Wall clock time and date at job start Sun Mar 7 2021 09:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.47141 * 2 1 4 4 C 1.50703 * 109.47237 * 119.99536 * 2 1 3 5 5 C 1.34189 * 126.54320 * 255.02605 * 4 2 1 6 6 N 1.36869 * 109.96633 * 180.02562 * 5 4 2 7 7 C 1.37401 * 109.97970 * 359.97438 * 6 5 4 8 8 C 1.39333 * 133.24989 * 180.02562 * 7 6 5 9 9 C 1.36350 * 120.23718 * 179.97438 * 8 7 6 10 10 C 1.40166 * 120.66782 * 359.97438 * 9 8 7 11 11 C 1.47658 * 119.97244 * 180.02562 * 10 9 8 12 12 O 1.21573 * 120.00010 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99714 * 359.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72385 * 13 11 10 15 15 H 1.09004 * 112.85025 * 334.94284 * 14 13 11 16 16 C 1.53777 * 113.61716 * 106.14251 * 14 13 11 17 17 C 1.53950 * 87.02326 * 139.95030 * 16 14 13 18 18 H 1.09005 * 113.53783 * 89.19298 * 17 16 14 19 19 C 1.50702 * 113.74402 * 220.05566 * 17 16 14 20 20 N 1.30173 * 126.80291 * 192.62007 * 19 17 16 21 21 O 1.20923 * 111.60753 * 179.97438 * 20 19 17 22 22 C 1.34044 * 111.56501 * 359.97438 * 21 20 19 23 23 C 1.35456 * 106.44252 * 359.75478 * 22 21 20 24 24 C 1.53779 * 87.10991 * 334.63899 * 17 16 14 25 25 C 1.39182 * 120.05535 * 0.29554 * 10 9 8 26 26 C 1.39235 * 119.39161 * 359.43655 * 25 10 9 27 27 H 0.96702 * 113.99784 * 300.00358 * 1 2 3 28 28 H 1.08996 * 109.47476 * 239.99811 * 2 1 3 29 29 H 1.48502 * 110.00179 * 178.68019 * 3 2 1 30 30 H 1.48498 * 109.99895 * 299.99642 * 3 2 1 31 31 H 1.07993 * 125.01660 * 0.02562 * 5 4 2 32 32 H 0.96999 * 125.01003 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.88147 * 359.96778 * 8 7 6 34 34 H 1.07997 * 119.66325 * 180.02562 * 9 8 7 35 35 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 36 36 H 1.08996 * 113.61392 * 254.53373 * 16 14 13 37 37 H 1.09007 * 113.61140 * 25.42982 * 16 14 13 38 38 H 1.07995 * 126.77504 * 179.97438 * 22 21 20 39 39 H 1.07999 * 128.00163 * 180.22846 * 23 22 21 40 40 H 1.08996 * 113.61654 * 270.80826 * 24 17 16 41 41 H 1.09006 * 113.68763 * 139.92279 * 24 17 16 42 42 H 1.08003 * 120.30781 * 179.72211 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.4603 -0.1385 2.3232 6 7 2.8030 -1.1004 3.2346 7 6 2.4959 -2.3454 2.7412 8 6 2.6349 -3.6350 3.2501 9 6 2.2309 -4.7103 2.5156 10 6 1.6711 -4.5368 1.2423 11 6 1.2382 -5.7121 0.4604 12 8 0.7530 -5.5622 -0.6442 13 7 1.3820 -6.9512 0.9708 14 6 0.9470 -8.1169 0.1975 15 1 0.1668 -7.8782 -0.5254 16 6 2.1088 -8.9307 -0.3964 17 6 1.3084 -10.1926 -0.0261 18 1 0.6277 -10.5222 -0.8110 19 6 2.1576 -11.3114 0.5199 20 7 1.7966 -12.5495 0.6967 21 8 2.6978 -13.2156 1.1511 22 6 3.8049 -12.4837 1.3393 23 6 3.5063 -11.2258 0.9350 24 6 0.6286 -9.3469 1.0637 25 6 1.5280 -3.2578 0.7122 26 6 1.9345 -2.1577 1.4625 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4678 -1.2085 31 1 2.5956 0.9238 2.4628 32 1 3.2036 -0.9284 4.1011 33 1 3.0644 -3.7833 4.2299 34 1 2.3426 -5.7057 2.9192 35 1 1.7695 -7.0708 1.8520 36 1 2.2351 -8.7920 -1.4701 37 1 3.0421 -8.8275 0.1574 38 1 4.7496 -12.8296 1.7319 39 1 4.1490 -10.3579 0.9329 40 1 1.1563 -9.3577 2.0174 41 1 -0.4386 -9.5431 1.1682 42 1 1.1013 -3.1197 -0.2703 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_13287722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:48:37 Heat of formation + Delta-G solvation = 85.692254 kcal Electronic energy + Delta-G solvation = -27813.863611 eV Core-core repulsion = 23730.259978 eV Total energy + Delta-G solvation = -4083.603633 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.89291 -42.44998 -41.27383 -39.66976 -37.92537 -37.39957 -35.40441 -33.93836 -33.24939 -32.57547 -30.86583 -30.44873 -27.11170 -26.86246 -26.46559 -24.81603 -23.90632 -23.46582 -22.26260 -21.52896 -20.97905 -20.57855 -19.29549 -18.81116 -18.50238 -18.38263 -17.56029 -17.49535 -16.97692 -16.46013 -16.20000 -16.14806 -15.80459 -15.56818 -15.40679 -15.11590 -14.87507 -14.76394 -14.37149 -14.08338 -13.92688 -13.74556 -13.67680 -13.58582 -13.41402 -12.82854 -12.62720 -12.39328 -12.35283 -12.19298 -11.94104 -11.92779 -11.74855 -11.09053 -10.87516 -10.79721 -10.55878 -10.32590 -10.17234 -9.32247 -8.79940 -5.00991 -0.16120 0.20974 0.62624 1.28188 1.35674 1.53530 1.71043 1.82033 2.03128 2.06674 2.14349 2.48517 2.87518 3.12729 3.29439 3.52032 3.61170 3.62920 3.67477 3.76021 3.86886 3.87332 3.93243 4.00273 4.14953 4.29963 4.37612 4.44017 4.47090 4.52943 4.59023 4.62982 4.64639 4.73303 4.75705 4.79443 4.88707 4.94413 5.00318 5.12537 5.18203 5.27237 5.34443 5.45586 5.52775 5.58528 5.99187 6.49183 6.61494 6.87800 7.16441 7.36134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.054 4.054 3 Si 0.812 3.188 4 C -0.227 4.227 5 C 0.087 3.913 6 N -0.571 5.571 7 C 0.111 3.889 8 C -0.125 4.125 9 C -0.067 4.067 10 C -0.179 4.179 11 C 0.561 3.439 12 O -0.589 6.589 13 N -0.699 5.699 14 C 0.122 3.878 15 H 0.098 0.902 16 C -0.130 4.130 17 C -0.037 4.037 18 H 0.102 0.898 19 C 0.020 3.980 20 N -0.405 5.405 21 O 0.079 5.921 22 C -0.046 4.046 23 C -0.239 4.239 24 C -0.118 4.118 25 C -0.025 4.025 26 C -0.130 4.130 27 H 0.393 0.607 28 H 0.083 0.917 29 H -0.279 1.279 30 H -0.309 1.309 31 H 0.221 0.779 32 H 0.440 0.560 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.416 0.584 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.257 0.743 39 H 0.195 0.805 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 4.168 11.399 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.162 4.162 3 Si 0.716 3.284 4 C -0.234 4.234 5 C -0.040 4.040 6 N -0.175 5.175 7 C 0.001 3.999 8 C -0.145 4.145 9 C -0.087 4.087 10 C -0.183 4.183 11 C 0.351 3.649 12 O -0.470 6.470 13 N -0.350 5.350 14 C 0.017 3.983 15 H 0.116 0.884 16 C -0.169 4.169 17 C -0.057 4.057 18 H 0.121 0.879 19 C -0.139 4.139 20 N -0.111 5.111 21 O 0.016 5.984 22 C -0.127 4.127 23 C -0.261 4.261 24 C -0.157 4.157 25 C -0.044 4.044 26 C -0.135 4.135 27 H 0.243 0.757 28 H 0.100 0.900 29 H -0.206 1.206 30 H -0.237 1.237 31 H 0.237 0.763 32 H 0.281 0.719 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.273 0.727 39 H 0.212 0.788 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.937 3.875 9.600 11.934 hybrid contribution 0.694 -0.316 -0.229 0.797 sum 6.631 3.559 9.370 12.018 Atomic orbital electron populations 1.86488 1.18152 1.82417 1.50256 1.24756 0.84603 1.11282 0.95595 0.94046 0.76965 0.72389 0.84957 1.20854 1.11826 0.91539 0.99222 1.22235 0.97958 0.95890 0.87938 1.41782 1.53734 1.03129 1.18849 1.18633 0.99692 0.87991 0.93577 1.20080 1.04307 0.87986 1.02121 1.20879 0.95923 1.00291 0.91571 1.19576 1.09086 0.92118 0.97557 1.18536 0.77084 0.84127 0.85167 1.90766 1.46906 1.86823 1.22550 1.45680 1.63299 1.04390 1.21654 1.22384 0.97686 0.83318 0.94938 0.88393 1.23542 0.98742 0.92273 1.02339 1.20699 0.96789 0.89273 0.98932 0.87937 1.23713 0.95432 0.92686 1.02023 1.73877 1.13263 1.06871 1.17117 1.84818 1.17110 1.36487 1.60014 1.26900 0.93922 0.91004 1.00847 1.23042 0.95526 1.00673 1.06828 1.23322 1.02177 0.92157 0.98015 1.20595 0.94625 0.90939 0.98292 1.19230 1.05167 0.93628 0.95480 0.75687 0.89959 1.20551 1.23703 0.76322 0.71895 0.81970 0.82108 0.74460 0.90962 0.87297 0.72713 0.78784 0.87556 0.89931 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.60 12.88 -148.98 -1.92 -4.51 16 2 C -0.05 -0.14 3.06 71.24 0.22 0.08 16 3 Si 0.81 -2.70 30.76 68.60 2.11 -0.59 16 4 C -0.23 -0.34 5.58 -18.61 -0.10 -0.44 16 5 C 0.09 -0.56 10.43 82.98 0.87 0.30 16 6 N -0.57 4.03 6.05 -187.49 -1.13 2.89 16 7 C 0.11 -0.05 7.27 39.19 0.28 0.23 16 8 C -0.12 0.49 10.00 22.09 0.22 0.71 16 9 C -0.07 0.16 9.46 22.30 0.21 0.37 16 10 C -0.18 -1.08 5.87 -20.09 -0.12 -1.20 16 11 C 0.56 4.91 7.76 86.73 0.67 5.58 16 12 O -0.59 -10.91 15.95 -3.95 -0.06 -10.97 16 13 N -0.70 -0.15 5.31 -443.09 -2.35 -2.50 16 14 C 0.12 0.11 4.21 45.52 0.19 0.30 16 15 H 0.10 0.58 7.50 -2.39 -0.02 0.56 16 16 C -0.13 0.14 7.29 31.18 0.23 0.37 16 17 C -0.04 -0.02 4.29 -10.96 -0.05 -0.07 16 18 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 19 C 0.02 0.06 6.70 43.58 0.29 0.35 16 20 N -0.40 -3.23 12.07 -49.55 -0.60 -3.83 16 21 O 0.08 0.34 11.20 71.59 0.80 1.14 16 22 C -0.05 0.19 12.30 67.18 0.83 1.02 16 23 C -0.24 0.72 10.28 22.40 0.23 0.95 16 24 C -0.12 0.26 7.38 31.12 0.23 0.49 16 25 C -0.02 -0.25 9.64 22.74 0.22 -0.04 16 26 C -0.13 -0.78 6.34 -20.21 -0.13 -0.91 16 27 H 0.39 -2.00 8.70 -74.06 -0.64 -2.64 16 28 H 0.08 0.60 7.96 -2.39 -0.02 0.58 16 29 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 30 H -0.31 -1.75 7.11 99.48 0.71 -1.04 16 31 H 0.22 -3.43 6.35 -2.91 -0.02 -3.44 16 32 H 0.44 -6.29 8.96 -92.71 -0.83 -7.12 16 33 H 0.16 -1.79 8.06 -2.91 -0.02 -1.81 16 34 H 0.16 -1.62 6.36 -2.91 -0.02 -1.64 16 35 H 0.42 -2.91 6.71 -92.71 -0.62 -3.53 16 36 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.11 -0.52 6.64 -2.38 -0.02 -0.53 16 38 H 0.26 -3.56 8.06 -2.91 -0.02 -3.58 16 39 H 0.20 -1.71 7.13 -2.91 -0.02 -1.73 16 40 H 0.11 -0.56 8.06 -2.39 -0.02 -0.58 16 41 H 0.08 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.10 1.62 7.64 -2.91 -0.02 1.60 16 Total: 0.00 -34.67 358.86 0.20 -34.47 By element: Atomic # 1 Polarization: -23.24 SS G_CDS: -0.94 Total: -24.19 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.29 Total: 8.09 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -4.09 Total: -3.44 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.18 Total: -14.35 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.11 Total: -0.59 kcal Total: -34.67 0.20 -34.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_13287722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.165 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds