Wall clock time and date at job start Sun Mar 7 2021 09:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39283 * 121.02947 * 2 1 4 4 C 1.46506 * 134.19720 * 359.91586 * 3 2 1 5 5 C 1.50699 * 126.59799 * 0.31014 * 4 3 2 6 6 O 1.42897 * 109.47209 * 75.00067 * 5 4 3 7 7 Si 1.86303 * 109.46833 * 195.00248 * 5 4 3 8 8 C 1.34184 * 106.79827 * 180.32943 * 4 3 2 9 9 N 1.36943 * 109.95638 * 359.97438 * 8 4 3 10 10 C 1.37163 * 110.11433 * 359.97438 * 9 8 4 11 11 N 1.32815 * 132.97057 * 180.02562 * 10 9 8 12 12 C 1.31310 * 121.89355 * 179.97438 * 11 10 9 13 13 C 1.39745 * 121.03363 * 179.73772 * 2 1 3 14 14 C 1.47664 * 120.45517 * 359.97438 * 13 2 1 15 15 O 1.21573 * 120.00042 * 353.76730 * 14 13 2 16 16 N 1.34783 * 120.00044 * 173.76463 * 14 13 2 17 17 C 1.46498 * 119.99826 * 179.72823 * 16 14 13 18 18 H 1.09004 * 112.85204 * 24.07228 * 17 16 14 19 19 C 1.53778 * 113.61404 * 155.27603 * 17 16 14 20 20 C 1.53779 * 87.08094 * 139.97750 * 19 17 16 21 21 H 1.09004 * 113.61244 * 89.19890 * 20 19 17 22 22 C 1.50703 * 113.61521 * 220.01865 * 20 19 17 23 23 N 1.30181 * 126.79883 * 264.68815 * 22 20 19 24 24 O 1.20916 * 111.60074 * 179.79493 * 23 22 20 25 25 C 1.34041 * 111.56978 * 0.48622 * 24 23 22 26 26 C 1.35455 * 106.44392 * 359.70736 * 25 24 23 27 27 C 1.53774 * 87.08141 * 334.56789 * 20 19 17 28 28 H 1.09003 * 109.47074 * 263.98104 * 1 2 3 29 29 H 1.08994 * 109.47353 * 23.97783 * 1 2 3 30 30 H 1.08996 * 109.47213 * 143.98165 * 1 2 3 31 31 H 1.08999 * 109.46770 * 314.99669 * 5 4 3 32 32 H 0.96701 * 113.99751 * 60.00279 * 6 5 4 33 33 H 1.48496 * 109.99639 * 179.97438 * 7 5 4 34 34 H 1.48499 * 110.00065 * 301.31661 * 7 5 4 35 35 H 1.08004 * 125.01875 * 179.97438 * 8 4 3 36 36 H 0.97001 * 124.94288 * 180.02562 * 9 8 4 37 37 H 1.07997 * 119.31128 * 180.02562 * 12 11 10 38 38 H 0.96999 * 119.99956 * 359.97438 * 16 14 13 39 39 H 1.08998 * 113.61631 * 254.52469 * 19 17 16 40 40 H 1.09001 * 113.61595 * 25.42840 * 19 17 16 41 41 H 1.07995 * 126.78167 * 179.73179 * 25 24 23 42 42 H 1.08000 * 128.00519 * 180.02562 * 26 25 24 43 43 H 1.09002 * 113.61349 * 270.88434 * 27 20 19 44 44 H 1.09008 * 113.61495 * 139.98399 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8514 2.6101 -0.0015 5 6 0.4524 3.1704 0.0028 6 8 -0.1142 3.0266 1.3067 7 14 0.5049 4.9753 -0.4559 8 6 2.9946 3.3127 -0.0080 9 7 4.0667 2.4607 -0.0102 10 6 3.6348 1.1589 -0.0044 11 7 4.2720 -0.0064 -0.0033 12 6 3.6267 -1.1500 0.0032 13 6 2.2274 -1.1974 0.0055 14 6 1.5226 -2.4950 0.0120 15 8 0.3128 -2.5290 0.1269 16 7 2.2205 -3.6416 -0.1095 17 6 1.5217 -4.9292 -0.0971 18 1 0.4781 -4.8474 -0.4008 19 6 2.2867 -6.0521 -0.8172 20 6 1.8301 -6.9838 0.3179 21 1 0.8710 -7.4658 0.1279 22 6 2.8929 -7.9526 0.7682 23 7 3.0494 -9.1808 0.3660 24 8 3.9944 -9.7087 0.9049 25 6 4.5978 -8.8777 1.7664 26 6 3.9138 -7.7097 1.7155 27 6 1.7268 -5.7287 1.2004 28 1 -0.3633 -0.1078 1.0220 29 1 -0.3634 0.9389 -0.4176 30 1 -0.3633 -0.8312 -0.6043 31 1 -0.1578 2.6294 -0.7203 32 1 0.3783 3.4836 2.0022 33 1 -0.8687 5.5395 -0.4558 34 1 1.3599 5.7187 0.5040 35 1 3.0595 4.3907 -0.0111 36 1 4.9964 2.7376 -0.0143 37 1 4.1870 -2.0732 0.0043 38 1 3.1857 -3.6145 -0.2017 39 1 1.8684 -6.3114 -1.7898 40 1 3.3651 -5.8964 -0.8470 41 1 5.4595 -9.0962 2.3796 42 1 4.1045 -6.8027 2.2699 43 1 2.6521 -5.4845 1.7221 44 1 0.8564 -5.7268 1.8567 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_12890568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:48:14 Heat of formation + Delta-G solvation = 104.243417 kcal Electronic energy + Delta-G solvation = -30506.819679 eV Core-core repulsion = 26203.056955 eV Total energy + Delta-G solvation = -4303.762724 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.87511 -42.85381 -41.30735 -39.83117 -38.64018 -37.82080 -35.57230 -34.94313 -33.97902 -32.56300 -31.92825 -30.99539 -28.97358 -27.10423 -26.81689 -26.31684 -24.73526 -24.14258 -23.77289 -22.36617 -21.66174 -20.85826 -20.60315 -19.36104 -18.77349 -18.69349 -18.45583 -17.70313 -17.56961 -17.26611 -16.72299 -16.61684 -16.21883 -16.07719 -15.75487 -15.56830 -15.40216 -15.17418 -14.69959 -14.41385 -14.13482 -14.05882 -13.84572 -13.73596 -13.63266 -13.57595 -13.37396 -13.30348 -13.06928 -12.75469 -12.45608 -12.35777 -11.90161 -11.78985 -11.69667 -11.27578 -11.14515 -10.86420 -10.56607 -10.52798 -10.26301 -10.11594 -9.61677 -9.12455 -4.83996 -0.34225 -0.07390 0.63982 1.30225 1.35337 1.41774 1.62531 1.68741 1.79117 2.04829 2.06055 2.49674 2.75619 3.15299 3.30566 3.34923 3.44995 3.55628 3.56899 3.62859 3.68719 3.72465 3.77136 3.90884 4.03393 4.13662 4.26663 4.29875 4.32176 4.38081 4.50150 4.61188 4.62981 4.69020 4.71446 4.75218 4.79201 4.81477 4.91863 4.98766 5.02363 5.12953 5.17961 5.23420 5.25971 5.40172 5.53964 5.73791 6.22199 6.48384 6.59746 6.83452 7.17137 7.37579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.063 3.937 3 C -0.166 4.166 4 C -0.196 4.196 5 C -0.059 4.059 6 O -0.549 6.549 7 Si 0.779 3.221 8 C 0.090 3.910 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.182 3.818 13 C -0.241 4.241 14 C 0.572 3.428 15 O -0.565 6.565 16 N -0.701 5.701 17 C 0.127 3.873 18 H 0.105 0.895 19 C -0.121 4.121 20 C -0.038 4.038 21 H 0.104 0.896 22 C 0.020 3.980 23 N -0.406 5.406 24 O 0.078 5.922 25 C -0.047 4.047 26 C -0.239 4.239 27 C -0.130 4.130 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.385 0.615 33 H -0.309 1.309 34 H -0.259 1.259 35 H 0.220 0.780 36 H 0.438 0.562 37 H 0.195 0.805 38 H 0.414 0.586 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.256 0.744 42 H 0.195 0.805 43 H 0.107 0.893 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 4.891 0.070 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.055 3.945 3 C -0.173 4.173 4 C -0.204 4.204 5 C -0.167 4.167 6 O -0.357 6.357 7 Si 0.682 3.318 8 C -0.037 4.037 9 N -0.166 5.166 10 C 0.056 3.944 11 N -0.230 5.230 12 C 0.013 3.987 13 C -0.248 4.248 14 C 0.360 3.640 15 O -0.445 6.445 16 N -0.353 5.353 17 C 0.022 3.978 18 H 0.123 0.877 19 C -0.159 4.159 20 C -0.058 4.058 21 H 0.122 0.878 22 C -0.138 4.138 23 N -0.112 5.112 24 O 0.015 5.985 25 C -0.128 4.128 26 C -0.261 4.261 27 C -0.170 4.170 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.234 0.766 33 H -0.237 1.237 34 H -0.184 1.184 35 H 0.236 0.764 36 H 0.280 0.720 37 H 0.212 0.788 38 H 0.253 0.747 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.272 0.728 42 H 0.212 0.788 43 H 0.126 0.874 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.825 4.674 -0.805 8.311 hybrid contribution 0.037 0.084 1.759 1.762 sum 6.862 4.758 0.954 8.404 Atomic orbital electron populations 1.20997 0.89442 1.03357 1.03013 1.20057 0.96976 0.90222 0.87290 1.19747 0.93291 0.94394 1.09907 1.20708 0.96079 0.90289 1.13280 1.24794 0.90686 1.13667 0.87558 1.86606 1.55106 1.76632 1.17382 0.94126 0.79162 0.70169 0.88361 1.22317 0.84013 0.97195 1.00194 1.41603 1.10591 1.01749 1.62699 1.18764 0.89470 0.86841 0.99351 1.66514 1.40852 0.96472 1.19121 1.22971 0.89634 0.95310 0.90791 1.20507 0.95473 0.93324 1.15544 1.18024 0.86449 0.84025 0.75455 1.90749 1.15172 1.87535 1.51079 1.45703 1.11239 1.04522 1.73805 1.22376 0.97877 0.80615 0.96936 0.87684 1.23344 1.01902 0.92857 0.97847 1.20699 0.95471 0.91299 0.98326 0.87835 1.23764 0.99855 0.92178 0.98027 1.73877 1.05746 1.11533 1.20052 1.84814 1.31787 1.38947 1.42993 1.26891 1.01235 0.89430 0.95263 1.23048 0.97342 1.02245 1.03426 1.23523 1.04058 0.92472 0.96901 0.91184 0.90684 0.89865 0.87141 0.76641 1.23698 1.18428 0.76381 0.72044 0.78833 0.74749 0.89961 0.87801 0.72840 0.78751 0.87430 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 8.68 71.24 0.62 -0.30 16 2 C 0.06 0.45 5.98 -19.25 -0.12 0.34 16 3 C -0.17 -0.82 6.16 -20.19 -0.12 -0.95 16 4 C -0.20 0.10 5.57 -18.63 -0.10 0.00 16 5 C -0.06 0.06 2.08 71.24 0.15 0.21 16 6 O -0.55 -1.42 12.88 -148.98 -1.92 -3.34 16 7 Si 0.78 -4.20 30.83 68.60 2.11 -2.08 16 8 C 0.09 -0.55 10.44 82.97 0.87 0.32 16 9 N -0.56 2.16 6.04 -192.24 -1.16 1.00 16 10 C 0.29 0.96 8.42 134.02 1.13 2.09 16 11 N -0.52 -1.94 10.37 -191.74 -1.99 -3.92 16 12 C 0.18 0.11 10.67 85.20 0.91 1.02 16 13 C -0.24 -1.09 5.89 -19.99 -0.12 -1.20 16 14 C 0.57 2.87 7.72 86.73 0.67 3.54 16 15 O -0.57 -6.90 13.10 -3.95 -0.05 -6.95 16 16 N -0.70 1.60 5.31 -443.08 -2.35 -0.75 16 17 C 0.13 -0.21 4.24 45.52 0.19 -0.02 16 18 H 0.11 0.25 7.47 -2.38 -0.02 0.23 16 19 C -0.12 0.42 7.38 31.12 0.23 0.65 16 20 C -0.04 0.03 4.29 -11.02 -0.05 -0.02 16 21 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 22 C 0.02 0.05 6.70 43.58 0.29 0.34 16 23 N -0.41 -3.10 12.07 -49.57 -0.60 -3.70 16 24 O 0.08 0.33 11.20 71.63 0.80 1.13 16 25 C -0.05 0.19 12.30 67.18 0.83 1.02 16 26 C -0.24 0.79 10.28 22.40 0.23 1.02 16 27 C -0.13 0.39 7.27 31.12 0.23 0.61 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.46 5.06 -2.39 -0.01 0.44 16 30 H 0.08 0.88 5.96 -2.39 -0.01 0.87 16 31 H 0.11 0.00 6.03 -2.39 -0.01 -0.02 16 32 H 0.38 -1.44 8.70 -74.06 -0.64 -2.08 16 33 H -0.31 -1.21 7.11 99.48 0.71 -0.50 16 34 H -0.26 1.32 7.00 99.48 0.70 2.01 16 35 H 0.22 -3.04 6.28 -2.91 -0.02 -3.06 16 36 H 0.44 -4.09 8.96 -92.71 -0.83 -4.92 16 37 H 0.20 -1.53 6.43 -2.91 -0.02 -1.55 16 38 H 0.41 -3.52 6.81 -92.71 -0.63 -4.15 16 39 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.10 -0.62 8.07 -2.39 -0.02 -0.64 16 41 H 0.26 -3.48 8.06 -2.91 -0.02 -3.50 16 42 H 0.20 -1.78 7.12 -2.91 -0.02 -1.80 16 43 H 0.11 -0.67 6.62 -2.39 -0.02 -0.69 16 44 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 Total: 0.00 -28.56 364.09 -0.28 -28.84 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -0.96 Total: -18.89 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.83 Total: 8.67 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -6.10 Total: -7.37 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.17 Total: -9.16 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.11 Total: -2.08 kcal Total: -28.56 -0.28 -28.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_12890568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.079 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds