Wall clock time and date at job start Sun Mar 7 2021 09:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86294 * 109.47229 * 2 1 4 4 C 1.50700 * 109.46742 * 239.99910 * 2 1 3 5 5 C 1.35090 * 126.07502 * 105.23319 * 4 2 1 6 6 N 1.35037 * 107.98313 * 180.12292 * 5 4 2 7 7 C 1.46493 * 125.93273 * 179.83207 * 6 5 4 8 8 C 1.50702 * 109.46957 * 124.71925 * 7 6 5 9 9 O 1.21284 * 120.00143 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00445 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00432 * 179.72551 * 10 8 7 12 12 H 1.08995 * 112.84810 * 24.07219 * 11 10 8 13 13 C 1.53777 * 113.61729 * 155.27269 * 11 10 8 14 14 C 1.53777 * 87.08274 * 139.97628 * 13 11 10 15 15 H 1.09004 * 113.61123 * 89.11665 * 14 13 11 16 16 C 1.50694 * 113.61693 * 219.93081 * 14 13 11 17 17 N 1.30177 * 126.80661 * 264.69141 * 16 14 13 18 18 O 1.20921 * 111.60516 * 179.79599 * 17 16 14 19 19 C 1.34040 * 111.56948 * 0.48582 * 18 17 16 20 20 C 1.35459 * 106.44153 * 359.70853 * 19 18 17 21 21 C 1.53782 * 87.08328 * 334.57008 * 14 13 11 22 22 N 1.40072 * 108.13425 * 359.57641 * 6 5 4 23 23 C 1.31615 * 108.11094 * 0.26156 * 22 6 5 24 24 C 1.48421 * 126.03944 * 179.97438 * 23 22 6 25 25 C 1.39327 * 120.12315 * 136.98069 * 24 23 22 26 26 C 1.38022 * 119.87451 * 179.71746 * 25 24 23 27 27 C 1.38312 * 120.12392 * 0.55214 * 26 25 24 28 28 C 1.38325 * 120.24145 * 359.72126 * 27 26 25 29 29 C 1.38023 * 120.11925 * 359.97438 * 28 27 26 30 30 H 0.96694 * 114.00211 * 59.99711 * 1 2 3 31 31 H 1.08994 * 109.47410 * 120.00385 * 2 1 3 32 32 H 1.48506 * 110.00040 * 59.99987 * 3 2 1 33 33 H 1.48493 * 110.00240 * 181.32047 * 3 2 1 34 34 H 1.08007 * 126.00906 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47324 * 4.72162 * 7 6 5 36 36 H 1.08999 * 109.47463 * 244.71470 * 7 6 5 37 37 H 0.97010 * 119.99519 * 359.97438 * 10 8 7 38 38 H 1.09003 * 113.61900 * 254.53347 * 13 11 10 39 39 H 1.09001 * 113.61401 * 25.43004 * 13 11 10 40 40 H 1.07997 * 126.78301 * 179.72787 * 19 18 17 41 41 H 1.07995 * 128.00408 * 180.02562 * 20 19 18 42 42 H 1.08995 * 113.61078 * 270.88416 * 21 14 13 43 43 H 1.08994 * 113.61370 * 139.97786 * 21 14 13 44 44 H 1.07997 * 120.05868 * 359.96897 * 25 24 23 45 45 H 1.08011 * 119.93510 * 180.27068 * 26 25 24 46 46 H 1.07996 * 119.88140 * 179.69414 * 27 26 25 47 47 H 1.07999 * 119.93752 * 180.02562 * 28 27 26 48 48 H 1.07995 * 120.06177 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4669 -0.1253 -2.3239 6 7 2.7883 -1.0990 -3.2026 7 6 3.3925 -0.9008 -4.5224 8 6 4.6595 -1.7107 -4.6214 9 8 5.0218 -2.3873 -3.6823 10 7 5.3902 -1.6834 -5.7537 11 6 6.6250 -2.4659 -5.8478 12 1 6.6411 -3.3150 -5.1645 13 6 7.0162 -2.8284 -7.2901 14 6 8.4712 -2.5399 -6.8846 15 1 8.9934 -3.4089 -6.4844 16 6 9.2621 -1.8193 -7.9458 17 7 10.0414 -2.3583 -8.8384 18 8 10.5382 -1.5232 -9.5582 19 6 10.1491 -0.2861 -9.2194 20 6 9.3096 -0.4235 -8.1652 21 6 7.9018 -1.6101 -5.8001 22 7 2.4490 -2.3318 -2.6307 23 6 1.9321 -2.1029 -1.4421 24 6 1.4370 -3.1306 -0.4926 25 6 1.7386 -3.0323 0.8641 26 6 1.2706 -3.9877 1.7434 27 6 0.5132 -5.0474 1.2784 28 6 0.2155 -5.1530 -0.0683 29 6 0.6731 -4.1999 -0.9555 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5139 0.8899 32 1 1.5615 2.4679 1.2085 33 1 3.5346 1.7702 -0.0322 34 1 2.6104 0.9351 -2.4707 35 1 3.6246 0.1552 -4.6609 36 1 2.6938 -1.2236 -5.2941 37 1 5.1002 -1.1425 -6.5050 38 1 6.8322 -3.8726 -7.5432 39 1 6.6252 -2.1360 -8.0357 40 1 10.4459 0.6378 -9.6934 41 1 8.7952 0.3534 -7.6192 42 1 7.7529 -0.5847 -6.1383 43 1 8.4328 -1.6708 -4.8502 44 1 2.3341 -2.2078 1.2275 45 1 1.5002 -3.9100 2.7960 46 1 0.1532 -5.7954 1.9692 47 1 -0.3766 -5.9823 -0.4260 48 1 0.4398 -4.2830 -2.0067 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_12622748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:48:00 Heat of formation + Delta-G solvation = 139.514712 kcal Electronic energy + Delta-G solvation = -33380.029916 eV Core-core repulsion = 28794.032911 eV Total energy + Delta-G solvation = -4585.997006 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.152 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -45.90051 -42.47998 -41.20629 -39.90065 -39.47074 -37.64948 -35.39055 -34.79529 -33.88860 -32.58339 -32.30877 -31.95514 -31.41504 -28.94965 -26.91419 -26.84148 -25.91557 -24.33656 -23.90352 -23.48382 -22.45702 -21.68633 -21.52427 -21.08942 -20.69537 -18.86403 -18.66743 -18.50889 -18.32143 -17.72318 -17.42506 -17.05097 -16.56213 -16.44150 -16.27435 -16.09513 -15.79509 -15.65299 -15.41783 -15.29961 -14.94785 -14.41890 -14.38559 -14.33683 -14.19134 -13.96366 -13.87606 -13.76640 -13.61769 -13.43824 -13.20980 -12.83503 -12.48194 -12.42380 -12.38145 -12.15890 -11.96387 -11.87054 -11.78917 -11.71130 -11.24942 -10.89484 -10.61824 -10.56110 -10.21653 -10.14430 -9.91896 -9.76744 -9.31528 -5.01125 0.08976 0.42225 0.62429 0.82633 1.27673 1.32096 1.42359 1.47766 1.63935 1.76785 2.04569 2.09018 2.48563 2.85186 3.11061 3.28470 3.35873 3.50017 3.58820 3.65655 3.66720 3.75727 3.85199 3.94796 3.97658 3.99448 4.03774 4.17212 4.18860 4.22858 4.29573 4.43944 4.45653 4.50514 4.53411 4.56177 4.63712 4.72405 4.74863 4.77734 4.83925 4.86772 4.92899 4.95708 5.06311 5.11730 5.17840 5.27513 5.46439 5.52189 5.53287 5.58514 5.94839 5.99706 6.47379 6.60613 6.91846 7.17350 7.36056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.045 4.045 3 Si 0.804 3.196 4 C -0.271 4.271 5 C 0.081 3.919 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.495 3.505 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.126 3.874 12 H 0.089 0.911 13 C -0.118 4.118 14 C -0.041 4.041 15 H 0.096 0.904 16 C 0.019 3.981 17 N -0.408 5.408 18 O 0.078 5.922 19 C -0.047 4.047 20 C -0.237 4.237 21 C -0.126 4.126 22 N -0.294 5.294 23 C 0.106 3.894 24 C -0.025 4.025 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.125 4.125 29 C -0.110 4.110 30 H 0.391 0.609 31 H 0.091 0.909 32 H -0.301 1.301 33 H -0.285 1.285 34 H 0.231 0.769 35 H 0.185 0.815 36 H 0.144 0.856 37 H 0.423 0.577 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.257 0.743 41 H 0.199 0.801 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 10.654 -6.922 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.154 4.154 3 Si 0.709 3.291 4 C -0.282 4.282 5 C -0.065 4.065 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.281 3.719 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.021 3.979 12 H 0.108 0.892 13 C -0.157 4.157 14 C -0.061 4.061 15 H 0.114 0.886 16 C -0.139 4.139 17 N -0.115 5.115 18 O 0.014 5.986 19 C -0.128 4.128 20 C -0.258 4.258 21 C -0.165 4.165 22 N -0.116 5.116 23 C -0.059 4.059 24 C -0.027 4.027 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.129 4.129 30 H 0.241 0.759 31 H 0.108 0.892 32 H -0.229 1.229 33 H -0.212 1.212 34 H 0.247 0.753 35 H 0.203 0.797 36 H 0.162 0.838 37 H 0.262 0.738 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.273 0.727 41 H 0.217 0.783 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.140 0.860 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.162 0.838 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.259 8.337 -6.655 10.671 hybrid contribution -0.169 0.258 0.890 0.942 sum -0.428 8.595 -5.765 10.358 Atomic orbital electron populations 1.86480 1.17750 1.82322 1.49991 1.24757 0.84830 1.10792 0.95052 0.94095 0.76846 0.73038 0.85155 1.20652 1.14670 0.92360 1.00527 1.22905 0.97804 0.96980 0.88768 1.48167 1.47417 1.03520 1.14971 1.22054 0.92546 1.04996 0.81756 1.21229 0.85786 0.82167 0.82762 1.90834 1.71514 1.42845 1.39419 1.45683 1.24136 1.48853 1.16562 1.22239 0.83233 0.94913 0.97551 0.89244 1.23327 0.92809 1.03415 0.96174 1.20677 0.93831 0.98658 0.92896 0.88571 1.23732 0.98649 0.93575 0.97986 1.73887 1.13551 1.16976 1.07039 1.84819 1.54158 1.14232 1.45359 1.26933 0.97540 0.90415 0.97934 1.23056 1.05311 0.95782 1.01620 1.23495 0.95134 0.99911 0.97950 1.77702 1.19550 1.04292 1.10040 1.20810 0.98553 0.93722 0.92846 1.17996 0.98910 0.93817 0.92002 1.21241 1.00002 0.99538 0.92127 1.21377 0.98008 0.94404 1.00533 1.21565 0.97742 0.98395 0.96027 1.21389 1.00114 0.99134 0.93638 1.21281 0.97690 0.93915 1.00017 0.75920 0.89169 1.22926 1.21170 0.75335 0.79741 0.83830 0.73778 0.90607 0.87191 0.72722 0.78347 0.86605 0.91348 0.85959 0.83788 0.83497 0.83816 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.76 12.88 -148.98 -1.92 -3.68 16 2 C -0.04 -0.10 2.52 71.24 0.18 0.08 16 3 Si 0.80 -2.77 30.74 68.60 2.11 -0.66 16 4 C -0.27 -1.12 5.35 -19.95 -0.11 -1.22 16 5 C 0.08 -0.20 9.96 83.47 0.83 0.63 16 6 N -0.36 -0.52 3.40 -351.91 -1.20 -1.71 16 7 C 0.11 -0.95 6.99 85.64 0.60 -0.35 16 8 C 0.49 -0.28 7.86 87.66 0.69 0.41 16 9 O -0.57 -7.39 15.30 -3.04 -0.05 -7.44 16 10 N -0.70 5.15 5.35 -440.05 -2.36 2.79 16 11 C 0.13 -0.38 4.24 45.52 0.19 -0.19 16 12 H 0.09 0.35 7.47 -2.39 -0.02 0.33 16 13 C -0.12 0.55 7.38 31.12 0.23 0.78 16 14 C -0.04 0.06 4.29 -11.02 -0.05 0.01 16 15 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 16 C 0.02 0.02 6.70 43.58 0.29 0.31 16 17 N -0.41 -2.80 12.07 -49.56 -0.60 -3.40 16 18 O 0.08 0.24 11.20 71.63 0.80 1.05 16 19 C -0.05 0.27 12.30 67.18 0.83 1.10 16 20 C -0.24 1.27 10.28 22.40 0.23 1.50 16 21 C -0.13 0.59 7.27 31.12 0.23 0.82 16 22 N -0.29 -3.46 11.67 -48.16 -0.56 -4.02 16 23 C 0.11 1.18 6.66 42.53 0.28 1.47 16 24 C -0.03 -0.31 5.74 -20.04 -0.11 -0.42 16 25 C -0.11 -1.09 8.88 22.48 0.20 -0.89 16 26 C -0.13 -0.83 10.03 22.24 0.22 -0.61 16 27 C -0.12 -0.64 10.04 22.31 0.22 -0.42 16 28 C -0.12 -0.85 10.03 22.24 0.22 -0.62 16 29 C -0.11 -1.16 9.78 22.48 0.22 -0.94 16 30 H 0.39 -2.31 8.70 -74.06 -0.64 -2.95 16 31 H 0.09 0.52 5.56 -2.39 -0.01 0.50 16 32 H -0.30 -1.35 7.11 99.48 0.71 -0.64 16 33 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 34 H 0.23 -3.24 6.40 -2.91 -0.02 -3.26 16 35 H 0.19 -3.73 8.07 -2.39 -0.02 -3.75 16 36 H 0.14 -1.91 8.14 -2.39 -0.02 -1.93 16 37 H 0.42 -6.71 8.73 -92.70 -0.81 -7.52 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.11 -0.91 8.07 -2.39 -0.02 -0.93 16 40 H 0.26 -3.96 8.06 -2.91 -0.02 -3.98 16 41 H 0.20 -2.42 7.13 -2.91 -0.02 -2.44 16 42 H 0.12 -1.12 6.63 -2.39 -0.02 -1.13 16 43 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.12 1.01 6.23 -2.91 -0.02 0.99 16 45 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 46 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 47 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 48 H 0.12 1.20 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -41.89 408.97 1.25 -40.63 By element: Atomic # 1 Polarization: -24.62 SS G_CDS: -0.38 Total: -24.99 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.40 Total: 1.43 kcal Atomic # 7 Polarization: -1.62 SS G_CDS: -4.71 Total: -6.34 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.11 Total: -0.66 kcal Total: -41.89 1.25 -40.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_12622748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.149 kcal (2) G-P(sol) polarization free energy of solvation -41.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds