0.886 29 H -0.234 1.234 30 H -0.213 1.213 31 H 0.235 0.765 32 H 0.275 0.725 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.212 0.788 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.145 5.551 0.580 5.980 hybrid contribution -0.246 -0.123 0.083 0.288 sum -2.391 5.428 0.662 5.968 Atomic orbital electron populations 1.86459 1.17841 1.82303 1.50270 1.24518 0.84643 1.10096 0.95536 0.94072 0.77081 0.73669 0.85256 1.20850 1.12579 0.91530 0.99289 1.22360 0.97133 0.95783 0.88041 1.41823 1.54054 1.03265 1.18920 1.18122 1.03892 0.86907 0.95190 1.20147 0.99749 0.88833 1.00044 1.19458 1.06234 0.91774 0.96731 1.18398 0.76665 0.85455 0.84217 1.90767 1.46680 1.86782 1.22028 1.45731 1.63121 1.05079 1.21167 1.22409 0.98697 0.79644 0.97432 0.87832 1.23345 1.00709 0.94055 0.97889 1.20689 0.94048 0.93745 0.97201 0.87722 1.23748 0.97608 0.91150 1.01369 1.73876 1.07280 1.16655 1.13345 1.84816 1.19044 1.38623 1.55999 1.26895 0.98135 0.86689 1.01002 1.23049 0.94550 1.03405 1.05107 1.23517 0.98258 0.92993 1.02094 1.20888 0.99567 0.98062 0.94077 1.20402 0.99245 0.90804 1.00080 1.19587 1.00935 0.94304 0.93888 0.75705 0.88629 1.23434 1.21277 0.76506 0.72477 0.85335 0.74581 0.89958 0.87903 0.72773 0.78786 0.87442 0.90572 0.83050 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.41 12.88 -148.98 -1.92 -1.51 16 2 C -0.04 0.07 3.06 71.23 0.22 0.29 16 3 Si 0.79 -4.17 30.75 68.60 2.11 -2.06 16 4 C -0.24 0.27 5.57 -18.65 -0.10 0.16 16 5 C 0.10 -0.60 10.43 83.09 0.87 0.27 16 6 N -0.58 2.34 6.07 -187.72 -1.14 1.20 16 7 C 0.07 0.17 7.26 38.95 0.28 0.45 16 8 C -0.07 -0.33 9.61 22.63 0.22 -0.11 16 9 C -0.14 -0.58 5.87 -20.08 -0.12 -0.70 16 10 C 0.56 3.53 7.76 86.71 0.67 4.20 16 11 O -0.58 -8.29 15.91 -4.02 -0.06 -8.36 16 12 N -0.70 0.46 5.30 -443.15 -2.35 -1.89 16 13 C 0.12 -0.05 4.24 45.52 0.19 0.15 16 14 H 0.10 0.39 7.46 -2.39 -0.02 0.37 16 15 C -0.12 0.30 7.38 31.12 0.23 0.53 16 16 C -0.04 0.00 4.29 -11.01 -0.05 -0.04 16 17 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 18 C 0.02 0.05 6.70 43.58 0.29 0.35 16 19 N -0.41 -3.23 12.07 -49.55 -0.60 -3.82 16 20 O 0.08 0.35 11.20 71.64 0.80 1.15 16 21 C -0.05 0.18 12.30 67.18 0.83 1.00 16 22 C -0.24 0.68 10.28 22.40 0.23 0.91 16 23 C -0.13 0.28 7.27 31.12 0.23 0.51 16 24 C -0.11 0.00 9.46 22.28 0.21 0.21 16 25 C -0.09 -0.16 10.03 22.20 0.22 0.06 16 26 C -0.08 -0.26 6.35 -20.14 -0.13 -0.39 16 27 H 0.39 -3.56 8.70 -74.06 -0.64 -4.21 16 28 H 0.10 0.06 7.96 -2.39 -0.02 0.04 16 29 H -0.31 -1.05 7.11 99.48 0.71 -0.34 16 30 H -0.29 0.08 7.11 99.48 0.71 0.79 16 31 H 0.22 -3.31 6.35 -2.91 -0.02 -3.33 16 32 H 0.43 -4.18 8.96 -92.71 -0.83 -5.01 16 33 H 0.13 0.70 7.62 -2.91 -0.02 0.68 16 34 H 0.42 -2.70 6.72 -92.71 -0.62 -3.32 16 35 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.10 -0.49 8.07 -2.39 -0.02 -0.51 16 37 H 0.26 -3.44 8.06 -2.91 -0.02 -3.46 16 38 H 0.20 -1.67 7.12 -2.91 -0.02 -1.69 16 39 H 0.11 -0.57 6.62 -2.39 -0.02 -0.59 16 40 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.15 -1.01 6.36 -2.91 -0.02 -1.03 16 42 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -29.42 358.74 0.19 -29.22 By element: Atomic # 1 Polarization: -20.84 SS G_CDS: -0.94 Total: -21.78 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.29 Total: 7.83 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -4.09 Total: -4.51 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.18 Total: -8.71 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.11 Total: -2.06 kcal Total: -29.42 0.19 -29.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_12335838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.360 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds