Wall clock time and date at job start Sun Mar 7 2021 09:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38503 * 119.80488 * 120.00178 * 4 2 1 6 6 C 1.37831 * 120.30152 * 179.97438 * 5 4 2 7 7 C 1.39668 * 119.90625 * 0.02562 * 6 5 4 8 8 C 1.47537 * 120.18922 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99764 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00273 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00429 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.84725 * 23.79691 * 11 10 8 13 13 C 1.53783 * 113.61669 * 154.99530 * 11 10 8 14 14 C 1.53783 * 87.08014 * 139.98271 * 13 11 10 15 15 H 1.09002 * 113.61335 * 89.11766 * 14 13 11 16 16 C 1.50703 * 113.61177 * 219.93454 * 14 13 11 17 17 N 1.30175 * 126.79896 * 265.02188 * 16 14 13 18 18 O 1.20924 * 111.60054 * 179.97438 * 17 16 14 19 19 C 1.34045 * 111.56719 * 0.02562 * 18 17 16 20 20 C 1.35449 * 106.44607 * 359.74885 * 19 18 17 21 21 C 1.53777 * 87.08169 * 334.56765 * 14 13 11 22 22 C 1.40172 * 119.61965 * 0.02562 * 7 6 5 23 23 O 1.35657 * 120.15240 * 180.02562 * 22 7 6 24 24 C 1.38098 * 119.80547 * 299.72994 * 4 2 1 25 25 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 26 26 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 27 27 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 28 28 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 29 29 H 1.08007 * 119.84751 * 359.97438 * 5 4 2 30 30 H 1.07998 * 120.04676 * 180.02562 * 6 5 4 31 31 H 0.97006 * 119.99994 * 359.97438 * 10 8 7 32 32 H 1.09005 * 113.61156 * 254.52634 * 13 11 10 33 33 H 1.08995 * 113.61620 * 25.43352 * 13 11 10 34 34 H 1.08006 * 126.77609 * 180.02562 * 19 18 17 35 35 H 1.07999 * 128.00793 * 180.24316 * 20 19 18 36 36 H 1.09004 * 113.61558 * 270.88493 * 21 14 13 37 37 H 1.09000 * 113.62032 * 139.98197 * 21 14 13 38 38 H 0.96698 * 113.99611 * 89.99405 * 23 22 7 39 39 H 1.07997 * 119.95753 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.7276 -0.0336 -2.1393 6 6 3.1932 -0.6737 -3.2677 7 6 2.8610 -2.0108 -3.4969 8 6 3.3555 -2.7018 -4.7030 9 8 3.0646 -3.8660 -4.8989 10 7 4.1306 -2.0430 -5.5871 11 6 4.6221 -2.7293 -6.7844 12 1 4.0010 -3.5780 -7.0707 13 6 4.9433 -1.7797 -7.9507 14 6 6.1771 -2.6568 -8.2217 15 1 5.9822 -3.4864 -8.9013 16 6 7.4065 -1.8699 -8.5962 17 7 7.8247 -1.6027 -9.7997 18 8 8.8428 -0.9503 -9.7826 19 6 9.2428 -0.6939 -8.5292 20 6 8.3313 -1.2711 -7.7102 21 6 6.1249 -3.0518 -6.7365 22 6 2.0542 -2.6920 -2.5751 23 8 1.7253 -3.9910 -2.7868 24 6 1.6001 -2.0343 -1.4418 25 1 -0.3934 0.4417 0.7649 26 1 1.7923 -0.5138 0.8901 27 1 3.5346 1.7703 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 2.9847 1.0005 -1.9631 30 1 3.8140 -0.1420 -3.9736 31 1 4.3630 -1.1142 -5.4307 32 1 4.2043 -1.8063 -8.7516 33 1 5.1891 -0.7663 -7.6336 34 1 10.1166 -0.1335 -8.2312 35 1 8.3156 -1.2747 -6.6303 36 1 6.6938 -2.3861 -6.0873 37 1 6.3399 -4.1052 -6.5569 38 1 2.3509 -4.6222 -2.4055 39 1 0.9829 -2.5568 -0.7260 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_13422076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:49:07 Heat of formation + Delta-G solvation = 19.949063 kcal Electronic energy + Delta-G solvation = -25466.911118 eV Core-core repulsion = 21539.190265 eV Total energy + Delta-G solvation = -3927.720853 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.91457 -41.75292 -40.67842 -39.22667 -38.31397 -37.26279 -35.35027 -34.11674 -32.76661 -32.51969 -31.18866 -27.99431 -26.97549 -26.60639 -24.19605 -23.95656 -23.49602 -22.27308 -21.49580 -20.95203 -19.26428 -18.88664 -18.73152 -18.49542 -18.45724 -17.70401 -16.99191 -16.72756 -16.47413 -16.17834 -15.87265 -15.81145 -15.49666 -15.16858 -14.75161 -14.46874 -14.27764 -14.00507 -13.86486 -13.76768 -13.56862 -13.35176 -13.06508 -12.85292 -12.47716 -12.39601 -12.14417 -12.03931 -11.80234 -11.76274 -10.98012 -10.79420 -10.60902 -10.56120 -10.18365 -10.05978 -9.82588 -5.10041 -0.45933 0.04534 0.52286 1.11398 1.19834 1.49348 1.71564 1.82133 2.00014 2.29690 2.51191 3.00044 3.04724 3.20397 3.21352 3.42906 3.49636 3.54545 3.63169 3.65105 3.77835 3.88620 3.96584 4.14526 4.14652 4.16995 4.32049 4.46919 4.49291 4.52917 4.58430 4.63265 4.64189 4.79424 4.83894 4.87680 4.96185 5.04315 5.12957 5.15086 5.42320 5.46857 6.39129 6.47373 6.67566 7.16734 7.29265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.079 4.079 3 Si 0.688 3.312 4 C -0.031 4.031 5 C -0.143 4.143 6 C -0.063 4.063 7 C -0.166 4.166 8 C 0.561 3.439 9 O -0.515 6.515 10 N -0.718 5.718 11 C 0.127 3.873 12 H 0.123 0.877 13 C -0.133 4.133 14 C -0.034 4.034 15 H 0.114 0.886 16 C 0.029 3.971 17 N -0.362 5.362 18 O 0.100 5.900 19 C -0.055 4.055 20 C -0.234 4.234 21 C -0.140 4.140 22 C 0.176 3.824 23 O -0.474 6.474 24 C -0.126 4.126 25 H 0.385 0.615 26 H 0.080 0.920 27 H -0.253 1.253 28 H -0.249 1.249 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.399 0.601 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.218 0.782 35 H 0.170 0.830 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 5.145 6.862 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.189 4.189 3 Si 0.588 3.412 4 C -0.031 4.031 5 C -0.161 4.161 6 C -0.082 4.082 7 C -0.170 4.170 8 C 0.349 3.651 9 O -0.391 6.391 10 N -0.370 5.370 11 C 0.022 3.978 12 H 0.141 0.859 13 C -0.172 4.172 14 C -0.054 4.054 15 H 0.132 0.868 16 C -0.130 4.130 17 N -0.065 5.065 18 O 0.033 5.967 19 C -0.137 4.137 20 C -0.255 4.255 21 C -0.179 4.179 22 C 0.129 3.871 23 O -0.285 6.285 24 C -0.144 4.144 25 H 0.233 0.767 26 H 0.098 0.902 27 H -0.178 1.178 28 H -0.173 1.173 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.235 0.765 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.234 0.766 35 H 0.188 0.812 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.257 0.743 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.659 4.496 4.189 6.696 hybrid contribution 0.839 -0.077 1.076 1.366 sum 3.498 4.419 5.265 7.712 Atomic orbital electron populations 1.86502 1.16722 1.81901 1.49864 1.24776 0.86200 1.10736 0.97199 0.95076 0.80617 0.77753 0.87725 1.19438 0.95484 0.93509 0.94685 1.20797 1.00697 0.99497 0.95072 1.21073 0.97665 0.92836 0.96586 1.20407 1.03064 0.95510 0.97993 1.18045 0.78018 0.86429 0.82635 1.90835 1.56642 1.15938 1.75658 1.45872 1.52448 1.15548 1.23180 1.22469 0.94472 0.96782 0.84099 0.85942 1.23406 0.96768 0.98732 0.98295 1.20684 0.89372 0.97572 0.97729 0.86832 1.23384 0.99417 1.01603 0.88633 1.73883 0.99152 1.10755 1.22667 1.84877 1.30581 1.52094 1.29114 1.26098 1.01931 1.02321 0.83301 1.22695 0.96470 1.04224 1.02149 1.23554 0.96624 1.03192 0.94507 1.18488 0.91552 0.85971 0.91076 1.84774 1.51647 1.12275 1.79849 1.21338 1.01021 0.94721 0.97332 0.76651 0.90186 1.17783 1.17307 0.85576 0.84900 0.76512 0.89699 0.89227 0.76598 0.81215 0.89102 0.89910 0.74339 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.36 12.74 -35.23 -0.45 -0.09 16 2 C -0.08 0.10 2.80 36.00 0.10 0.20 16 3 Si 0.69 -1.69 29.77 -169.99 -5.06 -6.75 16 4 C -0.03 -0.03 5.43 -104.58 -0.57 -0.60 16 5 C -0.14 -0.08 8.65 -39.63 -0.34 -0.43 16 6 C -0.06 0.00 9.54 -39.20 -0.37 -0.37 16 7 C -0.17 -0.34 5.89 -104.85 -0.62 -0.95 16 8 C 0.56 1.58 7.76 -12.47 -0.10 1.48 16 9 O -0.52 -3.21 14.76 -16.58 -0.24 -3.46 16 10 N -0.72 0.27 5.30 -54.06 -0.29 -0.02 16 11 C 0.13 -0.06 4.24 -67.12 -0.28 -0.35 16 12 H 0.12 0.14 7.46 -51.93 -0.39 -0.25 16 13 C -0.13 0.17 7.38 -25.92 -0.19 -0.02 16 14 C -0.03 0.01 4.29 -90.96 -0.39 -0.38 16 15 H 0.11 -0.03 8.14 -51.93 -0.42 -0.45 16 16 C 0.03 0.03 6.70 -82.10 -0.55 -0.52 16 17 N -0.36 -1.24 12.07 33.42 0.40 -0.84 16 18 O 0.10 0.19 11.20 17.16 0.19 0.38 16 19 C -0.06 0.08 12.30 29.74 0.37 0.45 16 20 C -0.23 0.24 10.28 -39.38 -0.40 -0.17 16 21 C -0.14 0.18 7.27 -25.92 -0.19 0.00 16 22 C 0.18 0.48 6.72 -38.69 -0.26 0.22 16 23 O -0.47 -1.54 11.58 -40.54 -0.47 -2.00 16 24 C -0.13 -0.22 9.53 -39.47 -0.38 -0.59 16 25 H 0.39 -2.22 8.74 45.56 0.40 -1.82 16 26 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 27 H -0.25 0.11 7.11 56.52 0.40 0.51 16 28 H -0.25 -0.19 7.11 56.52 0.40 0.22 16 29 H 0.13 -0.05 4.85 -52.48 -0.25 -0.31 16 30 H 0.13 -0.43 6.40 -52.49 -0.34 -0.76 16 31 H 0.40 -1.16 6.76 -40.82 -0.28 -1.43 16 32 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.09 -0.17 8.07 -51.93 -0.42 -0.59 16 34 H 0.22 -1.23 8.06 -52.48 -0.42 -1.65 16 35 H 0.17 -0.58 7.13 -52.49 -0.37 -0.95 16 36 H 0.09 -0.21 6.63 -51.93 -0.34 -0.55 16 37 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.40 -0.32 9.06 45.56 0.41 0.09 16 39 H 0.14 0.12 8.06 -52.49 -0.42 -0.30 16 LS Contribution 334.01 15.07 5.03 5.03 Total: 0.00 -11.32 334.01 -8.36 -19.69 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: -3.30 Total: -9.92 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -4.18 Total: -2.03 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: 0.12 Total: -0.86 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.97 Total: -5.17 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: -5.06 Total: -6.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -11.32 -8.36 -19.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_13422076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.636 kcal (2) G-P(sol) polarization free energy of solvation -11.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds