Wall clock time and date at job start Sun Mar 7 2021 09:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3 5 5 C 1.38332 * 119.87248 * 119.72115 * 4 2 1 6 6 C 1.38003 * 120.12712 * 179.76640 * 5 4 2 7 7 C 1.39395 * 119.87311 * 0.51326 * 6 5 4 8 8 C 1.48275 * 120.13018 * 179.76233 * 7 6 5 9 9 C 1.39509 * 119.97525 * 179.69993 * 8 7 6 10 10 C 1.37672 * 120.02235 * 179.76695 * 9 8 7 11 11 C 1.39710 * 119.97112 * 0.51517 * 10 9 8 12 12 C 1.47717 * 120.01826 * 179.72070 * 11 10 9 13 13 O 1.21574 * 119.99968 * 180.02562 * 12 11 10 14 14 N 1.34776 * 120.00426 * 0.02562 * 12 11 10 15 15 C 1.46502 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08996 * 112.84993 * 25.33271 * 15 14 12 17 17 C 1.53780 * 113.61241 * 156.52753 * 15 14 12 18 18 C 1.53784 * 87.07874 * 139.97791 * 17 15 14 19 19 H 1.09000 * 113.61297 * 89.20429 * 18 17 15 20 20 C 1.50698 * 113.61397 * 220.01653 * 18 17 15 21 21 N 1.30180 * 126.80108 * 264.68492 * 20 18 17 22 22 O 1.20923 * 111.60287 * 179.79557 * 21 20 18 23 23 C 1.34043 * 111.56642 * 0.49100 * 22 21 20 24 24 C 1.35445 * 106.44860 * 359.70601 * 23 22 21 25 25 C 1.53785 * 113.61338 * 254.13554 * 15 14 12 26 26 C 1.39701 * 119.95543 * 359.73817 * 11 10 9 27 27 C 1.37666 * 119.97809 * 0.02562 * 26 11 10 28 28 C 1.39406 * 119.74644 * 359.74506 * 7 6 5 29 29 C 1.38007 * 119.86700 * 359.97438 * 28 7 6 30 30 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 31 31 H 1.09001 * 109.47255 * 120.00067 * 2 1 3 32 32 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 33 33 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 34 34 H 1.08004 * 119.93681 * 0.02562 * 5 4 2 35 35 H 1.08007 * 120.06388 * 180.28229 * 6 5 4 36 36 H 1.07995 * 119.98799 * 0.02562 * 9 8 7 37 37 H 1.07998 * 120.01135 * 180.25464 * 10 9 8 38 38 H 0.97003 * 119.99973 * 359.97438 * 14 12 11 39 39 H 1.09000 * 113.61549 * 254.52569 * 17 15 14 40 40 H 1.08999 * 113.61573 * 25.34933 * 17 15 14 41 41 H 1.08002 * 126.77580 * 179.68697 * 23 22 21 42 42 H 1.08001 * 128.01192 * 179.97438 * 24 23 22 43 43 H 1.09004 * 113.61173 * 334.56757 * 25 15 14 44 44 H 1.08994 * 113.61530 * 105.46987 * 25 15 14 45 45 H 1.08007 * 120.01410 * 179.97438 * 26 11 10 46 46 H 1.07994 * 119.99297 * 180.02562 * 27 26 11 47 47 H 1.07995 * 120.06862 * 180.02562 * 28 7 6 48 48 H 1.08003 * 119.93426 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7218 -0.0339 -2.1421 6 6 3.1887 -0.6807 -3.2682 7 6 2.8537 -2.0153 -3.4914 8 6 3.3479 -2.7143 -4.7021 9 6 3.0158 -4.0517 -4.9192 10 6 3.4702 -4.7003 -6.0453 11 6 4.2731 -4.0216 -6.9655 12 6 4.7663 -4.7183 -8.1710 13 8 5.4653 -4.1275 -8.9712 14 7 4.4414 -6.0088 -8.3840 15 6 4.9310 -6.6999 -9.5793 16 1 5.8512 -6.2668 -9.9715 17 6 4.9858 -8.2292 -9.4277 18 6 4.4689 -8.3123 -10.8737 19 1 5.2622 -8.3217 -11.6211 20 6 3.4495 -9.4011 -11.0888 21 7 3.6760 -10.6059 -11.5268 22 8 2.6579 -11.2553 -11.5902 23 6 1.5927 -10.5408 -11.2008 24 6 2.0569 -9.3147 -10.8607 25 6 3.8491 -6.9210 -10.6497 26 6 4.6094 -2.6838 -6.7444 27 6 4.1499 -2.0358 -5.6201 28 6 2.0524 -2.6904 -2.5719 29 6 1.5960 -2.0350 -1.4464 30 1 -0.3934 0.4417 0.7649 31 1 1.7923 -0.5138 0.8900 32 1 1.5614 2.4679 -1.2085 33 1 1.5878 2.4586 1.2242 34 1 2.9774 1.0013 -1.9702 35 1 3.8096 -0.1529 -3.9770 36 1 2.3985 -4.5773 -4.2056 37 1 3.2095 -5.7345 -6.2153 38 1 3.8839 -6.4804 -7.7453 39 1 5.9957 -8.6197 -9.3019 40 1 4.2858 -8.6201 -8.6893 41 1 0.5668 -10.8765 -11.1654 42 1 1.4936 -8.4670 -10.4994 43 1 2.8368 -6.9537 -10.2469 44 1 3.9427 -6.2568 -11.5088 45 1 5.2304 -2.1584 -7.4549 46 1 4.4094 -1.0015 -5.4491 47 1 1.7900 -3.7245 -2.7395 48 1 0.9755 -2.5571 -0.7331 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_13158362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:48:18 Heat of formation + Delta-G solvation = 85.206847 kcal Electronic energy + Delta-G solvation = -31486.407315 eV Core-core repulsion = 27056.218644 eV Total energy + Delta-G solvation = -4430.188671 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.146 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -45.88642 -41.59089 -40.85127 -39.91659 -38.94469 -37.65244 -35.44854 -34.34699 -33.69356 -32.59371 -32.50810 -31.56388 -30.86444 -27.52143 -26.86264 -26.51322 -24.64339 -24.49507 -23.90816 -22.66153 -22.48318 -21.85300 -21.30777 -20.79497 -19.10783 -18.80211 -18.56682 -18.47568 -18.01366 -17.52237 -16.91259 -16.74801 -16.39310 -16.22203 -16.02307 -15.66450 -15.51719 -15.38101 -15.09088 -14.92029 -14.71595 -14.42491 -14.28546 -14.08357 -14.00389 -13.82386 -13.71047 -13.66888 -13.42063 -13.22173 -12.90174 -12.81254 -12.52331 -12.38742 -12.11167 -11.93870 -11.89463 -11.75097 -11.62064 -11.09152 -10.86968 -10.79241 -10.55583 -10.45166 -10.14528 -10.04578 -9.94370 -9.05330 -4.94226 -0.67845 0.36680 0.41364 0.50698 0.62928 1.28571 1.28919 1.58253 1.78296 1.93500 2.04284 2.48629 2.59208 2.99844 3.13252 3.29717 3.35790 3.46301 3.53266 3.63701 3.64922 3.76045 3.85619 3.87979 3.89434 4.00410 4.02317 4.06314 4.26862 4.30023 4.30736 4.37054 4.45213 4.47185 4.58288 4.64980 4.66325 4.70153 4.73904 4.76344 4.88680 4.90759 4.93305 4.95340 5.09549 5.11670 5.15072 5.18844 5.21987 5.27964 5.42848 5.48089 5.51448 5.66424 5.81261 5.93661 6.45305 6.56812 7.12188 7.36348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.758 3.242 4 C -0.082 4.082 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.061 4.061 8 C -0.022 4.022 9 C -0.121 4.121 10 C -0.073 4.073 11 C -0.152 4.152 12 C 0.558 3.442 13 O -0.580 6.580 14 N -0.700 5.700 15 C 0.123 3.877 16 H 0.102 0.898 17 C -0.119 4.119 18 C -0.038 4.038 19 H 0.104 0.896 20 C 0.020 3.980 21 N -0.405 5.405 22 O 0.078 5.922 23 C -0.046 4.046 24 C -0.240 4.240 25 C -0.130 4.130 26 C -0.070 4.070 27 C -0.123 4.123 28 C -0.107 4.107 29 C -0.103 4.103 30 H 0.395 0.605 31 H 0.098 0.902 32 H -0.301 1.301 33 H -0.287 1.287 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.416 0.584 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.256 0.744 42 H 0.195 0.805 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -1.404 6.148 7.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.194 4.194 3 Si 0.664 3.336 4 C -0.082 4.082 5 C -0.140 4.140 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.022 4.022 9 C -0.138 4.138 10 C -0.091 4.091 11 C -0.155 4.155 12 C 0.347 3.653 13 O -0.461 6.461 14 N -0.351 5.351 15 C 0.018 3.982 16 H 0.120 0.880 17 C -0.158 4.158 18 C -0.058 4.058 19 H 0.122 0.878 20 C -0.138 4.138 21 N -0.111 5.111 22 O 0.015 5.985 23 C -0.127 4.127 24 C -0.261 4.261 25 C -0.169 4.169 26 C -0.089 4.089 27 C -0.141 4.141 28 C -0.125 4.125 29 C -0.121 4.121 30 H 0.245 0.755 31 H 0.115 0.885 32 H -0.229 1.229 33 H -0.214 1.214 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.255 0.745 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.272 0.728 42 H 0.212 0.788 43 H 0.126 0.874 44 H 0.092 0.908 45 H 0.146 0.854 46 H 0.165 0.835 47 H 0.166 0.834 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.271 -1.182 4.645 5.303 hybrid contribution -1.870 0.426 0.755 2.061 sum -4.141 -0.756 5.399 6.846 Atomic orbital electron populations 1.86536 1.18484 1.80655 1.51111 1.24986 0.84068 1.11538 0.98776 0.94206 0.90534 0.72550 0.76336 1.19622 0.98044 0.94755 0.95810 1.21095 0.98624 1.00111 0.94176 1.21461 0.99561 0.93893 0.97532 1.18942 0.98840 0.94099 0.94266 1.19139 0.95782 0.94083 0.93199 1.21472 1.00552 0.93604 0.98181 1.21468 0.94471 1.00700 0.92489 1.19990 1.03534 0.95640 0.96369 1.18578 0.79152 0.82219 0.85332 1.90777 1.39902 1.67172 1.48255 1.45744 1.52987 1.11001 1.25392 1.22401 0.98257 0.91861 0.85682 0.87993 1.23327 1.03157 0.93898 0.95424 1.20722 0.95507 0.90722 0.98838 0.87825 1.23738 0.96001 0.93341 1.00747 1.73881 1.08507 1.07855 1.20905 1.84818 1.12047 1.38054 1.63590 1.26896 0.95864 0.91471 0.98491 1.23043 0.93101 1.00938 1.09009 1.23546 1.00080 0.94029 0.99264 1.21262 0.97276 0.93462 0.96905 1.21387 0.97927 1.01248 0.93536 1.21529 0.96593 1.01009 0.93351 1.21114 0.98928 0.94119 0.97920 0.75451 0.88461 1.22862 1.21422 0.84114 0.83492 0.82648 0.82355 0.74534 0.89886 0.87718 0.72784 0.78783 0.87408 0.90759 0.85406 0.83504 0.83352 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.68 12.74 -148.98 -1.90 -2.58 16 2 C -0.08 0.13 2.81 71.23 0.20 0.33 16 3 Si 0.76 -1.81 29.78 68.60 2.04 0.23 16 4 C -0.08 -0.08 5.43 -19.82 -0.11 -0.19 16 5 C -0.12 0.02 8.65 22.24 0.19 0.21 16 6 C -0.11 0.06 9.43 22.49 0.21 0.27 16 7 C -0.06 0.00 5.88 -20.05 -0.12 -0.12 16 8 C -0.02 0.01 5.88 -19.99 -0.12 -0.11 16 9 C -0.12 0.44 9.41 22.44 0.21 0.65 16 10 C -0.07 0.30 9.52 22.49 0.21 0.52 16 11 C -0.15 -0.27 5.88 -20.06 -0.12 -0.39 16 12 C 0.56 2.66 7.77 86.75 0.67 3.34 16 13 O -0.58 -7.89 15.95 -3.95 -0.06 -7.96 16 14 N -0.70 1.66 5.31 -443.02 -2.35 -0.69 16 15 C 0.12 -0.17 4.21 45.52 0.19 0.02 16 16 H 0.10 0.31 7.50 -2.39 -0.02 0.29 16 17 C -0.12 0.44 7.38 31.12 0.23 0.67 16 18 C -0.04 0.03 4.29 -10.96 -0.05 -0.02 16 19 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 20 C 0.02 0.04 6.70 43.58 0.29 0.33 16 21 N -0.40 -2.95 12.07 -49.55 -0.60 -3.55 16 22 O 0.08 0.30 11.20 71.60 0.80 1.10 16 23 C -0.05 0.21 12.30 67.17 0.83 1.04 16 24 C -0.24 0.88 10.28 22.40 0.23 1.11 16 25 C -0.13 0.37 7.29 31.18 0.23 0.60 16 26 C -0.07 -0.22 9.58 22.49 0.22 -0.01 16 27 C -0.12 -0.04 9.41 22.44 0.21 0.17 16 28 C -0.11 0.12 9.43 22.50 0.21 0.33 16 29 C -0.10 -0.05 9.59 22.24 0.21 0.16 16 30 H 0.40 -2.62 8.74 -74.06 -0.65 -3.26 16 31 H 0.10 -0.54 7.96 -2.39 -0.02 -0.56 16 32 H -0.30 -1.58 7.11 99.48 0.71 -0.87 16 33 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 34 H 0.14 -0.50 4.86 -2.91 -0.01 -0.51 16 35 H 0.15 -0.67 6.19 -2.91 -0.02 -0.69 16 36 H 0.16 -1.34 6.19 -2.91 -0.02 -1.36 16 37 H 0.16 -1.79 6.39 -2.91 -0.02 -1.81 16 38 H 0.42 -3.71 6.73 -92.71 -0.62 -4.33 16 39 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 40 H 0.10 -0.67 8.06 -2.39 -0.02 -0.69 16 41 H 0.26 -3.61 8.06 -2.91 -0.02 -3.64 16 42 H 0.20 -1.84 7.12 -2.91 -0.02 -1.86 16 43 H 0.11 -0.67 6.63 -2.38 -0.02 -0.68 16 44 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.13 0.61 7.64 -2.91 -0.02 0.59 16 46 H 0.15 -0.50 6.19 -2.91 -0.02 -0.51 16 47 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 48 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -27.47 399.31 1.79 -25.67 By element: Atomic # 1 Polarization: -20.95 SS G_CDS: -0.18 Total: -21.13 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.04 Total: 8.90 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -2.95 Total: -4.24 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.04 Total: 0.23 kcal Total: -27.47 1.79 -25.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_13158362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.881 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds